mRNA_H-elongata_contig48529.12011.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48529.12011.1
Unique NamemRNA_H-elongata_contig48529.12011.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Match: D8LLW8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLW8_ECTSI)

HSP 1 Score: 317 bits (812), Expect = 3.570e-101
Identity = 158/197 (80.20%), Postives = 173/197 (87.82%), Query Frame = 1
Query:   19 ASVIPLFLVIIFEVAYAVHKRRSVKFCGIVFDQGHRRSVEPCSWFLRNFVRIVAVMIFVVGILVNYGNIVGDDESAGGTGLVDVHDASAHLLLALLPTTGMAVIALYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPESYFRVANETGQVLLLLSLIAVGREIGREVQAADDFSSFLEKENELETG 609
            A+VIPLFLV+ FEVAYAVHKRRSV+FCGIVFDQGHRR VEPCSW LRNFV IV+V++FVV ILVNY   +GDD  AGGTGLV+  DAS HLLLALLPTTGM  +ALYIA YMWKYGN ASIVVQ+T+CNGWMF FLGTLALL GQVPPE  FRV NETGQVL LLS+IA+GREIGREVQAAD+FS FLEKENELE+G
Sbjct:   80 AAVIPLFLVVTFEVAYAVHKRRSVQFCGIVFDQGHRRGVEPCSWVLRNFVGIVSVLLFVVHILVNYDIGIGDDNKAGGTGLVETQDASLHLLLALLPTTGMTALALYIAVYMWKYGNHASIVVQSTVCNGWMFLFLGTLALLGGQVPPEWCFRVVNETGQVLFLLSVIAIGREIGREVQAADNFSHFLEKENELESG 276          
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Match: A0A835YJZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJZ6_9STRA)

HSP 1 Score: 220 bits (561), Expect = 3.670e-64
Identity = 105/196 (53.57%), Postives = 140/196 (71.43%), Query Frame = 1
Query:   19 ASVIPLFLVIIFEVAYAVHKRRSVKFCGIVFDQGHRRSVEPCSWFLRNFVRIVAVMIFVVGILVNYGNIVGDDESAGGTGLVDVHDASAHLLLALLPTTGMAVIALYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPESYFRVANETGQVLLLLSLIAVGREIGREVQAADDFSSFLEKENELET 606
            A V+PLFLV +FE+AY VHK RSVKFCGIVFDQGHR + EPCSWFLR+ VR+ A+ +F++GILV + +I  DD +AG  G      AS   +L L+P T MA ++LY++ +MW+YGN+ASIVV +T CN WM   LG+L +LAGQ+PP   FR +N  GQ +LL +++ V  E+ RE  A D F+ FL +EN L+T
Sbjct:   83 ALVVPLFLVALFEMAYTVHKTRSVKFCGIVFDQGHRINTEPCSWFLRHAVRMCALGLFILGILVYFHSIGSDDAAAGTGGYTQFGGASVQFILCLVPATAMAAVSLYLSIFMWRYGNNASIVVHSTACNRWMLLLLGSLCMLAGQIPPAPAFRASNALGQTILLATMLVVYHEVEREAAARDHFAEFLAEENRLDT 278          
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Match: A0A7R9U8D5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8D5_9STRA)

HSP 1 Score: 150 bits (379), Expect = 3.030e-38
Identity = 84/231 (36.36%), Postives = 136/231 (58.87%), Query Frame = 1
Query:   19 ASVIPLFLVIIFEVAYAVHKRRSVKFCGIVFDQGHRRSVEPCSWFLRNFVRIVAVMIFVVGILVNYGNIVGDDESAGGTGLVDVHDA-SAHLLLALLPTTGMAVIALYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPESYFRVANETGQVLLLLSLIAVGREIGREVQAADDFSSFLEKENELETGITEHGKHTPTIEYPLGSNRVGLEGEPKDLVVAS 708
            A +IPL LV +FE+AY VHK RSVKFCGI FD+GHR+S    S+ +R   + +A  I  + ILVN+  +  DDE AG TG   +    +AH++ A+LP+  +A+   YI+  +W YG++ S+ V T+  N W   F+G +A +AGQ+  + ++ V +  G+ +LL ++  +   I R+++  + F+ +L ++ E ET        + T+  P+G  R+  E E + L V S
Sbjct:  113 AFIIPLLLVYVFELAYQVHKHRSVKFCGITFDEGHRKSFGLKSFLVRRSTQFIATAIVAMNILVNFDLLSVDDEDAGSTGYAGLERGENAHIIFAILPSIILALYVAYISVALWLYGSNNSMTVYTSFVNPWGIVFVGGIAQVAGQIFNDEHYPVTSNGGETVLLSTIAFLIPHIVRDLEDVESFAKYLAEQEEEET--------SKTLRRPVGLPRIH-ESEQEALTVDS 334          
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Match: A0A7S3Y231_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y231_HETAK)

HSP 1 Score: 149 bits (375), Expect = 5.570e-38
Identity = 80/195 (41.03%), Postives = 118/195 (60.51%), Query Frame = 1
Query:    4 FLGSPASVIPLFLVIIFEVAYAVHKRRSVKFCGIVFDQGHRRSVEPCSWFLRNFVRIVAVMIFVVGILVNYGNIVGDDESAGGTGLVDVHDASA-HLLLALLPTTGMAVIALYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPESYFRVANETGQVLLLLSLIAVGREIGREVQAADDFSSFLE 585
            +L   + V+PLFLVI F++AY VHK RSV F  I FD+GHR+ VEP SW +RN +R+VA  +  V  LVNY N++G    AG +G +D   A    + L+LLP T +A   L IA  +W YG   ++V+  T+ N W+  FLG +  LAG V P   + V +  G++ LL+ +I +   I ++ Q ++ F+ FL+
Sbjct:   77 YLALHSLVVPLFLVISFDIAYMVHKNRSVNFFCISFDEGHRKRVEPHSWVMRNLMRMVAACLVAVNALVNY-NVLGAAADAGRSGYLDWSAADPLEVTLSLLPGTVLAAFNLGIAFRLWLYGTQRALVIHATVWNEWILLFLGAMGQLAGLVAPTELYSVTSNAGEIFLLMCIIFIQYTIKKDFQLSNQFNLFLD 270          
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Match: A0A6U6D2G5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6D2G5_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.100e-36
Identity = 81/210 (38.57%), Postives = 131/210 (62.38%), Query Frame = 1
Query:   28 IPLFLVIIFEVAYAVHKRRSVKFCGIVFDQGHRR----SVEPCSWFLRNFVRIVAVMIFVVGILVNYGNIVGD----DESAGGTGLVDV------HDASAHLLLALLPTTGMAVIALYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPESYFRVANETGQVLLLLSLIAVGREIGREVQAADDFSSFLEKENELETGIT 615
            +P+ LV+ FE+ Y VHK+R V FCG+ FD+G R     +    S+ LRN +RI+AV++F +GI+ N+ +++GD    DE AG  G   +       D   HLLL+LLPT  +A+ + Y +  +W+YG ++S+VV +++ N W  PF GTLAL  GQV  E +F + +  G ++ +++L+ +  E+ +++ AAD+FS FL +  E+   IT
Sbjct:   94 VPILLVVSFELTYLVHKKRGVNFCGMYFDEGRRVQKIITTPVKSFLLRNLIRILAVILFAMGIVGNF-DLLGDVSTVDELAGRAGWWSLVKDPRPWDQKWHLLLSLLPTAVLALCSFYFSFLLWRYGTESSMVVHSSILNPWFNPFFGTLALAVGQVFSEKWFPLTSNIGLLIFVITLLLLMVEVDKDMVAADNFSVFLTEAAEMGDKIT 302          
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Match: A0A7S1YZR4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YZR4_TRICV)

HSP 1 Score: 142 bits (359), Expect = 3.890e-35
Identity = 78/201 (38.81%), Postives = 125/201 (62.19%), Query Frame = 1
Query:   19 ASVIPLFLVIIFEVAYAVHKRRSVKFCGIVFDQGHRRS---VEPC-SWFLRNFVRIVAVMIFVVGILVNY---GNIVGDDESAGGTG----LVDVHDAS--AHLLLALLPTTGMAVIALYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPESYFRVANETGQVLLLLSLIAVGREIGREVQAADDFSSFL 582
            A+ +PL L++ FE+ Y VHKRRSV FCG+ FD+G R S     P  S+ LRNF+R++AV +  +GI+ N+   G++   D  AG  G    + D    S   HLLL+LLP+  + +   Y +  +W+YG ++S+VV +++ N +  PF GTLAL  GQ+ PE +F + +  G ++  ++L+ +  E+ +++ AADDF+ FL
Sbjct:   92 ATQVPLLLIVTFELTYLVHKRRSVNFCGMYFDEGRRVSKIITTPMKSFVLRNFIRMLAVFLLAMGIMGNFDLLGDVTQVDSLAGRAGWWALVQDPRGWSKKGHLLLSLLPSAVLVLCCFYFSFLLWRYGTESSMVVHSSILNPYFSPFFGTLALATGQLFPERWFPLTSNVGLLVFCITLLLLMSEVDKDMVAADDFAGFL 292          
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Match: K0TIK0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TIK0_THAOC)

HSP 1 Score: 130 bits (326), Expect = 1.640e-31
Identity = 67/199 (33.67%), Postives = 116/199 (58.29%), Query Frame = 1
Query:   13 SPASVIPLFLVIIFEVAYAVHKRRSVKFCGIVFDQGHR-RSVEPCSWFLRNFVRIVAVMIFVVGILVNYGNIVG--DDESAGGTGLVDV------HDASAHLLLALLPTTGMAVIALYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPESYFRVANETGQVLLLLSLIAVGREIGREVQAADDFSSFL 582
            +P    P  L+ IFE+ Y   KRRSV FCG+ FDQG R R     S  LRNF+R +A+ + V+G+LVN+  +      +  G  G   V       D+   L+++LLPT  + +++ Y++  +W+YG ++S+VV ++MCN W +PF G LAL   Q+  E  + + + TG ++ +++++    E+ +++   D+ ++FL
Sbjct:    2 APLPQFPALLMTIFELTYLTMKRRSVNFCGMQFDQGVRVRDTMVMSCLLRNFIRTLALALLVIGLLVNFDILYNGISHDLVGRAGWWSVFEGDGDEDSQIFLIVSLLPTLILILVSFYLSIVLWRYGTESSMVVHSSMCNPWFYPFFGMLALALTQLFDEKLYNIMSNTGYLVYIITVLLAMVEVDKDMVKNDEVANFL 200          
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Match: A0A7S4RTW4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RTW4_9STRA)

HSP 1 Score: 132 bits (332), Expect = 4.520e-31
Identity = 72/206 (34.95%), Postives = 119/206 (57.77%), Query Frame = 1
Query:   28 IPLFLVIIFEVAYAVHKRRSVKFCGIVFDQGHR--RSVEPC---SWFLRNFVRIVAVMIFVVGILVNYG---NIVGDDESAGGTGLVDVHDA-------------SAHLLLALLPTTGMAVIALYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPESYFRVANETGQVLLLLSLIAVGREIGREVQAADDFSSFL 582
            +P+ L   FE  Y VHKRRSV FCG+ FD+G R  R +      S+ LRNF+R +AV++ V+G++VN+    N+V  D  AG  G   + +              + HL L+LLPT  + + + Y +A +W+YG ++S+VV ++  N W   F GT+ L  G+   E ++ +++ TG VL ++S + +  E+ ++++AA +F  FL
Sbjct:   96 VPILLQSTFETCYLVHKRRSVNFCGMYFDEGRRVNRGIATTPMKSFILRNFIRAIAVLLLVMGLVVNFDLLRNVVEVDRLAGRAGWWPLFERKNNAEGQQLDFSENTHLFLSLLPTAILILCSFYFSALLWRYGTESSMVVHSSCWNPWFSLFFGTIFLFIGECFSEKWYPISSNTGFVLFIISYLHLMTEVDKDMKAASEFVEFL 301          
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Match: A0A7S2KLA8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KLA8_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.000e-29
Identity = 61/159 (38.36%), Postives = 99/159 (62.26%), Query Frame = 1
Query:   28 IPLFLVIIFEVAYAVHKRRSVKFCGIVFDQGHR-RSVEPCSWFLRNFVRIVAVMIFVVGILVNYGNIVGD---DESAGGTGLVDVHDASA------HLLLALLPTTGMAVIALYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPESYF 474
            +P+ L+++FEV Y +HKRRSV FCG+ FD+G R  + +  S  LRN +R +A ++ V+G++VN+  I  +   DE AG  G   + +         HLLL+LLP   +  ++ Y++  MW+YG  +S++V +++CN W + F GTLA+ AGQ+  E  +
Sbjct:  101 VPILLIVMFEVTYLIHKRRSVNFCGMYFDEGRRLNNTQAMSCMLRNSIRSLATVLLVMGLMVNFDFITSNVPIDELAGRAGWWTLFEEEGTFQQELHLLLSLLPIAVLVAVSFYLSTMMWRYGTSSSMIVHSSICNPWFYCFFGTLAMAAGQLFAEQLY 259          
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Match: W7TX25_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TX25_9STRA)

HSP 1 Score: 125 bits (315), Expect = 3.910e-29
Identity = 72/205 (35.12%), Postives = 121/205 (59.02%), Query Frame = 1
Query:   19 ASVIPLFLVIIFEVAYAVHKRRSVKFCGIVFDQGHRRSVEPCSWFLRNFVRIVAVMIFVVGILVNYGNIVGD-DESAGGTGLVDVHDAS-AHLLLALLPTTGMAVIALYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPES-YFRVANETGQVLLLLSLIAVGREIGREVQAADDFSSFLEKENELETGITEHG 624
            A + PLFLV  FE  YAVHK RSVK+ GI FD+G R    PCSWFLRN VR++A+ +F +G++VN+     D  ++AG +G + +     AH  ++++P+   +++ L IAA + +YG  +++++  +   GW +  LG+L   AGQ P  +  +   +  GQV+LL+SL+   R +  ++  A   + FL ++  ++  +   G
Sbjct:   79 AVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCSWFLRNLVRLIALALFFMGLIVNFSVFFPDASDNAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSC--GWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQRLAVGG 281          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLW8_ECTSI3.570e-10180.20Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YJZ6_9STRA3.670e-6453.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9U8D5_9STRA3.030e-3836.36Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3Y231_HETAK5.570e-3841.03Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6U6D2G5_9STRA1.100e-3638.57Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1YZR4_TRICV3.890e-3538.81Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
K0TIK0_THAOC1.640e-3133.67Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S4RTW4_9STRA4.520e-3134.95Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2KLA8_9STRA1.000e-2938.36Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
W7TX25_9STRA3.910e-2935.12Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48529contigH-elongata_contig48529:422..3480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score220.3
Seed ortholog evalue1.3e-54
Seed eggNOG ortholog2880.D8LLW8
EggNOG OGs28NE5@1,2QUZP@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-14_001970.1
Exons5
Model size1240
Cds size990
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930799.4274356-UTR-H-elongata_contig48529:421..4881622930799.4274356-UTR-H-elongata_contig48529:421..488Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48529 422..488 -
1691679575.3917124-UTR-H-elongata_contig48529:421..4881691679575.3917124-UTR-H-elongata_contig48529:421..488Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48529 422..488 -
1622930799.5435183-UTR-H-elongata_contig48529:2476..25451622930799.5435183-UTR-H-elongata_contig48529:2476..2545Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48529 2477..2545 -
1691679575.4465501-UTR-H-elongata_contig48529:2476..25451691679575.4465501-UTR-H-elongata_contig48529:2476..2545Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48529 2477..2545 -
1622930799.5573392-UTR-H-elongata_contig48529:3366..34801622930799.5573392-UTR-H-elongata_contig48529:3366..3480Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48529 3367..3480 -
1691679575.4559398-UTR-H-elongata_contig48529:3366..34801691679575.4559398-UTR-H-elongata_contig48529:3366..3480Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48529 3367..3480 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930799.4438255-CDS-H-elongata_contig48529:488..11061622930799.4438255-CDS-H-elongata_contig48529:488..1106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48529 489..1106 -
1691679575.4110603-CDS-H-elongata_contig48529:488..11061691679575.4110603-CDS-H-elongata_contig48529:488..1106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48529 489..1106 -
1622930799.4843688-CDS-H-elongata_contig48529:1284..13741622930799.4843688-CDS-H-elongata_contig48529:1284..1374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48529 1285..1374 -
1691679575.421869-CDS-H-elongata_contig48529:1284..13741691679575.421869-CDS-H-elongata_contig48529:1284..1374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48529 1285..1374 -
1622930799.505306-CDS-H-elongata_contig48529:1884..20921622930799.505306-CDS-H-elongata_contig48529:1884..2092Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48529 1885..2092 -
1691679575.4298663-CDS-H-elongata_contig48529:1884..20921691679575.4298663-CDS-H-elongata_contig48529:1884..2092Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48529 1885..2092 -
1622930799.5222807-CDS-H-elongata_contig48529:2402..24761622930799.5222807-CDS-H-elongata_contig48529:2402..2476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48529 2403..2476 -
1691679575.4377823-CDS-H-elongata_contig48529:2402..24761691679575.4377823-CDS-H-elongata_contig48529:2402..2476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48529 2403..2476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48529.12011.1prot_H-elongata_contig48529.12011.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48529 489..2476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48529.12011.1

>prot_H-elongata_contig48529.12011.1 ID=prot_H-elongata_contig48529.12011.1|Name=mRNA_H-elongata_contig48529.12011.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=330bp
MIFVVGILVNYGNIVGDDESAGGTGLVDVHDASAHLLLALLPTTGMAVIA
LYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPESYFRVA
NETGQVLLLLSLIAVGREIGREVQAADDFSSFLEKENELETGITEHGKHT
PTIEYPLGSNRVGLEGEPKDLVVASIGVEEKVEGVRKNAAAAEEPPIGHD
SPAIGEEDEGVLGVLGDHNLDDVTRPMGRHAMRAVGGRGGGGQLRQRTGL
FGNKKGVSLLEDREEDFTGFSENEEERHDVGRDTRPRKSGTDLIVTSPSP
PTVVDAAAEENRSSAPRSGARGKADYVIY*
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mRNA from alignment at H-elongata_contig48529:422..3480-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48529.12011.1 ID=mRNA_H-elongata_contig48529.12011.1|Name=mRNA_H-elongata_contig48529.12011.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3059bp|location=Sequence derived from alignment at H-elongata_contig48529:422..3480- (Himanthalia elongata Himel1 dioecious)
GTTTTTCTCGGCTCGCCAGCGTCGGTGATACCGTTATTCTTGGTGATAAT CTTCGAGGTGGCGTACGCGGTGCACAAGAGGCGATCCGTCAAATTCTGCG GGATCGTATTCGACGTGAGATCCGGAATGGTTCTGAGGGTAGCCCGCCAC GGCTGCACTATATAGAGTACATCATATTACTGGTCTGTTGGCATGCGCAT GGTTTGGCGCGTGTTCTTCCGACACGATTCTTCATCGGCGCTGCCGTAAC AGGGCGGACTGGTTTTCGTTTGCCCTTTTTTTTGTTTTTTATTTGTTTGT TTGTTCCCCTTGTTCAAGTTAAAGCCCAACAAGCGGGGGAATGTTGGTAA CTAACCCGCCGCTTGAATATAATGTTGGGTCTTCGTGCGGATCCAAACGC TTCTGCGCATACCCTAGTACTGTACCCATATTTTGCCGCGAACACCCGCC CCCGTTTGGTCTTGGCTCAAGAGTCGGCGTCCTGCCCCCACATAGTCGCC ACCGCCTATTCGTAACGCGTTGTGTAAACGGAAAAAACGTGCGTATCAGG TGAATGATAGAGGAAAGCGGTCCTCGAGACTCGAAATGGGGTGGGGGTGG GGGCATCCCTCGAGAGCCTGCGAGACAGCTCTCGAGAGGTAGAGGTCGCC CTCTCTACAGCCTCAATTAATTTCGTTCGCCTGGCATTTTCCCCCCATAC CCACTAGTAACTTTGCGCAACCGGCGCAGTAATTAATCTCCGCTCGCGAC GTCGGGATAGAACCGATACGACGACGGTCCGGCTTCGAGACGATACGCAG TCGCACGCATCGAGGTCCTTTACTTGCCCCGCCGGTGCTCTGCTACGAGC GCACGCTTGCGGTCCGTCCTGTCCAATCACCGACCGTCCAAGCTCCGCTC GCCTCCCCCATTCCATATCTTGTGTGGACGCGCAGCAAGGGCATCGACGC AGCGTGGAGCCGTGCTCCTGGTTTCTTCGCAATTTCGTGCGGATCGTGGC GGTCATGATCTTCGTAGTGGGTATCTTAGTAAATTATGGGAACATCGTCG GGGATGACGAGAGCGCGGGGGGAACCGGGTGAGAGAACAAAGAAGCGCGT GATATGCGCTCAATAACGCCTCTGCTGCTCACACTCGAGAACTATCCTCT CCGTTATCATCACCTAACCCATTTCCCTCTGAAACATGATCGGAACGCCT CGAACGTGCGTGAAGCAAACCCTACTTTGAAAACATTTTGAGTCAATATT TCCCCAGAATACGTCCTTCAGCTCAAACCACCACCTGTGGCATTCGCTAT TAATAGTTCTGATTGTGGATCGCGCCAACACACCTCCTTCCCGCGCGTGC TCTCTCTCTCTCTCTCGATCGATTTGCATGATAACTAGACTGGTCGATGT GCACGACGCGAGCGCTCACTTGCTCCTCGCTTTGCTGCCGACCACGGGAA TGGCGGTGATCGCCCTCTACATCGCGGCGTACATGTGGAAGTATGGGAAC GACGCGTCGATCGTTGTCCAGACCACAATGTGCAACGGGTGGATGTTCCC GTTCCTCGGCACCCTAGCATTGCTTGCCGGACAGGTGCCACCAGAGGTGA GGTGCACGTTTCCCGTAGGCTCAAAGAAGTGCTGTGACGGAGCTATCCTG TTCGAGGGCCCAACGCTACAAGCTTCGTGTTTTTAGTAGGGTTTGGGGGT TTCGATTGTAAGGTGTGTTTACTCCGACCGTTCTGGGGATTTGCTGTCCC ACGCGTTCAGGTCTGAGAGAGTGTATCGAAGGCGGTAACGATGATACTGC GCAACGTTTTTTCAACTCCCAACAGCTTGATTTACCTCCCCCATTTCTCT CCCTTGCGGAGCAGAAGCTTTTGCTCGCGAGGTGATCGTTGGCGTTCCTT AAATAATAGAACCGTGCAATGAGCACATTGTATGTACACTTGCGGGGGGG GGGGTGATTCCTCTCGCATTGCTTTGATTGACGCCGCTTCTCTCGTTCAC GACCGTTATGACATATGTGTCTCCCCTGACGCCCCCCCCCCCTTATCCTT CCTTTCCGCTGACTTGTTTCACGACACTTGGCATTGGTCATATCTTTACG CAAAAGTCATACTTCCGGGTGGCTAACGAGACCGGCCAGGTGTTGCTGCT ACTGTCGCTGATTGCGGTAGGACGTGAGATTGGAAGAGAAGTGCAGGTGA GAGCGAGAGCGCTCTTCCGATTACACCGAAACGCTACTGTAGTTGGAGAT TGCTTTTGCCCCTTGGAGCGTTAATGCCTACTATAGTTGTCATGACGAAT GGACGTTGCTGAATGCCATCATCGATTCGTCCCTTAGCTCTCGTCTGACA TGACCTCCGCCTCCAAAAATGTAGGCGGCCGACGACTTCTCATCTTTTCT AGAGAAAGAGAACGAGCTGGAAACAGGAATCACCGAACATGGGAAACATA CGCCCACGATAGAGTATCCTCTAGGTTCGAATCGAGTGGGGCTGGAAGGG GAGCCGAAAGACCTTGTGGTAGCGTCTATCGGCGTGGAGGAAAAAGTGGA AGGCGTAAGAAAGAACGCCGCCGCGGCAGAAGAACCGCCGATAGGACATG ATTCGCCGGCCATCGGCGAGGAAGACGAGGGGGTCTTGGGCGTGCTTGGC GATCATAATCTCGATGACGTTACGCGGCCGATGGGACGGCACGCGATGCG AGCGGTTGGGGGTAGAGGAGGAGGAGGCCAGCTTCGTCAACGTACCGGCC TCTTCGGTAACAAGAAGGGTGTCTCGTTGCTGGAGGACCGCGAGGAAGAC TTCACCGGATTTTCGGAGAACGAAGAAGAGCGCCACGACGTCGGCAGAGA TACCCGACCACGCAAATCTGGAACCGATCTGATCGTTACGTCGCCGTCGC CCCCGACCGTGGTAGACGCGGCGGCGGAAGAGAACCGCTCGAGCGCGCCA CGTTCCGGCGCTCGGGGCAAGGCCGACTACGTGATTTATTGAGACGCGTA GCGTGGGGGGCGGTGTGTTGCGTGCAAACCGAGTACCAGCACTGATAAAA AAATGAAAC
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Coding sequence (CDS) from alignment at H-elongata_contig48529:422..3480-

>mRNA_H-elongata_contig48529.12011.1 ID=mRNA_H-elongata_contig48529.12011.1|Name=mRNA_H-elongata_contig48529.12011.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1980bp|location=Sequence derived from alignment at H-elongata_contig48529:422..3480- (Himanthalia elongata Himel1 dioecious)
ATGATCTTCGTAGTGGGTATCTTAGTAAATTATGGGAACATCGTCGGGGA
TGACGAGAGCGCGGGGGGAACCGGATGATCTTCGTAGTGGGTATCTTAGT
AAATTATGGGAACATCGTCGGGGATGACGAGAGCGCGGGGGGAACCGGAC
TGGTCGATGTGCACGACGCGAGCGCTCACTTGCTCCTCGCTTTGCTGCCG
ACCACGGGAATGGCGGTGATCGCCCTCTACATCGCGGCGTACATGTGGAA
GTATGGGAACGACGCGTCGATCGTTGTCCAGACCACAATGTGCAACGGGT
GGATGTTCCCGTTCCTCGGCACCCTAGCATTGCTTGCCGGACAGGTGCCA
CCAGAGACTGGTCGATGTGCACGACGCGAGCGCTCACTTGCTCCTCGCTT
TGCTGCCGACCACGGGAATGGCGGTGATCGCCCTCTACATCGCGGCGTAC
ATGTGGAAGTATGGGAACGACGCGTCGATCGTTGTCCAGACCACAATGTG
CAACGGGTGGATGTTCCCGTTCCTCGGCACCCTAGCATTGCTTGCCGGAC
AGGTGCCACCAGAGTCATACTTCCGGGTGGCTAACGAGACCGGCCAGGTG
TTGCTGCTACTGTCGCTGATTGCGGTAGGACGTGAGATTGGAAGAGAAGT
GCAGTCATACTTCCGGGTGGCTAACGAGACCGGCCAGGTGTTGCTGCTAC
TGTCGCTGATTGCGGTAGGACGTGAGATTGGAAGAGAAGTGCAGGCGGCC
GACGACTTCTCATCTTTTCTAGAGAAAGAGAACGAGCTGGAAACAGGAAT
CACCGAACATGGGAAACATACGCCCACGATAGAGTATCCTCTAGGTTCGA
ATCGAGTGGGGCTGGAAGGGGAGCCGAAAGACCTTGTGGTAGCGTCTATC
GGCGTGGAGGAAAAAGTGGAAGGCGTAAGAAAGAACGCCGCCGCGGCAGA
AGAACCGCCGATAGGACATGATTCGCCGGCCATCGGCGAGGAAGACGAGG
GGGTCTTGGGCGTGCTTGGCGATCATAATCTCGATGACGTTACGCGGCCG
ATGGGACGGCACGCGATGCGAGCGGTTGGGGGTAGAGGAGGAGGAGGCCA
GCTTCGTCAACGTACCGGCCTCTTCGGTAACAAGAAGGGTGTCTCGTTGC
TGGAGGACCGCGAGGAAGACTTCACCGGATTTTCGGAGAACGAAGAAGAG
CGCCACGACGTCGGCAGAGATACCCGACCACGCAAATCTGGAACCGATCT
GATCGTTACGTCGCCGTCGCCCCCGACCGTGGTAGACGCGGCGGCGGAAG
AGAACCGCTCGAGCGCGCCACGTTCCGGCGCTCGGGGCAAGGCCGACTAC
GTGATTTATTGAGCGGCCGACGACTTCTCATCTTTTCTAGAGAAAGAGAA
CGAGCTGGAAACAGGAATCACCGAACATGGGAAACATACGCCCACGATAG
AGTATCCTCTAGGTTCGAATCGAGTGGGGCTGGAAGGGGAGCCGAAAGAC
CTTGTGGTAGCGTCTATCGGCGTGGAGGAAAAAGTGGAAGGCGTAAGAAA
GAACGCCGCCGCGGCAGAAGAACCGCCGATAGGACATGATTCGCCGGCCA
TCGGCGAGGAAGACGAGGGGGTCTTGGGCGTGCTTGGCGATCATAATCTC
GATGACGTTACGCGGCCGATGGGACGGCACGCGATGCGAGCGGTTGGGGG
TAGAGGAGGAGGAGGCCAGCTTCGTCAACGTACCGGCCTCTTCGGTAACA
AGAAGGGTGTCTCGTTGCTGGAGGACCGCGAGGAAGACTTCACCGGATTT
TCGGAGAACGAAGAAGAGCGCCACGACGTCGGCAGAGATACCCGACCACG
CAAATCTGGAACCGATCTGATCGTTACGTCGCCGTCGCCCCCGACCGTGG
TAGACGCGGCGGCGGAAGAGAACCGCTCGAGCGCGCCACGTTCCGGCGCT
CGGGGCAAGGCCGACTACGTGATTTATTGA
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