mRNA_H-elongata_contig4884.12054.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4884.12054.1
Unique NamemRNA_H-elongata_contig4884.12054.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig4884.12054.1 vs. uniprot
Match: D7FKQ4_ECTSI (Actin-related protein 2/3 complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKQ4_ECTSI)

HSP 1 Score: 323 bits (829), Expect = 1.000e-111
Identity = 159/169 (94.08%), Postives = 168/169 (99.41%), Query Frame = 1 
Query:    4 ANTLRPYLNAIRGTLDAALCIRNFPSQTVERHNKPEVEIKSSKELLLNPVTICRNEQERCLIETSVNSVRVSIAVKQADEIETILCHRFTSFLMQRAEQFMVMRRKPAEGYDISFLVTHTHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRMIAQQYMLQFVQ 510
            ANTLRPYLNAIRGTLDAALC+RNFPSQTVERHNKPEVE +SSKELLLNPVTICRNEQE+CLIETSVNSVRVSIAVKQADEIETILCH+FTSFLMQRAEQF+VMRRKPAEG+DISFLVTH+HLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGR+IAQQ+MLQFVQ
Sbjct:    2 ANTLRPYLNAIRGTLDAALCLRNFPSQTVERHNKPEVETRSSKELLLNPVTICRNEQEKCLIETSVNSVRVSIAVKQADEIETILCHKFTSFLMQRAEQFVVMRRKPAEGFDISFLVTHSHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRIIAQQFMLQFVQ 170
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BLAST of mRNA_H-elongata_contig4884.12054.1 vs. uniprot
Match: A0A836CIE5_9STRA (Actin-related protein 2/3 complex subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIE5_9STRA)

HSP 1 Score: 284 bits (727), Expect = 3.550e-96
Identity = 133/167 (79.64%), Postives = 154/167 (92.22%), Query Frame = 1 
Query:    4 ANTLRPYLNAIRGTLDAALCIRNFPSQTVERHNKPEVEIKSSKELLLNPVTICRNEQERCLIETSVNSVRVSIAVKQADEIETILCHRFTSFLMQRAEQFMVMRRKPAEGYDISFLVTHTHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRMIAQQYMLQF 504
            ANTLRPYL  IR TLDA+LC+RNFPSQTVERHNKPEVE++SSKELLLNP+TICRNEQERCL+E+S+NSVRVSI VKQADEIE+ILC +FT FLMQR+EQF+VMRRK A GYDISFL+TH HLE +WKHKL+DF+I+FMEDIDKEISGMKIAINAR R++A +Y+ QF
Sbjct:    2 ANTLRPYLTTIRHTLDASLCLRNFPSQTVERHNKPEVEVQSSKELLLNPITICRNEQERCLVESSINSVRVSIGVKQADEIESILCRKFTRFLMQRSEQFIVMRRKAAPGYDISFLITHAHLEGMWKHKLVDFVIEFMEDIDKEISGMKIAINARARIVASEYVRQF 168
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BLAST of mRNA_H-elongata_contig4884.12054.1 vs. uniprot
Match: A0A2D4BNX3_PYTIN (Actin-related protein 2/3 complex subunit 4 n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNX3_PYTIN)

HSP 1 Score: 270 bits (690), Expect = 1.490e-90
Identity = 128/167 (76.65%), Postives = 148/167 (88.62%), Query Frame = 1 
Query:    4 ANTLRPYLNAIRGTLDAALCIRNFPSQTVERHNKPEVEIKSSKELLLNPVTICRNEQERCLIETSVNSVRVSIAVKQADEIETILCHRFTSFLMQRAEQFMVMRRKPAEGYDISFLVTHTHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRMIAQQYMLQF 504
            ANTL PYL AIR +LDAALC+RNFPSQ VERHNKPEVE++ SKELLLNP+ I RNE E+CLIE S+NS RVSI +KQADEIETILCH+FT FLMQRAEQF++MRR P EGY +SFL+THTHLE L+KHKLIDFIIQFMEDIDKEIS MKI++NARGR++A ++M QF
Sbjct:    2 ANTLAPYLTAIRNSLDAALCLRNFPSQVVERHNKPEVELRLSKELLLNPILIARNENEKCLIEPSINSTRVSICIKQADEIETILCHKFTRFLMQRAEQFIIMRRVPVEGYHMSFLITHTHLESLYKHKLIDFIIQFMEDIDKEISEMKISLNARGRIVATEFMKQF 168
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BLAST of mRNA_H-elongata_contig4884.12054.1 vs. uniprot
Match: A0A024TP77_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TP77_9STRA)

HSP 1 Score: 271 bits (692), Expect = 4.040e-90
Identity = 128/167 (76.65%), Postives = 146/167 (87.43%), Query Frame = 1 
Query:    4 ANTLRPYLNAIRGTLDAALCIRNFPSQTVERHNKPEVEIKSSKELLLNPVTICRNEQERCLIETSVNSVRVSIAVKQADEIETILCHRFTSFLMQRAEQFMVMRRKPAEGYDISFLVTHTHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRMIAQQYMLQF 504
            ANTL PYLNAIR TLD ALC++NFPSQ VERHNKPEVE+  S+ELLLNPV ICRNE ERC IE S+NS RVSI +KQADEIETILCH+F+ FLMQRAEQF++MRRKP EGY ISFL+ HTHLE L+KHKL+DFIIQFMEDIDKEIS MKI +NARGR++A ++M QF
Sbjct:   51 ANTLAPYLNAIRSTLDGALCLQNFPSQVVERHNKPEVEVGLSRELLLNPVVICRNENERCCIEPSINSTRVSICIKQADEIETILCHKFSRFLMQRAEQFIIMRRKPIEGYSISFLIVHTHLENLYKHKLVDFIIQFMEDIDKEISEMKINLNARGRVVATEFMKQF 217
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BLAST of mRNA_H-elongata_contig4884.12054.1 vs. uniprot
Match: A0A067C4Y9_SAPPC (Actin-related protein 2/3 complex subunit 4 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C4Y9_SAPPC)

HSP 1 Score: 268 bits (685), Expect = 8.610e-90
Identity = 123/167 (73.65%), Postives = 148/167 (88.62%), Query Frame = 1 
Query:    4 ANTLRPYLNAIRGTLDAALCIRNFPSQTVERHNKPEVEIKSSKELLLNPVTICRNEQERCLIETSVNSVRVSIAVKQADEIETILCHRFTSFLMQRAEQFMVMRRKPAEGYDISFLVTHTHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRMIAQQYMLQF 504
            ANTL PYLNAIR TLD ALC++NFPSQ VERHNKPEVE++ SKEL+L P+ ICRNE E+C IE S+NS RVSI +KQADEIE+ILCH+F+ FLMQRAEQF+++RRKP EGYD+SFL+TH+HLE L+KHKL+DFIIQFMEDIDKEIS MKI +NARGR++A ++M QF
Sbjct:    2 ANTLAPYLNAIRATLDGALCLQNFPSQVVERHNKPEVEVRMSKELILTPIVICRNENEKCCIEPSINSARVSICIKQADEIESILCHKFSRFLMQRAEQFIILRRKPIEGYDMSFLITHSHLENLYKHKLVDFIIQFMEDIDKEISEMKINLNARGRVVATEFMKQF 168
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BLAST of mRNA_H-elongata_contig4884.12054.1 vs. uniprot
Match: A0A7S2BQQ1_9STRA (Actin-related protein 2/3 complex subunit 4 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQQ1_9STRA)

HSP 1 Score: 268 bits (685), Expect = 1.210e-89
Identity = 124/167 (74.25%), Postives = 148/167 (88.62%), Query Frame = 1 
Query:    4 ANTLRPYLNAIRGTLDAALCIRNFPSQTVERHNKPEVEIKSSKELLLNPVTICRNEQERCLIETSVNSVRVSIAVKQADEIETILCHRFTSFLMQRAEQFMVMRRKPAEGYDISFLVTHTHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRMIAQQYMLQF 504
            A TLRPYLN IR TLDAALC+RNFPSQ VERHNKPE+EIK +KELLLNP+TICR + ERCLIE SVNSVR+SI +KQADEIE +LCH+FT FLMQRA+QF++MRRK  EGY ISFLVTH HLEK+WK+KLIDFII FMEDID+EIS MK+A+NAR R++A++++ +F
Sbjct:   12 AATLRPYLNCIRSTLDAALCLRNFPSQIVERHNKPEIEIKGNKELLLNPITICRTKTERCLIEPSVNSVRISIQIKQADEIEEVLCHKFTRFLMQRADQFIIMRRKAKEGYSISFLVTHAHLEKMWKNKLIDFIISFMEDIDREISAMKLAVNARARVVAKEFLKEF 178
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BLAST of mRNA_H-elongata_contig4884.12054.1 vs. uniprot
Match: W4GJL2_9STRA (Actin-related protein 2/3 complex subunit 4 n=5 Tax=Aphanomyces TaxID=100860 RepID=W4GJL2_9STRA)

HSP 1 Score: 268 bits (684), Expect = 1.270e-89
Identity = 126/167 (75.45%), Postives = 147/167 (88.02%), Query Frame = 1 
Query:    4 ANTLRPYLNAIRGTLDAALCIRNFPSQTVERHNKPEVEIKSSKELLLNPVTICRNEQERCLIETSVNSVRVSIAVKQADEIETILCHRFTSFLMQRAEQFMVMRRKPAEGYDISFLVTHTHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRMIAQQYMLQF 504
            ANTL PYLNAIR TLDAALC++NFPSQ VERHNKPE+E+  S+ELLLNPV ICRNE E+C IE S+NS RVSI++KQADEIETILCH+F+ FLMQRAEQF++MRRK  EGY ISFL+ HTHLE L+KHKL+DFIIQFMEDIDKEIS MKI +NARGR++A ++M QF
Sbjct:    2 ANTLAPYLNAIRSTLDAALCLQNFPSQVVERHNKPEIEVGLSRELLLNPVVICRNENEKCCIEPSINSTRVSISIKQADEIETILCHKFSRFLMQRAEQFIIMRRKAIEGYSISFLIIHTHLENLYKHKLVDFIIQFMEDIDKEISEMKINLNARGRVVATEFMKQF 168
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BLAST of mRNA_H-elongata_contig4884.12054.1 vs. uniprot
Match: A0A3R6WI01_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6WI01_9STRA)

HSP 1 Score: 271 bits (692), Expect = 2.370e-89
Identity = 128/167 (76.65%), Postives = 146/167 (87.43%), Query Frame = 1 
Query:    4 ANTLRPYLNAIRGTLDAALCIRNFPSQTVERHNKPEVEIKSSKELLLNPVTICRNEQERCLIETSVNSVRVSIAVKQADEIETILCHRFTSFLMQRAEQFMVMRRKPAEGYDISFLVTHTHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRMIAQQYMLQF 504
            ANTL PYLNAIR TLD ALC++NFPSQ VERHNKPEVE+  S+ELLLNPV ICRNE ERC IE S+NS RVSI +KQADEIETILCH+F+ FLMQRAEQF++MRRKP EGY ISFL+ HTHLE L+KHKL+DFIIQFMEDIDKEIS MKI +NARGR++A ++M QF
Sbjct:  104 ANTLAPYLNAIRSTLDGALCLQNFPSQVVERHNKPEVEVGLSRELLLNPVVICRNENERCCIEPSINSTRVSICIKQADEIETILCHKFSRFLMQRAEQFIIMRRKPIEGYSISFLIVHTHLENLYKHKLVDFIIQFMEDIDKEISEMKINLNARGRVVATEFMKQF 270
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BLAST of mRNA_H-elongata_contig4884.12054.1 vs. uniprot
Match: K3WN29_GLOUD (Actin-related protein 2/3 complex subunit 4 n=27 Tax=Oomycota TaxID=4762 RepID=K3WN29_GLOUD)

HSP 1 Score: 266 bits (680), Expect = 4.810e-89
Identity = 126/167 (75.45%), Postives = 147/167 (88.02%), Query Frame = 1 
Query:    4 ANTLRPYLNAIRGTLDAALCIRNFPSQTVERHNKPEVEIKSSKELLLNPVTICRNEQERCLIETSVNSVRVSIAVKQADEIETILCHRFTSFLMQRAEQFMVMRRKPAEGYDISFLVTHTHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRMIAQQYMLQF 504
            ANTL PYL AIR +LD+ALC+RNFPSQ VERHNKPEVE++ SKELLLNP+ ICRNE E+CLIE SVNS RVSI +KQADEIETILCH+F  FLMQRA+QF++MRR P EGYD+SFLV HTHLE ++KHKLIDFII FMEDIDKEIS MKI++NARGR++A ++M QF
Sbjct:    1 ANTLAPYLTAIRHSLDSALCLRNFPSQVVERHNKPEVELRLSKELLLNPILICRNETEKCLIEPSVNSTRVSICIKQADEIETILCHKFNRFLMQRADQFIIMRRVPVEGYDMSFLVIHTHLENMYKHKLIDFIITFMEDIDKEISEMKISLNARGRIVATEFMKQF 167
[Close]
BLAST of mRNA_H-elongata_contig4884.12054.1 vs. uniprot
Match: A0A7S2CG59_9STRA (Actin-related protein 2/3 complex subunit 4 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CG59_9STRA)

HSP 1 Score: 265 bits (676), Expect = 2.090e-88
Identity = 121/168 (72.02%), Postives = 149/168 (88.69%), Query Frame = 1 
Query:    4 ANTLRPYLNAIRGTLDAALCIRNFPSQTVERHNKPEVEIKSSKELLLNPVTICRNEQERCLIETSVNSVRVSIAVKQADEIETILCHRFTSFLMQRAEQFMVMRRKPAEGYDISFLVTHTHLEKLWKHKLIDFIIQFMEDIDKEISGMKIAINARGRMIAQQYMLQFV 507
            A+TL+PYL  +R TL+A LC+RNFPSQTVERHNKPEVE++ SKELLLNP+TICR ++ERCLIE SVNSVR+SI +KQADE+E +LCH+FT FLMQRA+QF++MRRK  EGY ISFLVTH HLEK+WK KLIDF+IQFMEDIDKEIS MK+A+N+R R +AQ+++ +FV
Sbjct:    2 ASTLKPYLACVRTTLNAGLCLRNFPSQTVERHNKPEVEVRGSKELLLNPLTICRTDKERCLIEPSVNSVRISIQIKQADELEEVLCHKFTRFLMQRADQFIIMRRKAKEGYSISFLVTHAHLEKMWKDKLIDFVIQFMEDIDKEISAMKLAVNSRARNVAQEFVREFV 169
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4884.12054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKQ4_ECTSI1.000e-11194.08Actin-related protein 2/3 complex subunit 4 n=1 Ta... [more]
A0A836CIE5_9STRA3.550e-9679.64Actin-related protein 2/3 complex subunit 4 n=1 Ta... [more]
A0A2D4BNX3_PYTIN1.490e-9076.65Actin-related protein 2/3 complex subunit 4 n=2 Ta... [more]
A0A024TP77_9STRA4.040e-9076.65Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A067C4Y9_SAPPC8.610e-9073.65Actin-related protein 2/3 complex subunit 4 n=4 Ta... [more]
A0A7S2BQQ1_9STRA1.210e-8974.25Actin-related protein 2/3 complex subunit 4 n=1 Ta... [more]
W4GJL2_9STRA1.270e-8975.45Actin-related protein 2/3 complex subunit 4 n=5 Ta... [more]
A0A3R6WI01_9STRA2.370e-8976.65Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
K3WN29_GLOUD4.810e-8975.45Actin-related protein 2/3 complex subunit 4 n=27 T... [more]
A0A7S2CG59_9STRA2.090e-8872.02Actin-related protein 2/3 complex subunit 4 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4884contigH-elongata_contig4884:1402..2867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score323.9
Seed ortholog evalue4.4e-86
Seed eggNOG ortholog2880.D7FKQ4
Preferred nameARPC4
KEGG rclassRC00048,RC00116
KEGG koko:K00275,ko:K05755,ko:K16608
KEGG ReactionR00277,R00278,R01710,R01711
KEGG Pathwayko00750,ko01100,ko01120,ko04144,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,map00750,map01100,map01120,map04144,map04666,map04810,map05100,map05130,map05131,map05132
KEGG ModuleM00124
GOsGO:0000001,GO:0000147,GO:0000902,GO:0001667,GO:0002009,GO:0002252,GO:0002253,GO:0002376,GO:0002429,GO:0002431,GO:0002433,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003674,GO:0003779,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005885,GO:0005938,GO:0006810,GO:0006887,GO:0006897,GO:0006909,GO:0006928,GO:0006950,GO:0006996,GO:0007005,GO:0007010,GO:0007015,GO:0007154,GO:0007155,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008360,GO:0009611,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0010631,GO:0010638,GO:0012506,GO:0015629,GO:0016020,GO:0016043,GO:0016192,GO:0016331,GO:0016477,GO:0019899,GO:0022603,GO:0022604,GO:0022607,GO:0022610,GO:0023052,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030041,GO:0030139,GO:0030175,GO:0030479,GO:0030659,GO:0030666,GO:0030670,GO:0030832,GO:0030833,GO:0030838,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031090,GO:0031143,GO:0031252,GO:0031334,GO:0031410,GO:0031982,GO:0032271,GO:0032273,GO:0032501,GO:0032502,GO:0032535,GO:0032940,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0033627,GO:0034314,GO:0034622,GO:0038093,GO:0038094,GO:0038096,GO:0040011,GO:0042060,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044396,GO:0044422,GO:0044424,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045010,GO:0045335,GO:0046903,GO:0048013,GO:0048308,GO:0048311,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048598,GO:0048729,GO:0048856,GO:0048869,GO:0048870,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051258,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051646,GO:0051674,GO:0051716,GO:0060429,GO:0061024,GO:0061645,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0090130,GO:0090132,GO:0097435,GO:0097708,GO:0098588,GO:0098657,GO:0098805,GO:0098858,GO:0099568,GO:0110053,GO:0120025,GO:1902903,GO:1902905
EggNOG free text desc.Functions as actin-binding component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament
EggNOG OGsKOG1876@1,KOG1876@2759
EC1.4.3.5
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionActin-related protein 2/3 complex subunit ARPC4 or p20-Arc (Arp2/3 complex 20 kDa subunit)
Ec32 orthologEc-21_001730.1
Exons3
Model size513
Cds size513
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4884.12054.1prot_H-elongata_contig4884.12054.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4884 1402..2867 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930804.1282818-CDS-H-elongata_contig4884:1401..15231622930804.1282818-CDS-H-elongata_contig4884:1401..1523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4884 1402..1523 +
1691679577.3378503-CDS-H-elongata_contig4884:1401..15231691679577.3378503-CDS-H-elongata_contig4884:1401..1523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4884 1402..1523 +
1622930804.1409419-CDS-H-elongata_contig4884:2331..25391622930804.1409419-CDS-H-elongata_contig4884:2331..2539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4884 2332..2539 +
1691679577.354966-CDS-H-elongata_contig4884:2331..25391691679577.354966-CDS-H-elongata_contig4884:2331..2539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4884 2332..2539 +
1622930804.1563005-CDS-H-elongata_contig4884:2684..28671622930804.1563005-CDS-H-elongata_contig4884:2684..2867Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4884 2685..2867 +
1691679577.3659675-CDS-H-elongata_contig4884:2684..28671691679577.3659675-CDS-H-elongata_contig4884:2684..2867Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4884 2685..2867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4884.12054.1

>prot_H-elongata_contig4884.12054.1 ID=prot_H-elongata_contig4884.12054.1|Name=mRNA_H-elongata_contig4884.12054.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp
QANTLRPYLNAIRGTLDAALCIRNFPSQTVERHNKPEVEIKSSKELLLNP
VTICRNEQERCLIETSVNSVRVSIAVKQADEIETILCHRFTSFLMQRAEQ
FMVMRRKPAEGYDISFLVTHTHLEKLWKHKLIDFIIQFMEDIDKEISGMK
IAINARGRMIAQQYMLQFVQ*
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mRNA from alignment at H-elongata_contig4884:1402..2867+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4884.12054.1 ID=mRNA_H-elongata_contig4884.12054.1|Name=mRNA_H-elongata_contig4884.12054.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1466bp|location=Sequence derived from alignment at H-elongata_contig4884:1402..2867+ (Himanthalia elongata Himel1 dioecious)
CAGGCGAATACTTTGCGGCCATACCTCAATGCCATACGTGGGACCTTGGA
TGCTGCACTTTGTATCCGGAACTTCCCTTCGCAGACTGTCGAAAGGCATA
ATAAGCCAGAGGTAGAGATCAAGTGAGTAAATACAGCCTTGGAGGTACCG
AAGCCTGGCGTAGTTCCGCGAAGCTGGGTGAACTGGTTGCAGCAGTAGTT
ATTCCCCCCCTACAACAAACGAACTTGCATACGCTTGTTTTTGTTGTGTC
GATGTACGGCATGGCGCGCGACTTAGGTTTTCGTGAACTCTAATCCACCG
ACCTCTAAATAGCTCTAGTCCGTCAAAGTGTAAGTGAGAGGGGGAGGACA
TATGTGCCCTAGGACACTATTATATAAAGTATTTTAAATAAAAGTCCCTC
TGTCTCGTGGAGTATTTGCAAAGTCCACCAGAAGGTAACTTGTATTAGAT
CATAGTGAGGTTCGTCATTTCGTTTAAAGACGCGATAACTAACAAGCTAT
TGCGGGTACCAAGTAAATTATCCATAGTGATTTCATAACCTTCAACTCAA
TATCATATTCACCTCCAAAATGAGGGCGGCAACGTGGAAAAATGAGTGGG
GGATTGCTGTTTCGCTGCCTCCGAATGGGGCCTTGGCCATCAGTGCCAAA
ATAATCAGCATTTGCGTCATTTTTGGCTTGTTCCGAGGATTCTTATGCAA
ATATCTTAGTATAGGGTTCCTTGGCGCACTTGTTGCGGGCGACTGTATTC
GAAGTGCTCCCCAAAGCATAAACCTATTCTGAGTATGTGGCTAAAATAAT
GCTGTTGGCGAAAGATTGAAATGAAGTCTCCCCAAATCAAATTCTGAAAC
ATTTGGCTGACACTAGTGAATCCAATATATTAAGGGGTGACGAGCAAGGA
TCAATTCCTTTTTCGCGTATTTGCCTCCAGGTCGAGCAAGGAGCTTCTCC
TCAACCCTGTAACCATATGCCGCAACGAGCAAGAGCGTTGTCTCATCGAA
ACCAGCGTCAACAGCGTTCGAGTCAGCATTGCCGTGAAGCAGGCTGACGA
AATCGAGACTATACTTTGTCACAGATTCACTAGCTTTTTGATGCAACGTG
CGGAGCAGTTTATGGTTATGCGGCGGAAGCCTGCCGAGGTAAGAAGGCGC
CCCCTTGCCTCAATTTATATCATGAGTGTACGTTCTCTTGCGAGATAAAA
AAAGCAGGACGCCTCTCCATCCAAGTGATTTCACGTGTTAGAGTGACGCT
TCTGCATTTTGACTTCGAAAAACTTCTTCCCAGGGATACGACATCAGCTT
CCTCGTGACTCATACTCACTTGGAGAAACTGTGGAAACACAAGCTCATCG
ATTTCATCATCCAGTTCATGGAAGACATCGACAAGGAGATCAGTGGCATG
AAGATTGCCATCAACGCCAGGGGAAGAATGATAGCTCAACAGTACATGTT
GCAGTTCGTCCAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig4884:1402..2867+

>mRNA_H-elongata_contig4884.12054.1 ID=mRNA_H-elongata_contig4884.12054.1|Name=mRNA_H-elongata_contig4884.12054.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1026bp|location=Sequence derived from alignment at H-elongata_contig4884:1402..2867+ (Himanthalia elongata Himel1 dioecious)
CAGGCGAATACTTTGCGGCCATACCTCAATGCCATACGTGGGACCTTGGA
TGCTGCACTTTGTATCCGGAACTTCCCTTCGCAGACTGTCGAAAGGCATA
ATAAGCCAGAGGTAGAGATCAACAGGCGAATACTTTGCGGCCATACCTCA
ATGCCATACGTGGGACCTTGGATGCTGCACTTTGTATCCGGAACTTCCCT
TCGCAGACTGTCGAAAGGCATAATAAGCCAGAGGTAGAGATCAAGTCGAG
CAAGGAGCTTCTCCTCAACCCTGTAACCATATGCCGCAACGAGCAAGAGC
GTTGTCTCATCGAAACCAGCGTCAACAGCGTTCGAGTCAGCATTGCCGTG
AAGCAGGCTGACGAAATCGAGACTATACTTTGTCACAGATTCACTAGCTT
TTTGATGCAACGTGCGGAGCAGTTTATGGTTATGCGGCGGAAGCCTGCCG
AGGTCGAGCAAGGAGCTTCTCCTCAACCCTGTAACCATATGCCGCAACGA
GCAAGAGCGTTGTCTCATCGAAACCAGCGTCAACAGCGTTCGAGTCAGCA
TTGCCGTGAAGCAGGCTGACGAAATCGAGACTATACTTTGTCACAGATTC
ACTAGCTTTTTGATGCAACGTGCGGAGCAGTTTATGGTTATGCGGCGGAA
GCCTGCCGAGGGATACGACATCAGCTTCCTCGTGACTCATACTCACTTGG
AGAAACTGTGGAAACACAAGCTCATCGATTTCATCATCCAGTTCATGGAA
GACATCGACAAGGAGATCAGTGGCATGAAGATTGCCATCAACGCCAGGGG
AAGAATGATAGCTCAACAGTACATGTTGCAGTTCGTCCAGTGAGGATACG
ACATCAGCTTCCTCGTGACTCATACTCACTTGGAGAAACTGTGGAAACAC
AAGCTCATCGATTTCATCATCCAGTTCATGGAAGACATCGACAAGGAGAT
CAGTGGCATGAAGATTGCCATCAACGCCAGGGGAAGAATGATAGCTCAAC
AGTACATGTTGCAGTTCGTCCAGTGA
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