mRNA_H-elongata_contig11509.1203.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11509.1203.1
Unique NamemRNA_H-elongata_contig11509.1203.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11509.1203.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 6.980e-29
Identity = 55/80 (68.75%), Postives = 67/80 (83.75%), Query Frame = 2
Query:    2 NGMSWVIVDGAILDVGNFSRRHPGGARVIVNALGTDITNELKGVDQSIGRAMSFSPNEHSESAWELARSMVVGYIEEEDD 241
            NG SWV+VDGAILDV +F++RHPGG R+I+NALGTDIT EL G D S+G AMSFSP+ HSE AW + R++VVGYIEE +D
Sbjct: 1164 NGQSWVLVDGAILDVSDFAKRHPGGQRLIINALGTDITQELLGEDLSVGHAMSFSPHVHSERAWTILRTLVVGYIEEGED 1243          
BLAST of mRNA_H-elongata_contig11509.1203.1 vs. uniprot
Match: D7FX04_ECTSI (Dopamine beta-monooxygenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX04_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 1.550e-27
Identity = 53/76 (69.74%), Postives = 62/76 (81.58%), Query Frame = 2
Query:    2 NGMSWVIVDGAILDVGNFSRRHPGGARVIVNALGTDITNELKGVDQSIGRAMSFSPNEHSESAWELARSMVVGYIE 229
            NG SWV+VDGAILDV  F++RHPGG R+I+NALGTDIT EL G D S+G AMSFSP+ HSE AW + R +VVGYIE
Sbjct:  474 NGQSWVLVDGAILDVSEFAQRHPGGRRLIINALGTDITQELLGEDLSVGHAMSFSPHAHSERAWTILRRLVVGYIE 549          
BLAST of mRNA_H-elongata_contig11509.1203.1 vs. uniprot
Match: D8LFE6_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE6_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 3.970e-27
Identity = 50/80 (62.50%), Postives = 65/80 (81.25%), Query Frame = 2
Query:    2 NGMSWVIVDGAILDVGNFSRRHPGGARVIVNALGTDITNELKGVDQSIGRAMSFSPNEHSESAWELARSMVVGYIEEEDD 241
            NG SW++VDGAILDV  F+ RHPGG R+I+NALGTD+T EL G + S+G AMSFSPN HSE AW + + +V+GYI+E+D+
Sbjct:  992 NGQSWLLVDGAILDVSEFTARHPGGRRLILNALGTDVTAELLGEEMSVGHAMSFSPNVHSERAWTILKGLVIGYIDEDDE 1071          
BLAST of mRNA_H-elongata_contig11509.1203.1 vs. uniprot
Match: A0A6H5JQ31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ31_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 4.190e-25
Identity = 48/79 (60.76%), Postives = 64/79 (81.01%), Query Frame = 2
Query:    2 NGMSWVIVDGAILDVGNFSRRHPGGARVIVNALGTDITNELKGVDQSIGRAMSFSPNEHSESAWELARSMVVGYIEEED 238
            +G SW++VD A+LDV +F+ RHPGG R+I+NALGTD+T EL G + S+G AMSF P+ H+ SAW + RS+VVGYIEE+D
Sbjct:  898 SGQSWLMVDEAVLDVSDFAHRHPGGRRLILNALGTDVTQELLGQENSVGHAMSFPPHAHTGSAWRIIRSLVVGYIEEKD 976          
BLAST of mRNA_H-elongata_contig11509.1203.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 4.210e-25
Identity = 49/82 (59.76%), Postives = 67/82 (81.71%), Query Frame = 2
Query:    2 NGMSWVIVDGAILDVGNFSRRHPGGARVIVNALGTDITNELKGVDQSIGRAMSFSPNEHSESAWELARSMVVGYIEEEDDSE 247
            +G SW++VD A+LDV +F++RHPGG R+I+NALGTD+T EL G + S+G AMSF P+ H+ SAW + RS+VVGYIEE+D +E
Sbjct:  893 SGQSWLMVDEAVLDVSDFAQRHPGGRRLILNALGTDVTQELIGQENSVGHAMSFPPHVHTGSAWRIIRSLVVGYIEEKDAAE 974          
BLAST of mRNA_H-elongata_contig11509.1203.1 vs. uniprot
Match: D7G7J1_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J1_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.070e-24
Identity = 47/79 (59.49%), Postives = 65/79 (82.28%), Query Frame = 2
Query:    2 NGMSWVIVDGAILDVGNFSRRHPGGARVIVNALGTDITNELKGVDQSIGRAMSFSPNEHSESAWELARSMVVGYIEEED 238
            +G +W++VD A+LDV +F++RHPGG R+I+NALGTD+T EL G + S+G AMSF P+ H+ SAW + RS+VVGYIEE+D
Sbjct:  894 SGQTWLMVDEAVLDVSDFAQRHPGGRRLILNALGTDVTQELLGQENSVGHAMSFPPHVHTGSAWRIIRSLVVGYIEEKD 972          
BLAST of mRNA_H-elongata_contig11509.1203.1 vs. uniprot
Match: D8LB74_ECTSI (Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB74_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 9.390e-24
Identity = 48/83 (57.83%), Postives = 68/83 (81.93%), Query Frame = 2
Query:    2 NGMSWVIVDGAILDVGNFSRRHPGGARVIVNALGTDITNELKGVDQSIGRAMS-FSPNEHSESAWELARSMVVGYIEEEDDSE 247
            NG SWVIVDGA+L+V +F++RHPGG R+I+NA+GTD+T+E  G + S+G   + + P+ H+++A E+ARS+VVGYIEEEDD E
Sbjct:  129 NGRSWVIVDGAVLNVSDFAKRHPGGIRLIINAMGTDVTSEFLGENASVGNPGTVYKPHRHTDTALEIARSLVVGYIEEEDDME 211          
BLAST of mRNA_H-elongata_contig11509.1203.1 vs. uniprot
Match: A0A6H5JUS3_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS3_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.840e-23
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = 2
Query:    2 NGMSWVIVDGAILDVGNFSRRHPGGARVIVNALGTDITNELKGVDQSIGRAMSFSPNEHSE---------SAWELARSMVVGYIEEEDDSE 247
            NG SW++VD AILDV  F+ RHPGG R+I+NA GTD+T+EL G D S+G AMSFSPN HSE          AW + + +V+ YI+E+D+ E
Sbjct:   79 NGQSWLLVDDAILDVPEFAARHPGGWRLIINAPGTDVTDELLGEDMSVGHAMSFSPNVHSEVSQIVVFVVRAWTILKRLVIDYIDEDDEQE 169          
BLAST of mRNA_H-elongata_contig11509.1203.1 vs. uniprot
Match: A0A6H5JX59_9PHAE (Cytochrome b5 heme-binding domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX59_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 3.330e-13
Identity = 32/62 (51.61%), Postives = 48/62 (77.42%), Query Frame = 2
Query:    2 NGMSWVIVDGAILDVGNFSRRHPGGARVIVNALGTDITNELKGVDQSIGRAMS-FSPNEHSE 184
            NG SWVIVDGA+L+V +F+ RHPGG R+I+NA+GTD+T+E  G + S+G   + + P+ H++
Sbjct:  200 NGRSWVIVDGAVLNVSDFAERHPGGMRLIINAMGTDVTSEFLGENASVGNPGTVYEPHPHTD 261          
BLAST of mRNA_H-elongata_contig11509.1203.1 vs. uniprot
Match: D8LFE2_ECTSI (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE2_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 5.790e-11
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 2
Query:    2 NGMSWVIVDGAILDVGNFSRRHPGGARVIVNALGTDITNELKG 130
            N  SW+ VD AILDV  F+ RHPGG R+I+NALGTD+T E+ G
Sbjct:   13 NSQSWLFVDSAILDVSEFAARHPGGRRLILNALGTDVTAEILG 55          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11509.1203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JBL8_9PHAE6.980e-2968.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX04_ECTSI1.550e-2769.74Dopamine beta-monooxygenase, putative n=1 Tax=Ecto... [more]
D8LFE6_ECTSI3.970e-2762.50Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JQ31_9PHAE4.190e-2560.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7J2_ECTSI4.210e-2559.76Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J1_ECTSI1.070e-2459.49Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LB74_ECTSI9.390e-2457.83Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JUS3_9PHAE1.840e-2353.85Cytochrome b5 heme-binding domain-containing prote... [more]
A0A6H5JX59_9PHAE3.330e-1351.61Cytochrome b5 heme-binding domain-containing prote... [more]
D8LFE2_ECTSI5.790e-1162.79Cytochrome b5 heme-binding domain-containing prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11509contigH-elongata_contig11509:7983..8525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue2.2e-22
Seed eggNOG ortholog2880.D7FX04
EggNOG free text desc.DOMON domain
EggNOG OGs2D0T2@1,2SFBV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size259
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11509.1203.1prot_H-elongata_contig11509.1203.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11509 7983..8518 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929666.9602654-CDS-H-elongata_contig11509:7982..80571622929666.9602654-CDS-H-elongata_contig11509:7982..8057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11509 7983..8057 -
1691679112.008275-CDS-H-elongata_contig11509:7982..80571691679112.008275-CDS-H-elongata_contig11509:7982..8057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11509 7983..8057 -
1622929667.0059438-CDS-H-elongata_contig11509:8341..85181622929667.0059438-CDS-H-elongata_contig11509:8341..8518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11509 8342..8518 -
1691679112.0213978-CDS-H-elongata_contig11509:8341..85181691679112.0213978-CDS-H-elongata_contig11509:8341..8518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11509 8342..8518 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929667.0247414-UTR-H-elongata_contig11509:8518..85251622929667.0247414-UTR-H-elongata_contig11509:8518..8525Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11509 8519..8525 -
1691679112.0310884-UTR-H-elongata_contig11509:8518..85251691679112.0310884-UTR-H-elongata_contig11509:8518..8525Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11509 8519..8525 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11509.1203.1

>prot_H-elongata_contig11509.1203.1 ID=prot_H-elongata_contig11509.1203.1|Name=mRNA_H-elongata_contig11509.1203.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MSWVIVDGAILDVGNFSRRHPGGARVIVNALGTDITNELKGVDQSIGRAM
SFSPNEHSESAWELARSMVVGYIEEEDDSESESG
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mRNA from alignment at H-elongata_contig11509:7983..8525-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11509.1203.1 ID=mRNA_H-elongata_contig11509.1203.1|Name=mRNA_H-elongata_contig11509.1203.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=543bp|location=Sequence derived from alignment at H-elongata_contig11509:7983..8525- (Himanthalia elongata Himel1 dioecious)
GAATGGAATGAGCTGGGTGATTGTCGACGGTGCCATCCTGGACGTTGGCA ATTTCTCTCGGCGACACCCGGGGGGTGCGAGGGTCATCGTGAATGCTCTA GGCACGGATATCACCAACGAGCTGAAGGGAGTAGACCAGTCGATCGGGCG CGCCATGTCCTTCTCGCCTAATGAGCACAGCGAGGTACGACAACAGTTAT TCAACGGTTGGCTTGGAGCACGCTTCAGCCAAGCTGACACGGCAAATCTC TCGGGCTTTTAGACGCTTGATATTTTAGCTGTTTTGAGCCAACACCTGAC ATTTTTATCTTTGGCCTATGACATGTATTTTGCTCGATGTATTTTTGCAC CCGCCCTTCCGCTCTCCCCGATGGACACTTCAAGCCTAACGACGCCTGAC CCCCCCCCATACAGCACACAATACCAAAGCAAAAATGCGTCCTCGCTAAC ACACGTTTTGAAACAAAGAGCGCTTGGGAGCTGGCGCGATCTATGGTGGT GGGCTATATCGAGGAGGAAGATGACTCCGAGAGTGAATCGGGT
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Coding sequence (CDS) from alignment at H-elongata_contig11509:7983..8525-

>mRNA_H-elongata_contig11509.1203.1 ID=mRNA_H-elongata_contig11509.1203.1|Name=mRNA_H-elongata_contig11509.1203.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig11509:7983..8525- (Himanthalia elongata Himel1 dioecious)
ATGAGCTGGGTGATTGTCGACGGTGCCATCCTGGACGTTGGCAATTTCTC
TCGGCGACACCCGGGGGGTGCGAGGGTCATCGTGAATGCTCTAGGCACGG
ATATCACCAACGAGCTGAAGGGAGTAGACCAGTCGATCGGGCGCGCCATG
TCCTTCTCGCCTAATGAGCACAGCGAGATGAGCTGGGTGATTGTCGACGG
TGCCATCCTGGACGTTGGCAATTTCTCTCGGCGACACCCGGGGGGTGCGA
GGGTCATCGTGAATGCTCTAGGCACGGATATCACCAACGAGCTGAAGGGA
GTAGACCAGTCGATCGGGCGCGCCATGTCCTTCTCGCCTAATGAGCACAG
CGAGAGCGCTTGGGAGCTGGCGCGATCTATGGTGGTGGGCTATATCGAGG
AGGAAGATGACTCCGAGAGTGAATCGGGTAGCGCTTGGGAGCTGGCGCGA
TCTATGGTGGTGGGCTATATCGAGGAGGAAGATGACTCCGAGAGTGAATC
GGGT
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