prot_H-elongata_contig48529.12011.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig48529.12011.1
Unique Nameprot_H-elongata_contig48529.12011.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length330
Homology
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Match: D8LLW8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLW8_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 2.850e-65
Identity = 111/142 (78.17%), Postives = 122/142 (85.92%), Query Frame = 0
Query:    1 MIFVVGILVNYGNIVGDDESAGGTGLVDVHDASAHLLLALLPTTGMAVIALYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPESYFRVANETGQVLLLLSLIAVGREIGREVQAADDFSSFLEKENELETG 142
            ++FVV ILVNY   +GDD  AGGTGLV+  DAS HLLLALLPTTGM  +ALYIA YMWKYGN ASIVVQ+T+CNGWMF FLGTLALL GQVPPE  FRV NETGQVL LLS+IA+GREIGREVQAAD+FS FLEKENELE+G
Sbjct:  135 LLFVVHILVNYDIGIGDDNKAGGTGLVETQDASLHLLLALLPTTGMTALALYIAVYMWKYGNHASIVVQSTVCNGWMFLFLGTLALLGGQVPPEWCFRVVNETGQVLFLLSVIAIGREIGREVQAADNFSHFLEKENELESG 276          
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Match: A0A835YJZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJZ6_9STRA)

HSP 1 Score: 138 bits (348), Expect = 5.360e-34
Identity = 65/140 (46.43%), Postives = 93/140 (66.43%), Query Frame = 0
Query:    2 IFVVGILVNYGNIVGDDESAGGTGLVDVHDASAHLLLALLPTTGMAVIALYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPESYFRVANETGQVLLLLSLIAVGREIGREVQAADDFSSFLEKENELET 141
            +F++GILV + +I  DD +AG  G      AS   +L L+P T MA ++LY++ +MW+YGN+ASIVV +T CN WM   LG+L +LAGQ+PP   FR +N  GQ +LL +++ V  E+ RE  A D F+ FL +EN L+T
Sbjct:  139 LFILGILVYFHSIGSDDAAAGTGGYTQFGGASVQFILCLVPATAMAAVSLYLSIFMWRYGNNASIVVHSTACNRWMLLLLGSLCMLAGQIPPAPAFRASNALGQTILLATMLVVYHEVEREAAARDHFAEFLAEENRLDT 278          
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Match: K0TIK0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TIK0_THAOC)

HSP 1 Score: 82.8 bits (203), Expect = 1.090e-14
Identity = 39/140 (27.86%), Postives = 81/140 (57.86%), Query Frame = 0
Query:    2 IFVVGILVNYGNIVG--DDESAGGTGLVDV------HDASAHLLLALLPTTGMAVIALYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPESYFRVANETGQVLLLLSLIAVGREIGREVQAADDFSSFL 133
            + V+G+LVN+  +      +  G  G   V       D+   L+++LLPT  + +++ Y++  +W+YG ++S+VV ++MCN W +PF G LAL   Q+  E  + + + TG ++ +++++    E+ +++   D+ ++FL
Sbjct:   61 LLVIGLLVNFDILYNGISHDLVGRAGWWSVFEGDGDEDSQIFLIVSLLPTLILILVSFYLSIVLWRYGTESSMVVHSSMCNPWFYPFFGMLALALTQLFDEKLYNIMSNTGYLVYIITVLLAMVEVDKDMVKNDEVANFL 200          
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Match: A0A1E7FWF5_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWF5_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.690e-13
Identity = 51/173 (29.48%), Postives = 89/173 (51.45%), Query Frame = 0
Query:    4 VVGILVNYGNIVGDDESAGGTGLVDV---------HDASAHLLLALLPTTGMAVIALYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPESYFRVANETGQVLLLLSLIAVGREIGREVQAADDFSSFLE-----KENELETGITEHGKHTP-TIEYPLGSNR 161
            V+ I+VN+  +  D + AG  G + V           + +H++LALL     ++  LY A  +W+YGN+ S+ + T++ N WM P +G +A+ AGQ+     F V +  G  +  LS++ +  EI +++  + +  SFL      ++  LE  + E  +  P T+E   G NR
Sbjct:  176 VLSIIVNFDVVWSDADVAGRAGWITVVMTKTKDWNPSSLSHVILALLSMFFTSISCLYFAVLLWRYGNELSMTIYTSIFNPWMTPLVGAVAMFAGQMLGPRLFPVLSNFGICVHQLSMLIIMVEIRKDLGKSVELGSFLGAVWSGEQMSLENNVNEETEIDPSTLETTKGENR 348          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LLW8_ECTSI2.850e-6578.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YJZ6_9STRA5.360e-3446.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0TIK0_THAOC1.090e-1427.86Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A1E7FWF5_9STRA3.690e-1329.48Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 55..65
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 66..88
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 89..329
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..33
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 34..54
NoneNo IPR availableTMHMMTMhelixcoord: 65..87
NoneNo IPR availableTMHMMTMhelixcoord: 36..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48529contigH-elongata_contig48529:489..2476 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48529.12011.1mRNA_H-elongata_contig48529.12011.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig48529 422..3480 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig48529.12011.1 ID=prot_H-elongata_contig48529.12011.1|Name=mRNA_H-elongata_contig48529.12011.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=330bp
MIFVVGILVNYGNIVGDDESAGGTGLVDVHDASAHLLLALLPTTGMAVIA
LYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPESYFRVA
NETGQVLLLLSLIAVGREIGREVQAADDFSSFLEKENELETGITEHGKHT
PTIEYPLGSNRVGLEGEPKDLVVASIGVEEKVEGVRKNAAAAEEPPIGHD
SPAIGEEDEGVLGVLGDHNLDDVTRPMGRHAMRAVGGRGGGGQLRQRTGL
FGNKKGVSLLEDREEDFTGFSENEEERHDVGRDTRPRKSGTDLIVTSPSP
PTVVDAAAEENRSSAPRSGARGKADYVIY*
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