mRNA_H-elongata_contig48529.12011.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Match: D8LLW8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLW8_ECTSI) HSP 1 Score: 317 bits (812), Expect = 3.570e-101 Identity = 158/197 (80.20%), Postives = 173/197 (87.82%), Query Frame = 1
Query: 19 ASVIPLFLVIIFEVAYAVHKRRSVKFCGIVFDQGHRRSVEPCSWFLRNFVRIVAVMIFVVGILVNYGNIVGDDESAGGTGLVDVHDASAHLLLALLPTTGMAVIALYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPESYFRVANETGQVLLLLSLIAVGREIGREVQAADDFSSFLEKENELETG 609
A+VIPLFLV+ FEVAYAVHKRRSV+FCGIVFDQGHRR VEPCSW LRNFV IV+V++FVV ILVNY +GDD AGGTGLV+ DAS HLLLALLPTTGM +ALYIA YMWKYGN ASIVVQ+T+CNGWMF FLGTLALL GQVPPE FRV NETGQVL LLS+IA+GREIGREVQAAD+FS FLEKENELE+G
Sbjct: 80 AAVIPLFLVVTFEVAYAVHKRRSVQFCGIVFDQGHRRGVEPCSWVLRNFVGIVSVLLFVVHILVNYDIGIGDDNKAGGTGLVETQDASLHLLLALLPTTGMTALALYIAVYMWKYGNHASIVVQSTVCNGWMFLFLGTLALLGGQVPPEWCFRVVNETGQVLFLLSVIAIGREIGREVQAADNFSHFLEKENELESG 276
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Match: A0A835YJZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJZ6_9STRA) HSP 1 Score: 220 bits (561), Expect = 3.670e-64 Identity = 105/196 (53.57%), Postives = 140/196 (71.43%), Query Frame = 1
Query: 19 ASVIPLFLVIIFEVAYAVHKRRSVKFCGIVFDQGHRRSVEPCSWFLRNFVRIVAVMIFVVGILVNYGNIVGDDESAGGTGLVDVHDASAHLLLALLPTTGMAVIALYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPESYFRVANETGQVLLLLSLIAVGREIGREVQAADDFSSFLEKENELET 606
A V+PLFLV +FE+AY VHK RSVKFCGIVFDQGHR + EPCSWFLR+ VR+ A+ +F++GILV + +I DD +AG G AS +L L+P T MA ++LY++ +MW+YGN+ASIVV +T CN WM LG+L +LAGQ+PP FR +N GQ +LL +++ V E+ RE A D F+ FL +EN L+T
Sbjct: 83 ALVVPLFLVALFEMAYTVHKTRSVKFCGIVFDQGHRINTEPCSWFLRHAVRMCALGLFILGILVYFHSIGSDDAAAGTGGYTQFGGASVQFILCLVPATAMAAVSLYLSIFMWRYGNNASIVVHSTACNRWMLLLLGSLCMLAGQIPPAPAFRASNALGQTILLATMLVVYHEVEREAAARDHFAEFLAEENRLDT 278
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Match: A0A7R9U8D5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8D5_9STRA) HSP 1 Score: 150 bits (379), Expect = 3.030e-38 Identity = 84/231 (36.36%), Postives = 136/231 (58.87%), Query Frame = 1
Query: 19 ASVIPLFLVIIFEVAYAVHKRRSVKFCGIVFDQGHRRSVEPCSWFLRNFVRIVAVMIFVVGILVNYGNIVGDDESAGGTGLVDVHDA-SAHLLLALLPTTGMAVIALYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPESYFRVANETGQVLLLLSLIAVGREIGREVQAADDFSSFLEKENELETGITEHGKHTPTIEYPLGSNRVGLEGEPKDLVVAS 708
A +IPL LV +FE+AY VHK RSVKFCGI FD+GHR+S S+ +R + +A I + ILVN+ + DDE AG TG + +AH++ A+LP+ +A+ YI+ +W YG++ S+ V T+ N W F+G +A +AGQ+ + ++ V + G+ +LL ++ + I R+++ + F+ +L ++ E ET + T+ P+G R+ E E + L V S
Sbjct: 113 AFIIPLLLVYVFELAYQVHKHRSVKFCGITFDEGHRKSFGLKSFLVRRSTQFIATAIVAMNILVNFDLLSVDDEDAGSTGYAGLERGENAHIIFAILPSIILALYVAYISVALWLYGSNNSMTVYTSFVNPWGIVFVGGIAQVAGQIFNDEHYPVTSNGGETVLLSTIAFLIPHIVRDLEDVESFAKYLAEQEEEET--------SKTLRRPVGLPRIH-ESEQEALTVDS 334
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Match: A0A7S3Y231_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y231_HETAK) HSP 1 Score: 149 bits (375), Expect = 5.570e-38 Identity = 80/195 (41.03%), Postives = 118/195 (60.51%), Query Frame = 1
Query: 4 FLGSPASVIPLFLVIIFEVAYAVHKRRSVKFCGIVFDQGHRRSVEPCSWFLRNFVRIVAVMIFVVGILVNYGNIVGDDESAGGTGLVDVHDASA-HLLLALLPTTGMAVIALYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPESYFRVANETGQVLLLLSLIAVGREIGREVQAADDFSSFLE 585
+L + V+PLFLVI F++AY VHK RSV F I FD+GHR+ VEP SW +RN +R+VA + V LVNY N++G AG +G +D A + L+LLP T +A L IA +W YG ++V+ T+ N W+ FLG + LAG V P + V + G++ LL+ +I + I ++ Q ++ F+ FL+
Sbjct: 77 YLALHSLVVPLFLVISFDIAYMVHKNRSVNFFCISFDEGHRKRVEPHSWVMRNLMRMVAACLVAVNALVNY-NVLGAAADAGRSGYLDWSAADPLEVTLSLLPGTVLAAFNLGIAFRLWLYGTQRALVIHATVWNEWILLFLGAMGQLAGLVAPTELYSVTSNAGEIFLLMCIIFIQYTIKKDFQLSNQFNLFLD 270
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Match: A0A6U6D2G5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6D2G5_9STRA) HSP 1 Score: 147 bits (370), Expect = 1.100e-36 Identity = 81/210 (38.57%), Postives = 131/210 (62.38%), Query Frame = 1
Query: 28 IPLFLVIIFEVAYAVHKRRSVKFCGIVFDQGHRR----SVEPCSWFLRNFVRIVAVMIFVVGILVNYGNIVGD----DESAGGTGLVDV------HDASAHLLLALLPTTGMAVIALYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPESYFRVANETGQVLLLLSLIAVGREIGREVQAADDFSSFLEKENELETGIT 615
+P+ LV+ FE+ Y VHK+R V FCG+ FD+G R + S+ LRN +RI+AV++F +GI+ N+ +++GD DE AG G + D HLLL+LLPT +A+ + Y + +W+YG ++S+VV +++ N W PF GTLAL GQV E +F + + G ++ +++L+ + E+ +++ AAD+FS FL + E+ IT
Sbjct: 94 VPILLVVSFELTYLVHKKRGVNFCGMYFDEGRRVQKIITTPVKSFLLRNLIRILAVILFAMGIVGNF-DLLGDVSTVDELAGRAGWWSLVKDPRPWDQKWHLLLSLLPTAVLALCSFYFSFLLWRYGTESSMVVHSSILNPWFNPFFGTLALAVGQVFSEKWFPLTSNIGLLIFVITLLLLMVEVDKDMVAADNFSVFLTEAAEMGDKIT 302
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Match: A0A7S1YZR4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YZR4_TRICV) HSP 1 Score: 142 bits (359), Expect = 3.890e-35 Identity = 78/201 (38.81%), Postives = 125/201 (62.19%), Query Frame = 1
Query: 19 ASVIPLFLVIIFEVAYAVHKRRSVKFCGIVFDQGHRRS---VEPC-SWFLRNFVRIVAVMIFVVGILVNY---GNIVGDDESAGGTG----LVDVHDAS--AHLLLALLPTTGMAVIALYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPESYFRVANETGQVLLLLSLIAVGREIGREVQAADDFSSFL 582
A+ +PL L++ FE+ Y VHKRRSV FCG+ FD+G R S P S+ LRNF+R++AV + +GI+ N+ G++ D AG G + D S HLLL+LLP+ + + Y + +W+YG ++S+VV +++ N + PF GTLAL GQ+ PE +F + + G ++ ++L+ + E+ +++ AADDF+ FL
Sbjct: 92 ATQVPLLLIVTFELTYLVHKRRSVNFCGMYFDEGRRVSKIITTPMKSFVLRNFIRMLAVFLLAMGIMGNFDLLGDVTQVDSLAGRAGWWALVQDPRGWSKKGHLLLSLLPSAVLVLCCFYFSFLLWRYGTESSMVVHSSILNPYFSPFFGTLALATGQLFPERWFPLTSNVGLLVFCITLLLLMSEVDKDMVAADDFAGFL 292
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Match: K0TIK0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TIK0_THAOC) HSP 1 Score: 130 bits (326), Expect = 1.640e-31 Identity = 67/199 (33.67%), Postives = 116/199 (58.29%), Query Frame = 1
Query: 13 SPASVIPLFLVIIFEVAYAVHKRRSVKFCGIVFDQGHR-RSVEPCSWFLRNFVRIVAVMIFVVGILVNYGNIVG--DDESAGGTGLVDV------HDASAHLLLALLPTTGMAVIALYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPESYFRVANETGQVLLLLSLIAVGREIGREVQAADDFSSFL 582
+P P L+ IFE+ Y KRRSV FCG+ FDQG R R S LRNF+R +A+ + V+G+LVN+ + + G G V D+ L+++LLPT + +++ Y++ +W+YG ++S+VV ++MCN W +PF G LAL Q+ E + + + TG ++ +++++ E+ +++ D+ ++FL
Sbjct: 2 APLPQFPALLMTIFELTYLTMKRRSVNFCGMQFDQGVRVRDTMVMSCLLRNFIRTLALALLVIGLLVNFDILYNGISHDLVGRAGWWSVFEGDGDEDSQIFLIVSLLPTLILILVSFYLSIVLWRYGTESSMVVHSSMCNPWFYPFFGMLALALTQLFDEKLYNIMSNTGYLVYIITVLLAMVEVDKDMVKNDEVANFL 200
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Match: A0A7S4RTW4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RTW4_9STRA) HSP 1 Score: 132 bits (332), Expect = 4.520e-31 Identity = 72/206 (34.95%), Postives = 119/206 (57.77%), Query Frame = 1
Query: 28 IPLFLVIIFEVAYAVHKRRSVKFCGIVFDQGHR--RSVEPC---SWFLRNFVRIVAVMIFVVGILVNYG---NIVGDDESAGGTGLVDVHDA-------------SAHLLLALLPTTGMAVIALYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPESYFRVANETGQVLLLLSLIAVGREIGREVQAADDFSSFL 582
+P+ L FE Y VHKRRSV FCG+ FD+G R R + S+ LRNF+R +AV++ V+G++VN+ N+V D AG G + + + HL L+LLPT + + + Y +A +W+YG ++S+VV ++ N W F GT+ L G+ E ++ +++ TG VL ++S + + E+ ++++AA +F FL
Sbjct: 96 VPILLQSTFETCYLVHKRRSVNFCGMYFDEGRRVNRGIATTPMKSFILRNFIRAIAVLLLVMGLVVNFDLLRNVVEVDRLAGRAGWWPLFERKNNAEGQQLDFSENTHLFLSLLPTAILILCSFYFSALLWRYGTESSMVVHSSCWNPWFSLFFGTIFLFIGECFSEKWYPISSNTGFVLFIISYLHLMTEVDKDMKAASEFVEFL 301
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Match: A0A7S2KLA8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KLA8_9STRA) HSP 1 Score: 125 bits (314), Expect = 1.000e-29 Identity = 61/159 (38.36%), Postives = 99/159 (62.26%), Query Frame = 1
Query: 28 IPLFLVIIFEVAYAVHKRRSVKFCGIVFDQGHR-RSVEPCSWFLRNFVRIVAVMIFVVGILVNYGNIVGD---DESAGGTGLVDVHDASA------HLLLALLPTTGMAVIALYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPESYF 474
+P+ L+++FEV Y +HKRRSV FCG+ FD+G R + + S LRN +R +A ++ V+G++VN+ I + DE AG G + + HLLL+LLP + ++ Y++ MW+YG +S++V +++CN W + F GTLA+ AGQ+ E +
Sbjct: 101 VPILLIVMFEVTYLIHKRRSVNFCGMYFDEGRRLNNTQAMSCMLRNSIRSLATVLLVMGLMVNFDFITSNVPIDELAGRAGWWTLFEEEGTFQQELHLLLSLLPIAVLVAVSFYLSTMMWRYGTSSSMIVHSSICNPWFYCFFGTLAMAAGQLFAEQLY 259
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Match: W7TX25_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TX25_9STRA) HSP 1 Score: 125 bits (315), Expect = 3.910e-29 Identity = 72/205 (35.12%), Postives = 121/205 (59.02%), Query Frame = 1
Query: 19 ASVIPLFLVIIFEVAYAVHKRRSVKFCGIVFDQGHRRSVEPCSWFLRNFVRIVAVMIFVVGILVNYGNIVGD-DESAGGTGLVDVHDAS-AHLLLALLPTTGMAVIALYIAAYMWKYGNDASIVVQTTMCNGWMFPFLGTLALLAGQVPPES-YFRVANETGQVLLLLSLIAVGREIGREVQAADDFSSFLEKENELETGITEHG 624
A + PLFLV FE YAVHK RSVK+ GI FD+G R PCSWFLRN VR++A+ +F +G++VN+ D ++AG +G + + AH ++++P+ +++ L IAA + +YG +++++ + GW + LG+L AGQ P + + + GQV+LL+SL+ R + ++ A + FL ++ ++ + G
Sbjct: 79 AVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCSWFLRNLVRLIALALFFMGLIVNFSVFFPDASDNAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSC--GWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQRLAVGG 281 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48529.12011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig48529.12011.1 >prot_H-elongata_contig48529.12011.1 ID=prot_H-elongata_contig48529.12011.1|Name=mRNA_H-elongata_contig48529.12011.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=330bp MIFVVGILVNYGNIVGDDESAGGTGLVDVHDASAHLLLALLPTTGMAVIAback to top mRNA from alignment at H-elongata_contig48529:422..3480- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig48529.12011.1 ID=mRNA_H-elongata_contig48529.12011.1|Name=mRNA_H-elongata_contig48529.12011.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3059bp|location=Sequence derived from alignment at H-elongata_contig48529:422..3480- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig48529:422..3480- >mRNA_H-elongata_contig48529.12011.1 ID=mRNA_H-elongata_contig48529.12011.1|Name=mRNA_H-elongata_contig48529.12011.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1980bp|location=Sequence derived from alignment at H-elongata_contig48529:422..3480- (Himanthalia elongata Himel1 dioecious)back to top |