prot_H-elongata_contig4884.12054.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig4884.12054.1
Unique Nameprot_H-elongata_contig4884.12054.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length171
Homology
BLAST of mRNA_H-elongata_contig4884.12054.1 vs. uniprot
Match: D7FKQ4_ECTSI (Actin-related protein 2/3 complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKQ4_ECTSI)

HSP 1 Score: 323 bits (829), Expect = 1.000e-111
Identity = 159/169 (94.08%), Postives = 168/169 (99.41%), Query Frame = 0
Query:    2 ANTLRPYLNAIRGTLDAALCIRNFPSQTVERHNKPEVEIKSSKELLLNPVTICRNEQERCLIETSVNSVRVSIAVKQADEIETILCHRFTSFLMQRAEQFMVMRRKPAEGYDISFLVTHTHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRMIAQQYMLQFVQ 170
            ANTLRPYLNAIRGTLDAALC+RNFPSQTVERHNKPEVE +SSKELLLNPVTICRNEQE+CLIETSVNSVRVSIAVKQADEIETILCH+FTSFLMQRAEQF+VMRRKPAEG+DISFLVTH+HLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGR+IAQQ+MLQFVQ
Sbjct:    2 ANTLRPYLNAIRGTLDAALCLRNFPSQTVERHNKPEVETRSSKELLLNPVTICRNEQEKCLIETSVNSVRVSIAVKQADEIETILCHKFTSFLMQRAEQFVVMRRKPAEGFDISFLVTHSHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRIIAQQFMLQFVQ 170          
BLAST of mRNA_H-elongata_contig4884.12054.1 vs. uniprot
Match: A0A836CIE5_9STRA (Actin-related protein 2/3 complex subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIE5_9STRA)

HSP 1 Score: 284 bits (727), Expect = 3.550e-96
Identity = 133/167 (79.64%), Postives = 154/167 (92.22%), Query Frame = 0
Query:    2 ANTLRPYLNAIRGTLDAALCIRNFPSQTVERHNKPEVEIKSSKELLLNPVTICRNEQERCLIETSVNSVRVSIAVKQADEIETILCHRFTSFLMQRAEQFMVMRRKPAEGYDISFLVTHTHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRMIAQQYMLQF 168
            ANTLRPYL  IR TLDA+LC+RNFPSQTVERHNKPEVE++SSKELLLNP+TICRNEQERCL+E+S+NSVRVSI VKQADEIE+ILC +FT FLMQR+EQF+VMRRK A GYDISFL+TH HLE +WKHKL+DF+I+FMEDIDKEISGMKIAINAR R++A +Y+ QF
Sbjct:    2 ANTLRPYLTTIRHTLDASLCLRNFPSQTVERHNKPEVEVQSSKELLLNPITICRNEQERCLVESSINSVRVSIGVKQADEIESILCRKFTRFLMQRSEQFIVMRRKAAPGYDISFLITHAHLEGMWKHKLVDFVIEFMEDIDKEISGMKIAINARARIVASEYVRQF 168          
BLAST of mRNA_H-elongata_contig4884.12054.1 vs. uniprot
Match: A0A2D4BNX3_PYTIN (Actin-related protein 2/3 complex subunit 4 n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNX3_PYTIN)

HSP 1 Score: 270 bits (690), Expect = 1.490e-90
Identity = 128/167 (76.65%), Postives = 148/167 (88.62%), Query Frame = 0
Query:    2 ANTLRPYLNAIRGTLDAALCIRNFPSQTVERHNKPEVEIKSSKELLLNPVTICRNEQERCLIETSVNSVRVSIAVKQADEIETILCHRFTSFLMQRAEQFMVMRRKPAEGYDISFLVTHTHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRMIAQQYMLQF 168
            ANTL PYL AIR +LDAALC+RNFPSQ VERHNKPEVE++ SKELLLNP+ I RNE E+CLIE S+NS RVSI +KQADEIETILCH+FT FLMQRAEQF++MRR P EGY +SFL+THTHLE L+KHKLIDFIIQFMEDIDKEIS MKI++NARGR++A ++M QF
Sbjct:    2 ANTLAPYLTAIRNSLDAALCLRNFPSQVVERHNKPEVELRLSKELLLNPILIARNENEKCLIEPSINSTRVSICIKQADEIETILCHKFTRFLMQRAEQFIIMRRVPVEGYHMSFLITHTHLESLYKHKLIDFIIQFMEDIDKEISEMKISLNARGRIVATEFMKQF 168          
BLAST of mRNA_H-elongata_contig4884.12054.1 vs. uniprot
Match: A0A024TP77_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TP77_9STRA)

HSP 1 Score: 271 bits (692), Expect = 4.040e-90
Identity = 128/167 (76.65%), Postives = 146/167 (87.43%), Query Frame = 0
Query:    2 ANTLRPYLNAIRGTLDAALCIRNFPSQTVERHNKPEVEIKSSKELLLNPVTICRNEQERCLIETSVNSVRVSIAVKQADEIETILCHRFTSFLMQRAEQFMVMRRKPAEGYDISFLVTHTHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRMIAQQYMLQF 168
            ANTL PYLNAIR TLD ALC++NFPSQ VERHNKPEVE+  S+ELLLNPV ICRNE ERC IE S+NS RVSI +KQADEIETILCH+F+ FLMQRAEQF++MRRKP EGY ISFL+ HTHLE L+KHKL+DFIIQFMEDIDKEIS MKI +NARGR++A ++M QF
Sbjct:   51 ANTLAPYLNAIRSTLDGALCLQNFPSQVVERHNKPEVEVGLSRELLLNPVVICRNENERCCIEPSINSTRVSICIKQADEIETILCHKFSRFLMQRAEQFIIMRRKPIEGYSISFLIVHTHLENLYKHKLVDFIIQFMEDIDKEISEMKINLNARGRVVATEFMKQF 217          
BLAST of mRNA_H-elongata_contig4884.12054.1 vs. uniprot
Match: A0A067C4Y9_SAPPC (Actin-related protein 2/3 complex subunit 4 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C4Y9_SAPPC)

HSP 1 Score: 268 bits (685), Expect = 8.610e-90
Identity = 123/167 (73.65%), Postives = 148/167 (88.62%), Query Frame = 0
Query:    2 ANTLRPYLNAIRGTLDAALCIRNFPSQTVERHNKPEVEIKSSKELLLNPVTICRNEQERCLIETSVNSVRVSIAVKQADEIETILCHRFTSFLMQRAEQFMVMRRKPAEGYDISFLVTHTHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRMIAQQYMLQF 168
            ANTL PYLNAIR TLD ALC++NFPSQ VERHNKPEVE++ SKEL+L P+ ICRNE E+C IE S+NS RVSI +KQADEIE+ILCH+F+ FLMQRAEQF+++RRKP EGYD+SFL+TH+HLE L+KHKL+DFIIQFMEDIDKEIS MKI +NARGR++A ++M QF
Sbjct:    2 ANTLAPYLNAIRATLDGALCLQNFPSQVVERHNKPEVEVRMSKELILTPIVICRNENEKCCIEPSINSARVSICIKQADEIESILCHKFSRFLMQRAEQFIILRRKPIEGYDMSFLITHSHLENLYKHKLVDFIIQFMEDIDKEISEMKINLNARGRVVATEFMKQF 168          
BLAST of mRNA_H-elongata_contig4884.12054.1 vs. uniprot
Match: A0A7S2BQQ1_9STRA (Actin-related protein 2/3 complex subunit 4 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQQ1_9STRA)

HSP 1 Score: 268 bits (685), Expect = 1.210e-89
Identity = 124/167 (74.25%), Postives = 148/167 (88.62%), Query Frame = 0
Query:    2 ANTLRPYLNAIRGTLDAALCIRNFPSQTVERHNKPEVEIKSSKELLLNPVTICRNEQERCLIETSVNSVRVSIAVKQADEIETILCHRFTSFLMQRAEQFMVMRRKPAEGYDISFLVTHTHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRMIAQQYMLQF 168
            A TLRPYLN IR TLDAALC+RNFPSQ VERHNKPE+EIK +KELLLNP+TICR + ERCLIE SVNSVR+SI +KQADEIE +LCH+FT FLMQRA+QF++MRRK  EGY ISFLVTH HLEK+WK+KLIDFII FMEDID+EIS MK+A+NAR R++A++++ +F
Sbjct:   12 AATLRPYLNCIRSTLDAALCLRNFPSQIVERHNKPEIEIKGNKELLLNPITICRTKTERCLIEPSVNSVRISIQIKQADEIEEVLCHKFTRFLMQRADQFIIMRRKAKEGYSISFLVTHAHLEKMWKNKLIDFIISFMEDIDREISAMKLAVNARARVVAKEFLKEF 178          
BLAST of mRNA_H-elongata_contig4884.12054.1 vs. uniprot
Match: W4GJL2_9STRA (Actin-related protein 2/3 complex subunit 4 n=5 Tax=Aphanomyces TaxID=100860 RepID=W4GJL2_9STRA)

HSP 1 Score: 268 bits (684), Expect = 1.270e-89
Identity = 126/167 (75.45%), Postives = 147/167 (88.02%), Query Frame = 0
Query:    2 ANTLRPYLNAIRGTLDAALCIRNFPSQTVERHNKPEVEIKSSKELLLNPVTICRNEQERCLIETSVNSVRVSIAVKQADEIETILCHRFTSFLMQRAEQFMVMRRKPAEGYDISFLVTHTHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRMIAQQYMLQF 168
            ANTL PYLNAIR TLDAALC++NFPSQ VERHNKPE+E+  S+ELLLNPV ICRNE E+C IE S+NS RVSI++KQADEIETILCH+F+ FLMQRAEQF++MRRK  EGY ISFL+ HTHLE L+KHKL+DFIIQFMEDIDKEIS MKI +NARGR++A ++M QF
Sbjct:    2 ANTLAPYLNAIRSTLDAALCLQNFPSQVVERHNKPEIEVGLSRELLLNPVVICRNENEKCCIEPSINSTRVSISIKQADEIETILCHKFSRFLMQRAEQFIIMRRKAIEGYSISFLIIHTHLENLYKHKLVDFIIQFMEDIDKEISEMKINLNARGRVVATEFMKQF 168          
BLAST of mRNA_H-elongata_contig4884.12054.1 vs. uniprot
Match: A0A3R6WI01_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6WI01_9STRA)

HSP 1 Score: 271 bits (692), Expect = 2.370e-89
Identity = 128/167 (76.65%), Postives = 146/167 (87.43%), Query Frame = 0
Query:    2 ANTLRPYLNAIRGTLDAALCIRNFPSQTVERHNKPEVEIKSSKELLLNPVTICRNEQERCLIETSVNSVRVSIAVKQADEIETILCHRFTSFLMQRAEQFMVMRRKPAEGYDISFLVTHTHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRMIAQQYMLQF 168
            ANTL PYLNAIR TLD ALC++NFPSQ VERHNKPEVE+  S+ELLLNPV ICRNE ERC IE S+NS RVSI +KQADEIETILCH+F+ FLMQRAEQF++MRRKP EGY ISFL+ HTHLE L+KHKL+DFIIQFMEDIDKEIS MKI +NARGR++A ++M QF
Sbjct:  104 ANTLAPYLNAIRSTLDGALCLQNFPSQVVERHNKPEVEVGLSRELLLNPVVICRNENERCCIEPSINSTRVSICIKQADEIETILCHKFSRFLMQRAEQFIIMRRKPIEGYSISFLIVHTHLENLYKHKLVDFIIQFMEDIDKEISEMKINLNARGRVVATEFMKQF 270          
BLAST of mRNA_H-elongata_contig4884.12054.1 vs. uniprot
Match: K3WN29_GLOUD (Actin-related protein 2/3 complex subunit 4 n=27 Tax=Oomycota TaxID=4762 RepID=K3WN29_GLOUD)

HSP 1 Score: 266 bits (680), Expect = 4.810e-89
Identity = 126/167 (75.45%), Postives = 147/167 (88.02%), Query Frame = 0
Query:    2 ANTLRPYLNAIRGTLDAALCIRNFPSQTVERHNKPEVEIKSSKELLLNPVTICRNEQERCLIETSVNSVRVSIAVKQADEIETILCHRFTSFLMQRAEQFMVMRRKPAEGYDISFLVTHTHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRMIAQQYMLQF 168
            ANTL PYL AIR +LD+ALC+RNFPSQ VERHNKPEVE++ SKELLLNP+ ICRNE E+CLIE SVNS RVSI +KQADEIETILCH+F  FLMQRA+QF++MRR P EGYD+SFLV HTHLE ++KHKLIDFII FMEDIDKEIS MKI++NARGR++A ++M QF
Sbjct:    1 ANTLAPYLTAIRHSLDSALCLRNFPSQVVERHNKPEVELRLSKELLLNPILICRNETEKCLIEPSVNSTRVSICIKQADEIETILCHKFNRFLMQRADQFIIMRRVPVEGYDMSFLVIHTHLENMYKHKLIDFIITFMEDIDKEISEMKISLNARGRIVATEFMKQF 167          
BLAST of mRNA_H-elongata_contig4884.12054.1 vs. uniprot
Match: A0A7S2CG59_9STRA (Actin-related protein 2/3 complex subunit 4 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CG59_9STRA)

HSP 1 Score: 265 bits (676), Expect = 2.090e-88
Identity = 121/168 (72.02%), Postives = 149/168 (88.69%), Query Frame = 0
Query:    2 ANTLRPYLNAIRGTLDAALCIRNFPSQTVERHNKPEVEIKSSKELLLNPVTICRNEQERCLIETSVNSVRVSIAVKQADEIETILCHRFTSFLMQRAEQFMVMRRKPAEGYDISFLVTHTHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRMIAQQYMLQFV 169
            A+TL+PYL  +R TL+A LC+RNFPSQTVERHNKPEVE++ SKELLLNP+TICR ++ERCLIE SVNSVR+SI +KQADE+E +LCH+FT FLMQRA+QF++MRRK  EGY ISFLVTH HLEK+WK KLIDF+IQFMEDIDKEIS MK+A+N+R R +AQ+++ +FV
Sbjct:    2 ASTLKPYLACVRTTLNAGLCLRNFPSQTVERHNKPEVEVRGSKELLLNPLTICRTDKERCLIEPSVNSVRISIQIKQADELEEVLCHKFTRFLMQRADQFIIMRRKAKEGYSISFLVTHAHLEKMWKDKLIDFVIQFMEDIDKEISAMKLAVNSRARNVAQEFVREFV 169          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4884.12054.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKQ4_ECTSI1.000e-11194.08Actin-related protein 2/3 complex subunit 4 n=1 Ta... [more]
A0A836CIE5_9STRA3.550e-9679.64Actin-related protein 2/3 complex subunit 4 n=1 Ta... [more]
A0A2D4BNX3_PYTIN1.490e-9076.65Actin-related protein 2/3 complex subunit 4 n=2 Ta... [more]
A0A024TP77_9STRA4.040e-9076.65Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A067C4Y9_SAPPC8.610e-9073.65Actin-related protein 2/3 complex subunit 4 n=4 Ta... [more]
A0A7S2BQQ1_9STRA1.210e-8974.25Actin-related protein 2/3 complex subunit 4 n=1 Ta... [more]
W4GJL2_9STRA1.270e-8975.45Actin-related protein 2/3 complex subunit 4 n=5 Ta... [more]
A0A3R6WI01_9STRA2.370e-8976.65Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
K3WN29_GLOUD4.810e-8975.45Actin-related protein 2/3 complex subunit 4 n=27 T... [more]
A0A7S2CG59_9STRA2.090e-8872.02Actin-related protein 2/3 complex subunit 4 n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008384Actin-related protein 2/3 complex subunit 4PFAMPF05856ARPC4coord: 2..165
e-value: 4.1E-79
score: 264.0
IPR008384Actin-related protein 2/3 complex subunit 4PIRSFPIRSF039100ARPC4coord: 1..170
e-value: 3.7E-84
score: 278.5
IPR008384Actin-related protein 2/3 complex subunit 4PANTHERPTHR22629ARP2/3 COMPLEX 20 KD SUBUNITcoord: 2..169
IPR034666Arp2/3 complex subunit 2/4GENE3D3.30.1460.20coord: 1..168
e-value: 1.9E-80
score: 270.2
IPR034666Arp2/3 complex subunit 2/4SUPERFAMILY69645Arp2/3 complex subunitscoord: 3..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4884contigH-elongata_contig4884:1402..2867 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4884.12054.1mRNA_H-elongata_contig4884.12054.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig4884 1402..2867 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig4884.12054.1 ID=prot_H-elongata_contig4884.12054.1|Name=mRNA_H-elongata_contig4884.12054.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp
QANTLRPYLNAIRGTLDAALCIRNFPSQTVERHNKPEVEIKSSKELLLNP
VTICRNEQERCLIETSVNSVRVSIAVKQADEIETILCHRFTSFLMQRAEQ
FMVMRRKPAEGYDISFLVTHTHLEKLWKHKLIDFIIQFMEDIDKEISGMK
IAINARGRMIAQQYMLQFVQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008384ARPC4
IPR034666ARPC2/4