prot_H-elongata_contig11520.1209.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig11520.1209.1
Unique Nameprot_H-elongata_contig11520.1209.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length91
Homology
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BLAST of mRNA_H-elongata_contig11520.1209.1 vs. uniprot
Match: D7FTI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI1_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.770e-6
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 0 
Query:   10 DNDRGYGSRAVDNLNASISGAVVDRISNLTGAASHGPDAHNLSFSIITSQMHGIADSDSSMELTGTFTSTLDQASAPAAPAA 91
            D+D    +R V+NLNAS+ G     +     AAS+  +  N SFSI  SQ+H + DSDSS+ELTGTFT++ +    PA  AA
Sbjct:   20 DSDFDPAARRVENLNASLLGPAASAVKRGASAASY-EEPQNRSFSINNSQLHRLNDSDSSLELTGTFTTSEEVRITPAMAAA 100
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BLAST of mRNA_H-elongata_contig11520.1209.1 vs. uniprot
Match: A0A6H5KYX0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYX0_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.160e-5
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = 0 
Query:   10 DNDRGYGSRAVDNLNASISGAVVDRISNLTGAASHGPDAHNLSFSIITSQMHGIADSDSSMELTGTFT 77
            D+D    +R V+NLNAS+ G           AAS+  +  N SFSI  SQ+H + DSDSS+ELTGTFT
Sbjct: 1229 DSDFDPAARRVENLNASLLGPAASAAKRGASAASY-EEPQNRSFSINNSQLHRLNDSDSSLELTGTFT 1295
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11520.1209.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTI1_ECTSI1.770e-645.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYX0_9PHAE1.160e-548.53Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11520contigH-elongata_contig11520:5400..6979 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11520.1209.1mRNA_H-elongata_contig11520.1209.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig11520 5400..7000 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig11520.1209.1 ID=prot_H-elongata_contig11520.1209.1|Name=mRNA_H-elongata_contig11520.1209.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MGVDNSDSDDNDRGYGSRAVDNLNASISGAVVDRISNLTGAASHGPDAHN
LSFSIITSQMHGIADSDSSMELTGTFTSTLDQASAPAAPAA
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