mRNA_H-elongata_contig49679.12173.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49679.12173.1
Unique NamemRNA_H-elongata_contig49679.12173.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig49679.12173.1 vs. uniprot
Match: A0A7S2FWS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FWS9_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 9.970e-10
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    7 DGSNRVNDFYEFNIATGFWSHVRALGTSPSPRDRHTGVVHGNSFFVLAG 153
            DG+NRVNDFYEF+  T  W     +G  P+PRDRH+ V + NSF+V AG
Sbjct:    1 DGTNRVNDFYEFDFKTREWMTRAPVGQLPTPRDRHSSVCYANSFYVFAG 49
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BLAST of mRNA_H-elongata_contig49679.12173.1 vs. uniprot
Match: F0Y4D1_AURAN (BTB domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4D1_AURAN)

HSP 1 Score: 63.5 bits (153), Expect = 1.370e-8
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 GYDGSNRVNDFYEFNIATGFWSHV-RALGTSPSPRDRHTGVVHGNSFFVLAG 153
            GYDGSNRVND +EF+     WS V  A G+ P+PRDRH  VV G+SF+V AG
Sbjct:   33 GYDGSNRVNDCWEFDFGKRSWSLVVPASGSPPTPRDRHVAVVWGSSFYVFAG 84
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BLAST of mRNA_H-elongata_contig49679.12173.1 vs. uniprot
Match: A0A7S1V2Y6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V2Y6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 5.040e-8
Identity = 30/54 (55.56%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    1 GYDGSNRVNDFYEFNIATGFWSHVRALGTS---PSPRDRHTGVVHGNSFFVLAG 153
            GY G  RVNDF+ ++ A   WS V     S   PSPRDRHTGVV+GNSF+V  G
Sbjct:  207 GYSGQTRVNDFHAYSFAEKRWSPVLPSANSGRPPSPRDRHTGVVYGNSFYVYGG 260
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BLAST of mRNA_H-elongata_contig49679.12173.1 vs. uniprot
Match: A0A4D9CMR4_9STRA (BTB domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMR4_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.180e-7
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 GYDGSNRVNDFYEFNIATGFWSHVRAL-GTSPSPRDRHTGVVHGNSFFVLAG 153
            G+DGS RVNDFY F++ T  W  V  L G++P+PR  HTGVV+ + F+VL G
Sbjct:  297 GFDGSQRVNDFYGFSLDTREWRPVVCLTGSAPTPRHSHTGVVYKDKFYVLTG 348
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BLAST of mRNA_H-elongata_contig49679.12173.1 vs. uniprot
Match: A0A078ALD4_STYLE (Amp-dependent synthetase and ligase n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078ALD4_STYLE)

HSP 1 Score: 57.4 bits (137), Expect = 2.120e-6
Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:    1 GYDGSNRVNDFYEFNIATGFWSHVRALGTS--PSPRDRHTGVVHGNSFFVLAG 153
            GYDG NRVNDFYE+N+    W  V   G+S  P+PR  H+ VV+ +S +V  G
Sbjct:   61 GYDGFNRVNDFYEYNVDYNTWQEVLCSGSSSPPTPRHSHSAVVYEDSMYVFGG 113
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BLAST of mRNA_H-elongata_contig49679.12173.1 vs. uniprot
Match: A0A813EXI4_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EXI4_POLGL)

HSP 1 Score: 56.6 bits (135), Expect = 2.760e-6
Identity = 24/42 (57.14%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:    1 GYDGSNRVNDFYEFNIATGFWSHVRALGTSPSPRDRHTGVVH 126
            GYDGSNRVNDF++F+     WS +   G SPS RDRH  V H
Sbjct:   14 GYDGSNRVNDFFKFSFKASKWSQLNVAGASPSARDRHVVVNH 55
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BLAST of mRNA_H-elongata_contig49679.12173.1 vs. uniprot
Match: A0A7S1XQV5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQV5_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 7.030e-6
Identity = 25/54 (46.30%), Postives = 31/54 (57.41%), Query Frame = 1 
Query:    1 GYDGSNRVNDFYEFNIATGFWSHVRA---LGTSPSPRDRHTGVVHGNSFFVLAG 153
            GYDGSNR+NDF+E+N  T  W  V      G  PSPR  H   V+ +S +V  G
Sbjct:  127 GYDGSNRINDFHEYNFTTHTWDSVTVDVISGAPPSPRHSHAAAVYRDSLYVFGG 180
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BLAST of mRNA_H-elongata_contig49679.12173.1 vs. uniprot
Match: D8LIL3_ECTSI (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIL3_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 2.070e-5
Identity = 131/167 (78.44%), Postives = 134/167 (80.24%), Query Frame = 1 
Query:    1 GYDGSNRVNDFYEFNIATGFWSHVRALGTSPSPRDRHTGVVHGNSFFVLAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNAAGRVPRARYRATXXXXXXXXXXXXXXXXTRHLNDVHVFDFE 501
            GYDGSNRVNDFYEF I+TG WS V+A GT                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VNAAGRVPRA     XXXXXXXXXXXXXXXXTRHLNDVHVFDF+
Sbjct:   39 GYDGSNRVNDFYEFKISTGSWSKVQASGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQVNAAGRVPRAXXXXXXXXXXXXXXXXXXXXXTRHLNDVHVFDFD 205
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BLAST of mRNA_H-elongata_contig49679.12173.1 vs. uniprot
Match: A0A3R7Y188_9STRA (BTB domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7Y188_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.800e-5
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    1 GYDGSNRVNDFYEFNIATGFWSHVRALGTSPSP 99
            GYDGSNRVNDF+E+N     WS V ALGT P+P
Sbjct:  142 GYDGSNRVNDFFEYNFKRKVWSQVMALGTPPTP 174
[Close]
BLAST of mRNA_H-elongata_contig49679.12173.1 vs. uniprot
Match: A0A024UKA9_9STRA (BTB domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UKA9_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 4.000e-5
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    1 GYDGSNRVNDFYEFNIATGFWSHVRALGTSPSP 99
            GYDGSNRVNDF+E+N     WS V ALGT P+P
Sbjct:  140 GYDGSNRVNDFFEYNFKRKVWSQVMALGTPPTP 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49679.12173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A7S2FWS9_9STRA9.970e-1055.10Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
F0Y4D1_AURAN1.370e-859.62BTB domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S1V2Y6_9STRA5.040e-855.56Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A4D9CMR4_9STRA3.180e-753.85BTB domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A078ALD4_STYLE2.120e-649.06Amp-dependent synthetase and ligase n=1 Tax=Stylon... [more]
A0A813EXI4_POLGL2.760e-657.14Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A7S1XQV5_9STRA7.030e-646.30Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
D8LIL3_ECTSI2.070e-578.44BTB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A3R7Y188_9STRA3.800e-566.67BTB domain-containing protein n=4 Tax=Aphanomyces ... [more]
A0A024UKA9_9STRA4.000e-566.67BTB domain-containing protein n=1 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49679contigH-elongata_contig49679:375..1324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue4.1e-10
Seed eggNOG ortholog42099.EPrPV00000016031
Preferred namelztr1
KEGG koko:K12115,ko:K12116,ko:K12117
KEGG Pathwayko04712,map04712
GOsGO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0007600,GO:0008150,GO:0015030,GO:0016604,GO:0019233,GO:0031974,GO:0031981,GO:0032501,GO:0042752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0050789,GO:0050877,GO:0065007,GO:0070013
EggNOG free text desc.Kelch repeat protein. Source PGD
EggNOG OGs1MC12@121069,2CMFB@1,2QQ74@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size534
Cds size534
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930818.0056593-CDS-H-elongata_contig49679:374..5701622930818.0056593-CDS-H-elongata_contig49679:374..570Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49679 375..570 -
1691679583.1761277-CDS-H-elongata_contig49679:374..5701691679583.1761277-CDS-H-elongata_contig49679:374..570Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49679 375..570 -
1622930818.022416-CDS-H-elongata_contig49679:986..13241622930818.022416-CDS-H-elongata_contig49679:986..1324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49679 987..1324 -
1691679583.1930845-CDS-H-elongata_contig49679:986..13241691679583.1930845-CDS-H-elongata_contig49679:986..1324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49679 987..1324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49679.12173.1prot_H-elongata_contig49679.12173.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49679 375..1324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49679.12173.1

>prot_H-elongata_contig49679.12173.1 ID=prot_H-elongata_contig49679.12173.1|Name=mRNA_H-elongata_contig49679.12173.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp
GYDGSNRVNDFYEFNIATGFWSHVRALGTSPSPRDRHTGVVHGNSFFVLA
GFDGNQRVNDFFEFNFDTMQWTPVLALSGAPPSPRHSHASVVHGNSMFVF
GGYDGSYRSDFHEFNFGCNSWLPVNAAGRVPRARYRATCVVHSGCMYLFG
GHDGTRHLNDVHVFDFEVVIIIISYYY*
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mRNA from alignment at H-elongata_contig49679:375..1324-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49679.12173.1 ID=mRNA_H-elongata_contig49679.12173.1|Name=mRNA_H-elongata_contig49679.12173.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=950bp|location=Sequence derived from alignment at H-elongata_contig49679:375..1324- (Himanthalia elongata Himel1 dioecious)
GGCTACGACGGCTCCAACCGCGTGAACGACTTCTATGAGTTCAACATCGC
GACAGGATTCTGGTCGCACGTGCGCGCTCTGGGAACGAGCCCCTCTCCCC
GTGATCGTCACACGGGCGTGGTCCACGGCAACTCCTTTTTCGTCTTGGCG
GGTTTTGACGGCAACCAGAGGGTGAACGACTTTTTCGAGTTCAACTTTGA
CACGATGCAATGGACGCCCGTCCTGGCGCTATCGGGAGCTCCGCCCAGTC
CCCGGCATAGTCACGCCTCCGTGGTGCATGGGAACTCGATGTTCGTGTTC
GGGGGCTACGATGGGAGCTACCGGAGCGACTTTCACGAGTGAGTCGAGGG
TAGAAAACTTCCTGCTGTTGCCTATTTACTCCGCAGAATGCCGAACGAAA
CTTCGAAACGTTTCTGGAAATTTCGGGGGGAAGGAGGAAAAGTTCAAGTT
CACCTGAGTACCCTTCTCACAGGCACACATATTCGCCTCACCAATCCCTT
CCCCCCCCCCCCCCCCCCCCCCCCCCCTTCTTTTTTTTTTTTTTTTTTTT
TTTCCTTTTTTTTTTTTTCTTTTTTCGGGCCGCGTTTTTTTTTGTTTNNN
NNNNNNNAAAAATTACACCCCCCCCTGTTCCCCCTCCCCACCCCCACCCC
TTTCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCTTCTAACTCCTTT
ATTTTATTTTATCTCCTTCCTCGGCCTTCCTTCTGGTTCACTTGGTCGGG
ACAGGTTTAACTTTGGGTGCAACTCTTGGCTTCCGGTCAATGCCGCGGGG
AGGGTCCCTCGAGCGCGTTACCGGGCAACCTGTGTGGTCCACTCGGGCTG
CATGTATCTGTTCGGGGGCCACGATGGCACGCGTCACCTTAACGATGTCC
ACGTCTTCGACTTCGAGGTAGTTATTATTATTATTAGTTATTATTATTGA
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Coding sequence (CDS) from alignment at H-elongata_contig49679:375..1324-

>mRNA_H-elongata_contig49679.12173.1 ID=mRNA_H-elongata_contig49679.12173.1|Name=mRNA_H-elongata_contig49679.12173.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig49679:375..1324- (Himanthalia elongata Himel1 dioecious)
GGCTACGACGGCTCCAACCGCGTGAACGACTTCTATGAGTTCAACATCGC
GACAGGATTCTGGTCGCACGTGCGCGCTCTGGGAACGAGCCCCTCTCCCC
GTGATCGTCACACGGGCGTGGTCCACGGCAACTCCTTTTTCGTCTTGGCG
GGTTTTGACGGCAACCAGAGGGTGAACGACTTTTTCGAGTTCAACTTTGA
CACGATGCAATGGACGCCCGTCCTGGCGCTATCGGGAGCTCCGCCCAGTC
CCCGGCATAGTCACGCCTCCGTGGTGCATGGGAACTCGATGTTCGTGTTC
GGGGGCTACGATGGGAGCTACCGGAGCGACTTTCACGAGGCTACGACGGC
TCCAACCGCGTGAACGACTTCTATGAGTTCAACATCGCGACAGGATTCTG
GTCGCACGTGCGCGCTCTGGGAACGAGCCCCTCTCCCCGTGATCGTCACA
CGGGCGTGGTCCACGGCAACTCCTTTTTCGTCTTGGCGGGTTTTGACGGC
AACCAGAGGGTGAACGACTTTTTCGAGTTCAACTTTGACACGATGCAATG
GACGCCCGTCCTGGCGCTATCGGGAGCTCCGCCCAGTCCCCGGCATAGTC
ACGCCTCCGTGGTGCATGGGAACTCGATGTTCGTGTTCGGGGGCTACGAT
GGGAGCTACCGGAGCGACTTTCACGAGTTTAACTTTGGGTGCAACTCTTG
GCTTCCGGTCAATGCCGCGGGGAGGGTCCCTCGAGCGCGTTACCGGGCAA
CCTGTGTGGTCCACTCGGGCTGCATGTATCTGTTCGGGGGCCACGATGGC
ACGCGTCACCTTAACGATGTCCACGTCTTCGACTTCGAGGTAGTTATTAT
TATTATTAGTTATTATTATTGAGTTTAACTTTGGGTGCAACTCTTGGCTT
CCGGTCAATGCCGCGGGGAGGGTCCCTCGAGCGCGTTACCGGGCAACCTG
TGTGGTCCACTCGGGCTGCATGTATCTGTTCGGGGGCCACGATGGCACGC
GTCACCTTAACGATGTCCACGTCTTCGACTTCGAGGTAGTTATTATTATT
ATTAGTTATTATTATTGA
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