mRNA_H-elongata_contig48143.11956.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig48143.11956.1
Unique NamemRNA_H-elongata_contig48143.11956.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig48143.11956.1 vs. uniprot
Match: UPI001F373689 (DDE-type integrase/transposase/recombinase n=4 Tax=Terrabacteria group TaxID=1783272 RepID=UPI001F373689)

HSP 1 Score: 192 bits (488), Expect = 4.370e-51
Identity = 124/346 (35.84%), Postives = 190/346 (54.91%), Query Frame = 1
Query:    1 WRKAEETEMRGMVENCVYKQVARPKDKLVVVTKMLYKRKVGLDDKVEKYKCRLVAQGFWKVEGVHYIEKYSPTPSTASIRMLFATAAAKDGELRHFDAERAFVKADIDEKLYIEIPEEYQKFPGAVE----RLNKAIYGFVQMGRCWNNKFCGDMTAIGFEQGKADLCVFRKGVNGEAKVVGVVQGDNILTHAEDKATMDRFAAELGKKFKLKDMDDARYYMSYHITRNRKRSELKIDQHLNVESMVEKFDV--KKESKIPTTSGVLTLLKADEPRNPEEKEEMRKFPYREATTTM------TQPDIASAVRAVARFCENPGPAHKEAVMKIMQYLLRPKDWGITY 1002
            W++A ++E+  +  N V++ V  P+    +  K +YKRK G+D KVE +K RLVA+G+ + EG+ Y E +SP     SIR+L A A   D E+   D + AF+   +DE +Y+  PE +    G  E    +L K+IYG  Q  R WN KF   + + GF+Q   + CV++KG +G A    V+  D+IL    D   M      L  +F++KD+ +A Y +   + R+RK   L + Q   +E ++ K+++   K+  +P+  GV  L +   P+ PEE E MR+ PY  A  ++      T+PDI  AV  V+R+  NPGP H  AV  I +YL R KD+ +TY
Sbjct:  723 WQQAMKSELDSLYSNQVWELVDAPEGIKPIGCKWIYKRKRGVDGKVETFKARLVAKGYTQKEGIDYEETFSPVAMLKSIRILLAIACHYDYEIWQMDVKTAFLNGSLDECIYMMQPEGF--IAGGQENMVCKLKKSIYGLKQASRAWNIKFNQAVKSFGFDQNIDEPCVYKKG-SGNAVAFLVLYVDDILLIGNDVGMMSSTKVWLSSQFQMKDLGEASYVLGIKLLRDRKNKMLALSQSSYIEKILVKYNMHDSKKGLLPSRHGV-PLSRNQCPKTPEEIESMRRVPYASAVGSLMYAMLCTRPDICFAVGMVSRYQSNPGPMHWTAVKHIFKYLRRTKDYMLTY 1064          
BLAST of mRNA_H-elongata_contig48143.11956.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 9.360e-48
Identity = 116/341 (34.02%), Postives = 182/341 (53.37%), Query Frame = 1
Query:    1 WRKAEETEMRGMVENCVYKQV-ARPKDKLVVVTKMLYKRKVGLDDKVEKYKCRLVAQGFWKVEGVHYIEKYSPTPSTASIRMLFATAAAKDGELRHFDAERAFVKADIDEKLYIEIPEEYQKFPGAVERLNKAIYGFVQMGRCWNNKFCGDMTAIGFEQGKADLCVFRKGVNGEAKVVGVVQGDNILTHAEDKATMDRFAAELGKKFKLKDMDDARYYMSYHITRNRKRSELKIDQHLNVESMVEKFDVKKESKIPTTSGVLTLLKADEPRNPEEKEEMRKFPYREA------TTTMTQPDIASAVRAVARFCENPGPAHKEAVMKIMQYLLRPKDWGITY 1002
            W +A   E  G +    +  V   P+ +  V +K  +  K   + K++ +K RLVA+GF ++  V Y    SP PS+ASI+++ A A  K   L H+D ++A+  A +DE++++++P         + +  +AIYG  Q GR W       +   GFEQ KAD CVFRK V+    ++ V+  D+IL    D+   +   A L KKF  K++ + +++    I R+ +   L+I Q   ++SMVE+FDVK  S+IP T G     K ++       EE  ++P REA       +T ++PD++ AVRAVAR    P   H +A+ KI+ YL   +D GITY
Sbjct:  752 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY 1084          
BLAST of mRNA_H-elongata_contig48143.11956.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 9.950e-48
Identity = 116/341 (34.02%), Postives = 182/341 (53.37%), Query Frame = 1
Query:    1 WRKAEETEMRGMVENCVYKQV-ARPKDKLVVVTKMLYKRKVGLDDKVEKYKCRLVAQGFWKVEGVHYIEKYSPTPSTASIRMLFATAAAKDGELRHFDAERAFVKADIDEKLYIEIPEEYQKFPGAVERLNKAIYGFVQMGRCWNNKFCGDMTAIGFEQGKADLCVFRKGVNGEAKVVGVVQGDNILTHAEDKATMDRFAAELGKKFKLKDMDDARYYMSYHITRNRKRSELKIDQHLNVESMVEKFDVKKESKIPTTSGVLTLLKADEPRNPEEKEEMRKFPYREA------TTTMTQPDIASAVRAVARFCENPGPAHKEAVMKIMQYLLRPKDWGITY 1002
            W +A   E  G +    +  V   P+ +  V +K  +  K   + K++ +K RLVA+GF ++  V Y    SP PS+ASI+++ A A  K   L H+D ++A+  A +DE++++++P         + +  +AIYG  Q GR W       +   GFEQ KAD CVFRK V+    ++ V+  D+IL    D+   +   A L KKF  K++ + +++    I R+ +   L+I Q   ++SMVE+FDVK  S+IP T G     K ++       EE  ++P REA       +T ++PD++ AVRAVAR    P   H +A+ KI+ YL   +D GITY
Sbjct: 1131 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY 1463          
BLAST of mRNA_H-elongata_contig48143.11956.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 1.000e-47
Identity = 116/341 (34.02%), Postives = 182/341 (53.37%), Query Frame = 1
Query:    1 WRKAEETEMRGMVENCVYKQV-ARPKDKLVVVTKMLYKRKVGLDDKVEKYKCRLVAQGFWKVEGVHYIEKYSPTPSTASIRMLFATAAAKDGELRHFDAERAFVKADIDEKLYIEIPEEYQKFPGAVERLNKAIYGFVQMGRCWNNKFCGDMTAIGFEQGKADLCVFRKGVNGEAKVVGVVQGDNILTHAEDKATMDRFAAELGKKFKLKDMDDARYYMSYHITRNRKRSELKIDQHLNVESMVEKFDVKKESKIPTTSGVLTLLKADEPRNPEEKEEMRKFPYREA------TTTMTQPDIASAVRAVARFCENPGPAHKEAVMKIMQYLLRPKDWGITY 1002
            W +A   E  G +    +  V   P+ +  V +K  +  K   + K++ +K RLVA+GF ++  V Y    SP PS+ASI+++ A A  K   L H+D ++A+  A +DE++++++P         + +  +AIYG  Q GR W       +   GFEQ KAD CVFRK V+    ++ V+  D+IL    D+   +   A L KKF  K++ + +++    I R+ +   L+I Q   ++SMVE+FDVK  S+IP T G     K ++       EE  ++P REA       +T ++PD++ AVRAVAR    P   H +A+ KI+ YL   +D GITY
Sbjct: 1151 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY 1483          
BLAST of mRNA_H-elongata_contig48143.11956.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 1.010e-47
Identity = 116/341 (34.02%), Postives = 182/341 (53.37%), Query Frame = 1
Query:    1 WRKAEETEMRGMVENCVYKQV-ARPKDKLVVVTKMLYKRKVGLDDKVEKYKCRLVAQGFWKVEGVHYIEKYSPTPSTASIRMLFATAAAKDGELRHFDAERAFVKADIDEKLYIEIPEEYQKFPGAVERLNKAIYGFVQMGRCWNNKFCGDMTAIGFEQGKADLCVFRKGVNGEAKVVGVVQGDNILTHAEDKATMDRFAAELGKKFKLKDMDDARYYMSYHITRNRKRSELKIDQHLNVESMVEKFDVKKESKIPTTSGVLTLLKADEPRNPEEKEEMRKFPYREA------TTTMTQPDIASAVRAVARFCENPGPAHKEAVMKIMQYLLRPKDWGITY 1002
            W +A   E  G +    +  V   P+ +  V +K  +  K   + K++ +K RLVA+GF ++  V Y    SP PS+ASI+++ A A  K   L H+D ++A+  A +DE++++++P         + +  +AIYG  Q GR W       +   GFEQ KAD CVFRK V+    ++ V+  D+IL    D+   +   A L KKF  K++ + +++    I R+ +   L+I Q   ++SMVE+FDVK  S+IP T G     K ++       EE  ++P REA       +T ++PD++ AVRAVAR    P   H +A+ KI+ YL   +D GITY
Sbjct: 1294 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY 1626          
BLAST of mRNA_H-elongata_contig48143.11956.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 1.150e-47
Identity = 114/341 (33.43%), Postives = 183/341 (53.67%), Query Frame = 1
Query:    1 WRKAEETEMRGMVENCVYKQV-ARPKDKLVVVTKMLYKRKVGLDDKVEKYKCRLVAQGFWKVEGVHYIEKYSPTPSTASIRMLFATAAAKDGELRHFDAERAFVKADIDEKLYIEIPEEYQKFPGAVERLNKAIYGFVQMGRCWNNKFCGDMTAIGFEQGKADLCVFRKGVNGEAKVVGVVQGDNILTHAEDKATMDRFAAELGKKFKLKDMDDARYYMSYHITRNRKRSELKIDQHLNVESMVEKFDVKKESKIPTTSGVLTLLKADEPRNPEEKEEMRKFPYREA------TTTMTQPDIASAVRAVARFCENPGPAHKEAVMKIMQYLLRPKDWGITY 1002
            W +A   E  G +    +  V   P+ +  V +K  +  K   + K++ +K RLVA+GF ++  V Y    SP PS+ASI+++ A A  K   L H+D ++A+  A +DE++++++P         + +  +AIYG  Q GR W       +   GFEQ KAD CVFRK V+    ++ V+  D+IL    D+   +   A L KKF  K++++ +++    I R+ +   L+I Q   ++SMV++FDV+  S+IP + GV    K D+ +  E       +P REA       +T ++PD++ AVRAVAR    P   H +A+ KI+ YL   +D GITY
Sbjct:  306 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGE-------WPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY 638          
BLAST of mRNA_H-elongata_contig48143.11956.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 182 bits (462), Expect = 1.330e-47
Identity = 111/337 (32.94%), Postives = 191/337 (56.68%), Query Frame = 1
Query:    1 WRKAEETEMRGMVENCVYKQVARPKDKLVVVTKMLYKRKVGLDDKVEKYKCRLVAQGFWKVEGVHYIEKYSPTPSTASIRMLFATAAAKDGELRHFDAERAFVKADIDEKLYIEIPEEYQKFPGAVERLNKAIYGFVQMGRCWNNKFCGDMTAIGFEQGKADLCVFRKGVNGEAKVVGVVQGDN-ILTHAEDKATMDRFAAELGKKFKLKDMDDARYYMSYHITRNRKRSELKIDQHLNVESMVEKFDVKKESKIPTTSGVLTLLKADEPRNPEE--KEEMRKFPYREATTTMTQPDIASAVRAVARFCENPGPAHKEAVMKIMQYLLRPKDWGITY 1002
            WRKA E E+    +  V+++V RP+D+ ++ +K ++K K G D +VEKYK RLVAQGF +VEG+ Y E ++P   + SIR+L A AA  D E+   D + AF+  +++E++Y+++P  ++    AV RL KA+YG  Q  R W  K   ++  +GF + +AD CVF K ++    ++ V   DN +L+ + D  T  +  ++LG +F + D+ +  + ++  +TRNR+   +++ Q   +E ++E+  +  E K P  + + + LK ++   PE   KE  R           T+ DIA+AV  ++R  + PG  H  AV ++ +YL    +  + Y
Sbjct: 1010 WRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMDRHPPIIAVYVDDNMVLSDSLDLVTKTK--SDLGSRFDMTDLGEVCWILNMEVTRNRQERTIRLSQSQYIEDILERHGMA-ECK-PVHTPMDSKLKLEKLHAPEVNVKEYQRLIGSLMYAAIATRFDIATAVGMLSRHSQAPGKEHHIAVKRVFRYLRGASESDVLY 1342          
BLAST of mRNA_H-elongata_contig48143.11956.1 vs. uniprot
Match: A0A5A7QRB1_STRAF (Gag-pol polyprotein n=2 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7QRB1_STRAF)

HSP 1 Score: 180 bits (457), Expect = 5.930e-47
Identity = 117/344 (34.01%), Postives = 188/344 (54.65%), Query Frame = 1
Query:    1 WRKAEETEMRGMVENCVYKQVARPKDKLVVVTKMLYKRKVGLDDKVEKYKCRLVAQGFWKVEGVHYIEKYSPTPSTASIRMLFATAAAKDGELRHFDAERAFVKADIDEKLYIEIPEEY--QKFPGAVERLNKAIYGFVQMGRCWNNKFCGDMTAIGFEQGKADLCVFRKGVNGEAKVVGVVQGDNILTHAEDKATMDRFAAELGKKFKLKDMDDARYYMSYHITRNRKRSELKIDQHLNVESMVEKFDVK--KESKIPTTSGVLTLLKADEPRNPEEKEEMRKFPYREATTTM------TQPDIASAVRAVARFCENPGPAHKEAVMKIMQYLLRPKDWGITY 1002
            W  A + EM  M  N V+  V  P     +  K +YKRK GLD KV+ +K RLVA+G+ ++EG+ Y E +SP     SIR+L A AA  D E+   D + AF+  ++ E +Y++ PE +  +     V +LN++IYG  Q  R WN +F   + + GF Q   + CV++K ++G   V  V+  D+IL     K  +      L K+F +KD+ +A + +   + R+RK+  L + Q   +++++ +F ++  K+  +P   G+  L K   P+  +E EEM+  PY  A  ++      T+PDI+ AV  VAR+  NPG  H  AV  I++YL R K++ + Y
Sbjct:  807 WNVAMKAEMGSMDSNQVWDLVELPDGVRPIGCKWIYKRKRGLDGKVQTFKARLVAKGYTQIEGIDYDETFSPVAMLKSIRILLAVAAHMDYEVWQMDVKTAFLNGNLQEDIYMQQPEGFIAEGREHLVCKLNRSIYGLKQASRSWNIRFDEVIQSYGFTQCPDEHCVYKK-ISGSVVVFLVLYVDDILLIGNSKKELSDVKVWLSKQFDMKDLGEAGHILGIRLIRDRKKRMLCLSQSSYIDTVLARFSMQDSKKGMLPFRHGI-PLSKEMSPKTSKEIEEMKTVPYASAVGSLMYAMLCTRPDISYAVGMVARYQSNPGREHWSAVKHILKYLRRTKEYMLVY 1148          
BLAST of mRNA_H-elongata_contig48143.11956.1 vs. uniprot
Match: UPI001378C744 (hypothetical protein n=1 Tax=Weizmannia coagulans TaxID=1398 RepID=UPI001378C744)

HSP 1 Score: 169 bits (429), Expect = 4.060e-46
Identity = 115/343 (33.53%), Postives = 183/343 (53.35%), Query Frame = 1
Query:   10 AEETEMRGMVENCVYKQVARPKDKLVVVTKMLYKRKVGLDDKVEKYKCRLVAQGFWKVEGVHYIEKYSPTPSTASIRMLFATAAAKDGELRHFDAERAFVKADIDEKLYIEIPEEY--QKFPGAVERLNKAIYGFVQMGRCWNNKFCGDMTAIGFEQGKADLCVFRKGVNGEAKVVG--VVQGDNILTHAEDKATMDRFAAELGKKFKLKDMDDARYYMSYHITRNRKRSELKIDQHLNVESMVEKFDVKKESK--IPTTSGVLTLLKADEPRNPEEKEEMRKFPYREATTTM------TQPDIASAVRAVARFCENPGPAHKEAVMKIMQYLLRPKDWGITY 1002
            A ++E+  M  N V+  V  P     V  K +YKRK G+D KVE +K RLVA+G+ + EG+ Y E +SP     SIR+L + AA  D E+   D + AF+  +++E++Y+  PE +  +     V +L ++IYG  Q  R WN +F   + + GFEQ   + CV+++      KVV   V+  D+IL    D   M      L  +F +KD+ +A + +   + R+RK   L + Q   ++ ++E F ++   K  +P   GV  L     P+  EE+  MR+ PY  A  ++      T+PDI  +V  V+R+  NPGP H +AV  I++YL R +D+ + Y
Sbjct:    1 AMKSELDSMYSNHVWDLVKAPNGIKPVDCKWVYKRKRGIDGKVETFKARLVAKGYTQKEGIDYDETFSPVAMLKSIRILLSIAAHYDYEIWQMDVKTAFLNGNLEEEIYMMQPEGFIAKNQEHMVCKLKRSIYGLKQASRSWNIRFDQAIKSFGFEQNLDEPCVYKR---HRDKVVMFLVLYVDDILLIGNDVGVMSSVKVWLSSQFDMKDLGEANFILGIKLWRDRKNKMLGLSQTGYIDKVLEWFSMQNSKKGLLPFRHGV-PLSDDQRPKTQEEENMMRQVPYASAVGSLMYAMLCTRPDICYSVGMVSRYQSNPGPKHWQAVKHILKYLRRTRDYMLVY 339          
BLAST of mRNA_H-elongata_contig48143.11956.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 7.680e-46
Identity = 116/341 (34.02%), Postives = 174/341 (51.03%), Query Frame = 1
Query:    1 WRKAEETEMRGMVENCVYKQV-ARPKDKLVVVTKMLYKRKVGLDDKVEKYKCRLVAQGFWKVEGVHYIEKYSPTPSTASIRMLFATAAAKDGELRHFDAERAFVKADIDEKLYIEIPEEYQKFPGAVERLNKAIYGFVQMGRCWNNKFCGDMTAIGFEQGKADLCVFRKGVNGEAKVVGVVQGDNILTHAEDKATMDRFAAELGKKFKLKDMDDARYYMSYHITRNRKRSELKIDQHLNVESMVEKFDVKKESKIPTTSGVLTLLKADEPRNPEEKEEMRKFPYREA------TTTMTQPDIASAVRAVARFCENPGPAHKEAVMKIMQYLLRPKDWGITY 1002
            W +A   E  G +    +  V   P+ +  V +K  +  K   D K+EK+K RLVA+GF ++  V Y    SP PS+ASI+++ A A  K  +L H+D ++AF  A +DE +++ +P    +    V +  +AIYG  Q GR W       +   GFEQ KAD CVFRK  +           D IL    D    +  A+ L K F  KD+ +  ++    + R+ +   L+I Q   ++S+V +FDV+  S IP + GV    K D+       E   ++P REA       +T ++PDI+ AVRAVAR    P   H +A++KI+ YL   +D GITY
Sbjct:   15 WEQAMREEFDGHLGTGTFSFVDGTPEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLAS-LNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDD-------ESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITY 347          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig48143.11956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F3736894.370e-5135.84DDE-type integrase/transposase/recombinase n=4 Tax... [more]
A0A6H5KSG8_9PHAE9.360e-4834.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE9.950e-4834.02Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.000e-4734.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.010e-4734.02Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JC10_9PHAE1.150e-4733.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0C2WN23_AMAMK1.330e-4732.94Integrase catalytic domain-containing protein (Fra... [more]
A0A5A7QRB1_STRAF5.930e-4734.01Gag-pol polyprotein n=2 Tax=Striga asiatica TaxID=... [more]
UPI001378C7444.060e-4633.53hypothetical protein n=1 Tax=Weizmannia coagulans ... [more]
A0A6H5JCG0_9PHAE7.680e-4634.02Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig48143contigH-elongata_contig48143:3104..4132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score170.6
Seed ortholog evalue1.2e-39
Seed eggNOG ortholog65672.G4TWW2
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1011
Cds size987
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig48143.11956.1prot_H-elongata_contig48143.11956.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig48143 3128..4132 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930793.9089973-UTR-H-elongata_contig48143:3103..31271622930793.9089973-UTR-H-elongata_contig48143:3103..3127Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48143 3104..3127 +
1691679573.0597422-UTR-H-elongata_contig48143:3103..31271691679573.0597422-UTR-H-elongata_contig48143:3103..3127Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig48143 3104..3127 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930793.9242752-CDS-H-elongata_contig48143:3127..39611622930793.9242752-CDS-H-elongata_contig48143:3127..3961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48143 3128..3961 +
1691679573.0694335-CDS-H-elongata_contig48143:3127..39611691679573.0694335-CDS-H-elongata_contig48143:3127..3961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48143 3128..3961 +
1622930793.942674-CDS-H-elongata_contig48143:3979..41321622930793.942674-CDS-H-elongata_contig48143:3979..4132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48143 3980..4132 +
1691679573.079351-CDS-H-elongata_contig48143:3979..41321691679573.079351-CDS-H-elongata_contig48143:3979..4132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig48143 3980..4132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig48143.11956.1

>prot_H-elongata_contig48143.11956.1 ID=prot_H-elongata_contig48143.11956.1|Name=mRNA_H-elongata_contig48143.11956.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=329bp
MRGMVENCVYKQVARPKDKLVVVTKMLYKRKVGLDDKVEKYKCRLVAQGF
WKVEGVHYIEKYSPTPSTASIRMLFATAAAKDGELRHFDAERAFVKADID
EKLYIEIPEEYQKFPGAVERLNKAIYGFVQMGRCWNNKFCGDMTAIGFEQ
GKADLCVFRKGVNGEAKVVGVVQGDNILTHAEDKATMDRFAAELGKKFKL
KDMDDARYYMSYHITRNRKRSELKIDQHLNVESMVEKFDVKKESKIPTTS
GVLTLLKADEPRNPEEKEEMRKFPYREATTTMTQPDIASAVRAVARFCEN
PGPAHKEAVMKIMQYLLRPKDWGITYVDR
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mRNA from alignment at H-elongata_contig48143:3104..4132+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig48143.11956.1 ID=mRNA_H-elongata_contig48143.11956.1|Name=mRNA_H-elongata_contig48143.11956.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1029bp|location=Sequence derived from alignment at H-elongata_contig48143:3104..4132+ (Himanthalia elongata Himel1 dioecious)
TGGCGGAAAGCAGAAGAAACAGAGATGCGTGGTATGGTCGAGAACTGCGT TTATAAGCAGGTGGCTCGGCCGAAGGATAAGCTCGTGGTTGTCACAAAAA TGCTCTACAAGCGAAAGGTCGGACTGGACGACAAGGTCGAGAAATACAAG TGTCGGCTTGTAGCTCAAGGGTTCTGGAAGGTGGAAGGTGTGCACTATAT TGAAAAATACTCGCCCACGCCATCGACCGCGTCAATCCGGATGCTTTTTG CCACAGCAGCGGCCAAGGACGGTGAGCTGCGCCATTTCGACGCGGAGCGG GCATTCGTGAAAGCGGATATCGATGAGAAGTTATATATAGAGATCCCCGA GGAGTACCAGAAGTTTCCGGGGGCAGTGGAACGGCTGAACAAGGCTATTT ACGGATTCGTGCAGATGGGGAGGTGCTGGAACAACAAGTTCTGTGGCGAT ATGACGGCGATTGGATTCGAGCAGGGAAAAGCGGATCTATGCGTGTTCCG TAAGGGCGTTAACGGTGAGGCGAAAGTGGTGGGGGTCGTACAAGGGGACA ATATTCTTACTCACGCCGAAGACAAAGCGACGATGGATAGATTCGCGGCT GAGCTTGGGAAAAAGTTCAAATTGAAGGACATGGATGACGCCAGGTACTA CATGAGCTATCACATTACTAGGAACCGCAAGAGAAGCGAGCTGAAGATCG ACCAACACTTGAACGTGGAGTCGATGGTGGAAAAATTTGACGTCAAGAAG GAAAGCAAGATACCGACTACGTCGGGGGTGCTAACACTCTTAAAGGCGGA TGAGCCGCGCAATCCGGAGGAGAAGGAGGAAATGAGGAAGTTCCCATACC GGGAAGCAGTGGGGGCGCTTATGTAGACAACGACGATGACACAGCCGGAC ATTGCGAGCGCAGTACGCGCTGTGGCCAGGTTCTGCGAAAACCCTGGGCC GGCGCATAAAGAGGCAGTGATGAAGATTATGCAGTATCTCCTTCGCCCGA AGGATTGGGGAATTACATACGTGGACAGG
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Coding sequence (CDS) from alignment at H-elongata_contig48143:3104..4132+

>mRNA_H-elongata_contig48143.11956.1 ID=mRNA_H-elongata_contig48143.11956.1|Name=mRNA_H-elongata_contig48143.11956.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1974bp|location=Sequence derived from alignment at H-elongata_contig48143:3104..4132+ (Himanthalia elongata Himel1 dioecious)
ATGCGTGGTATGGTCGAGAACTGCGTTTATAAGCAGGTGGCTCGGCCGAA
GGATAAGCTCGTGGTTGTCACAAAAATGCTCTACAAGCGAAAGGTCGGAC
TGGACGACAAGGTCGAGAAATACAAGTGTCGGCTTGTAGCTCAAGGGTTC
TGGAAGGTGGAAGGTGTGCACTATATTGAAAAATACTCGCCCACGCCATC
GACCGCGTCAATCCGGATGCTTTTTGCCACAGCAGCGGCCAAGGACGGTG
AGCTGCGCCATTTCGACGCGGAGCGGGCATTCGTGAAAGCGGATATCGAT
GAGAAGTTATATATAGAGATCCCCGAGGAGTACCAGAAGTTTCCGGGGGC
AGTGGAACGGCTGAACAAGGCTATTTACGGATTCGTGCAGATGGGGAGGT
GCTGGAACAACAAGTTCTGTGGCGATATGACGGCGATTGGATTCGAGCAG
GGAAAAGCGGATCTATGCGTGTTCCGTAAGGGCGTTAACGGTGAGGCGAA
AGTGGTGGGGGTCGTACAAGGGGACAATATTCTTACTCACGCCGAAGACA
AAGCGACGATGGATAGATTCGCGGCTGAGCTTGGGAAAAAGTTCAAATTG
AAGGACATGGATGACGCCAGGTACTACATGAGCTATCACATTACTAGGAA
CCGCAAGAGAAGCGAGCTGAAGATCGACCAACACTTGAACGTGGAGTCGA
TGGTGGAAAAATTTGACGTCAAGAAGGAAAGCAAGATACCGACTACGTCG
GGGGTGCTAACACTCTTAAAGGCGGATGAGCCGCGCAATCCGGAGGAGAA
GGAGGAAATGAGGAAGTTCCCATACCGGGAAGCAATGCGTGGTATGGTCG
AGAACTGCGTTTATAAGCAGGTGGCTCGGCCGAAGGATAAGCTCGTGGTT
GTCACAAAAATGCTCTACAAGCGAAAGGTCGGACTGGACGACAAGGTCGA
GAAATACAAGTGTCGGCTTGTAGCTCAAGGGTTCTGGAAGGTGGAAGGTG
TGCACTATATTGAAAAATACTCGCCCACGCCATCGACCGCGTCAATCCGG
ATGCTTTTTGCCACAGCAGCGGCCAAGGACGGTGAGCTGCGCCATTTCGA
CGCGGAGCGGGCATTCGTGAAAGCGGATATCGATGAGAAGTTATATATAG
AGATCCCCGAGGAGTACCAGAAGTTTCCGGGGGCAGTGGAACGGCTGAAC
AAGGCTATTTACGGATTCGTGCAGATGGGGAGGTGCTGGAACAACAAGTT
CTGTGGCGATATGACGGCGATTGGATTCGAGCAGGGAAAAGCGGATCTAT
GCGTGTTCCGTAAGGGCGTTAACGGTGAGGCGAAAGTGGTGGGGGTCGTA
CAAGGGGACAATATTCTTACTCACGCCGAAGACAAAGCGACGATGGATAG
ATTCGCGGCTGAGCTTGGGAAAAAGTTCAAATTGAAGGACATGGATGACG
CCAGGTACTACATGAGCTATCACATTACTAGGAACCGCAAGAGAAGCGAG
CTGAAGATCGACCAACACTTGAACGTGGAGTCGATGGTGGAAAAATTTGA
CGTCAAGAAGGAAAGCAAGATACCGACTACGTCGGGGGTGCTAACACTCT
TAAAGGCGGATGAGCCGCGCAATCCGGAGGAGAAGGAGGAAATGAGGAAG
TTCCCATACCGGGAAGCAACAACGACGATGACACAGCCGGACATTGCGAG
CGCAGTACGCGCTGTGGCCAGGTTCTGCGAAAACCCTGGGCCGGCGCATA
AAGAGGCAGTGATGAAGATTATGCAGTATCTCCTTCGCCCGAAGGATTGG
GGAATTACATACGTGGACAGGACAACGACGATGACACAGCCGGACATTGC
GAGCGCAGTACGCGCTGTGGCCAGGTTCTGCGAAAACCCTGGGCCGGCGC
ATAAAGAGGCAGTGATGAAGATTATGCAGTATCTCCTTCGCCCGAAGGAT
TGGGGAATTACATACGTGGACAGG
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