mRNA_H-elongata_contig11520.1209.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11520.1209.1
Unique NamemRNA_H-elongata_contig11520.1209.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11520.1209.1 vs. uniprot
Match: D7FTI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI1_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 1.670e-6
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 1 
Query:    1 AFSED--ALMGVDNSDSDDNDRGYGSRAVDNLNASISGAVVDRISNLTGAASHGPDAHNLSFSIITSQMHGIADSDSSMELTGTFTSTLDQASAPAAPAA 294
            A+SED  A+ G       D+D    +R V+NLNAS+ G     +     AAS+  +  N SFSI  SQ+H + DSDSS+ELTGTFT++ +    PA  AA
Sbjct:    2 AYSEDVRAMGGGGPPSPYDSDFDPAARRVENLNASLLGPAASAVKRGASAASY-EEPQNRSFSINNSQLHRLNDSDSSLELTGTFTTSEEVRITPAMAAA 100
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BLAST of mRNA_H-elongata_contig11520.1209.1 vs. uniprot
Match: A0A6H5KYX0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYX0_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.100e-5
Identity = 39/86 (45.35%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:    1 AFSED--ALMGVDNSDSDDNDRGYGSRAVDNLNASISGAVVDRISNLTGAASHGPDAHNLSFSIITSQMHGIADSDSSMELTGTFT 252
            A+SED  A+ G       D+D    +R V+NLNAS+ G           AAS+  +  N SFSI  SQ+H + DSDSS+ELTGTFT
Sbjct: 1211 AYSEDVRAMGGGGPPSPYDSDFDPAARRVENLNASLLGPAASAAKRGASAASY-EEPQNRSFSINNSQLHRLNDSDSSLELTGTFT 1295
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11520.1209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTI1_ECTSI1.670e-643.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYX0_9PHAE1.100e-545.35Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11520contigH-elongata_contig11520:5400..7000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_001450.1
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11520.1209.1prot_H-elongata_contig11520.1209.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11520 5400..6979 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929667.550824-CDS-H-elongata_contig11520:5399..55101622929667.550824-CDS-H-elongata_contig11520:5399..5510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11520 5400..5510 -
1691679112.231766-CDS-H-elongata_contig11520:5399..55101691679112.231766-CDS-H-elongata_contig11520:5399..5510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11520 5400..5510 -
1622929667.5665245-CDS-H-elongata_contig11520:6817..69791622929667.5665245-CDS-H-elongata_contig11520:6817..6979Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11520 6818..6979 -
1691679112.2421713-CDS-H-elongata_contig11520:6817..69791691679112.2421713-CDS-H-elongata_contig11520:6817..6979Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11520 6818..6979 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929667.5805829-UTR-H-elongata_contig11520:6979..70001622929667.5805829-UTR-H-elongata_contig11520:6979..7000Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11520 6980..7000 -
1691679112.2516947-UTR-H-elongata_contig11520:6979..70001691679112.2516947-UTR-H-elongata_contig11520:6979..7000Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11520 6980..7000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11520.1209.1

>prot_H-elongata_contig11520.1209.1 ID=prot_H-elongata_contig11520.1209.1|Name=mRNA_H-elongata_contig11520.1209.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MGVDNSDSDDNDRGYGSRAVDNLNASISGAVVDRISNLTGAASHGPDAHN
LSFSIITSQMHGIADSDSSMELTGTFTSTLDQASAPAAPAA
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mRNA from alignment at H-elongata_contig11520:5400..7000-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11520.1209.1 ID=mRNA_H-elongata_contig11520.1209.1|Name=mRNA_H-elongata_contig11520.1209.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1601bp|location=Sequence derived from alignment at H-elongata_contig11520:5400..7000- (Himanthalia elongata Himel1 dioecious)
GCGTTTTCCGAAGATGCGCTCATGGGCGTGGACAACTCGGATTCCGATGA
CAACGATCGCGGCTACGGGTCGCGTGCGGTGGATAACCTTAACGCGAGCA
TCTCGGGCGCAGTCGTGGATCGGATTAGCAACCTGACGGGTGCCGCAAGC
CATGGCCCGGACGCCCATAACTTGTCGTTCTCGGTGAGCAAGGCTTAAAA
GGGTTGTAGAGATTTGGAAGCGGCGGCCTGACGGGTGACCGTAACTCAAA
ATACGTCGTTCTCTGCAAGGCGTGCTGCTTTAAATAAGATTTGCAGAGTT
GAAAGCAGCGAAACGTGTCGCTCGTGGCCGTTTTCTTTATCCATATACTT
GGTAGATAATTTTCTTTGATTGTTTTTATAAATTTCAATGCTATAATTTT
TATAATTTTTGTCATTTTTATCATTTTTAATTTTTATTATGCCCTGAGAA
CTACGACACGCGAACAAAAGATCAATACTTATTTAAAAGCCAAATATACC
CTGTACCGTTAATATGTATGTGTTTAGCGAATTTGTGGATTTGTACTTTT
TTTGTGGTAGCTTTAACCCCTAAAACACTCGATCTGTTTTCCACATATAA
ATTTCAATATAAAAATTGAAATCCAGTTCCGAAACGGTTAAAAAAAACAA
ATAAAACGATCGTCCTCGTTTGGGTGTTTTGATGCAGCGAGTAGCACTTG
TCTATTTGCATGGCATCTATTTGCATGGCATCCTCTGGCACATTCCGGCT
GTGTTCAAGATTTCAAAAAAGACCCCTCCCTCGTATCCCCGTTTTTTAGC
GACACACCAAGGCCAAAACGGTTACCTAGGTAGGCTCCATATTTTACATC
GAAATGTGACATTTTGCATCGAAATGTGTAAGCACACTGAACCTGGTATA
ATAAATGTCGAGGAAAAAAAGTATTTGCTGTAGGCTAATGAGATATGCAT
TCTGCGCCTCGCCGCAAGGACTAGCCCCCCCCCCCACCTCACCTACTCCA
GTAACATAACCGATTACCGGTATCCACCCTAATCAGTCGTAGGGAAATAG
TTAGGATGAATGCGTGAGTCATAAAAGTCCGACCTTTACTTGCCAAGGAT
TATAAATGCTAACGAATTTGCCTCGCGATAATAATTCGTAAGGAGGCGTG
AATCAGTCAAGGAGAAATATTTTATCCCCTAAGTTCATAAGCGGGAGGAA
GGGGCAGCATTTTGTTAGTGAAATAGTTGGTATTGGTTGAAAGGGTTCAT
CGACAGAAATGGAGAATATCAGGGCTTGGTTAAGGAAAAAAAAATACTTC
GTGGATTTCGATTTTGTAAATGATCTAGTAACACAGCTGACGAGGCGTTA
TTAAGGGGGTGGGGGGCTGTAACCGTTTCCCGAGGGTGGTGATCAGTTTA
CCTCTTTAAATGTATATATATATATATTTAAACATGACATGTAATATTCT
ATATTTTTTTTTTCTCTCTCTCAACCCCCGATATTCAAAGATCATCACCA
GCCAGATGCATGGCATCGCGGACTCGGACTCTTCCATGGAGCTCACCGGG
ACGTTTACCTCTACCCTCGACCAAGCTTCCGCTCCGGCCGCCCCAGCAGC
C
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Coding sequence (CDS) from alignment at H-elongata_contig11520:5400..7000-

>mRNA_H-elongata_contig11520.1209.1 ID=mRNA_H-elongata_contig11520.1209.1|Name=mRNA_H-elongata_contig11520.1209.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig11520:5400..7000- (Himanthalia elongata Himel1 dioecious)
ATGGGCGTGGACAACTCGGATTCCGATGACAACGATCGCGGCTACGGGTC
GCGTGCGGTGGATAACCTTAACGCGAGCATCTCGGGCGCAGTCGTGGATC
GGATTAGCAACCTGACGGGTGCCGCAAGCCATGGCCCGGACGCCCATAAC
TTGTCGTTCTCGATGGGCGTGGACAACTCGGATTCCGATGACAACGATCG
CGGCTACGGGTCGCGTGCGGTGGATAACCTTAACGCGAGCATCTCGGGCG
CAGTCGTGGATCGGATTAGCAACCTGACGGGTGCCGCAAGCCATGGCCCG
GACGCCCATAACTTGTCGTTCTCGATCATCACCAGCCAGATGCATGGCAT
CGCGGACTCGGACTCTTCCATGGAGCTCACCGGGACGTTTACCTCTACCC
TCGACCAAGCTTCCGCTCCGGCCGCCCCAGCAGCCATCATCACCAGCCAG
ATGCATGGCATCGCGGACTCGGACTCTTCCATGGAGCTCACCGGGACGTT
TACCTCTACCCTCGACCAAGCTTCCGCTCCGGCCGCCCCAGCAGCC
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