prot_H-elongata_contig46945.11792.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig46945.11792.1
Unique Nameprot_H-elongata_contig46945.11792.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length333
Homology
BLAST of mRNA_H-elongata_contig46945.11792.1 vs. uniprot
Match: D7G2G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G5_ECTSI)

HSP 1 Score: 267 bits (682), Expect = 4.110e-82
Identity = 190/363 (52.34%), Postives = 228/363 (62.81%), Query Frame = 0
Query:    6 RPADQT-VESPPDLTAFETVRQGLAETNTVGWQLAPMSIELAAKWYKLPESQRFLVDFLHQVTGIMLDQLRIKRSQQLMSNGAFETTATLLEKQAVRLDRQARVRKEAKVKAEETARRAHIAQAEARQAT----SAAAGGNLVENGIGMGDEDNADGLTLAAVSAAAIKAMEAAGFAXXXXXXXXXXXXXXXXKGERWMGADSLSVLLGGLVDHR--TDPQ--------------------------NRSEVMRVVKRACAAIMRQVSVLSEEELKKENQESLGILVRHLKYLM----AP----MGEQQMREVFRFHAELVLRHIRASSLPMRLWGWEQTEELIALSYKHRWNAKAYLVRRTA 327
            RPA Q  VE P DLT F++VRQGLA+ NTVGW LAP SIELA K Y  P +  FL DFLHQVTGIMLDQ R K    +M NG F   A LLE+QA RLD QAR R+  K  A ETARRA +AQAEARQA     S A GG     G G  D++        AV A A+ A  AA    XXXXXXX        KGE+W+GA+SLSV+L  L++ +  TD                            + S  +RV +RAC AIM+QV VLSEEELKKE+QE+LG LVR+++++M    +P     GE++MRE  RFH+ELVLRH+RASSLPMRLWGWEQTE+LI  S++HRWNAK YL   T+
Sbjct:   16 RPAVQRRVEPPVDLTPFDSVRQGLADNNTVGWSLAPTSIELATKIYPHPRAIGFLSDFLHQVTGIMLDQQRAKVCTIMMDNGTFGAAADLLEQQAARLDSQARRREGVKAAAAETARRAQLAQAEARQAAQNAPSPAEGG-----GGGPADKE--------AVVARAVGAARAAXX--XXXXXXXEARALAAAKGEQWLGAESLSVVLAALLECKLGTDAPVGGGGLPAVAQPGGGXXXXXXXXXSGSISPALRVAQRACRAIMKQVRVLSEEELKKESQEALGHLVRNIRHVMMFQTSPGVPYAGEKEMRENVRFHSELVLRHLRASSLPMRLWGWEQTEDLINHSHRHRWNAKVYLADPTS 363          
BLAST of mRNA_H-elongata_contig46945.11792.1 vs. uniprot
Match: A0A6H5KKZ1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKZ1_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 7.880e-43
Identity = 126/278 (45.32%), Postives = 160/278 (57.55%), Query Frame = 0
Query:   75 RIKRSQQLMSNGAFETTATLLEKQAVRLDRQARVRKEAKVKAEETARRAHIAQAEARQA----TSAAAGGNLVENGIGMGDED----NADGLTLAAVSAAAIKAMEAAGFAXXXXXXXXXXXXXXXXKGERWMGADSLSVLLGGLVDHRTDPQN-------------RSEVMRVVKRACAAIMRQVSVLSEEELKKENQESLGILVRHLKYLM----AP----MGEQQMREVFRFHAELVLRHIRASSLPMRLWGWEQTEELIALSYKHRWNAKAYLV 323
            R K    +M NG F   A LLE+QA RL+ QAR R+  K  A ETARRA +AQAEARQA    +S A GG     G G  D++     A  +  AAV AA + A EA   A                KGE+W+GA+SLSV+L  L++ +    +                             R+  VLSEEELKKE+QE+LG LVR+++++M    +P     GEQ+MRE  RFH+ELVLRH+RASSLPMRLWGWEQTE+LI  S++HRW+AKAYLV
Sbjct:   63 RTKVCMIMMDNGTFGAAADLLEQQAARLESQARRREGVKATAAETARRAQLAQAEARQAAQNASSPAEGG-----GGGPADKEAVVARAVWVARAAVEAAEVAAAEARALAAA--------------KGEQWLGAESLSVVLAALLECKLGKDSPVGGGXXXXXXXXXXXXXXXXXXXXXXAGRRRRVLSEEELKKESQEALGHLVRNIRHVMMFQTSPGVPYAGEQEMRENVRFHSELVLRHLRASSLPMRLWGWEQTEDLINHSHRHRWHAKAYLV 321          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46945.11792.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2G5_ECTSI4.110e-8252.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKZ1_9PHAE7.880e-4345.32Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 109..129

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46945contigH-elongata_contig46945:161..3182 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46945.11792.1mRNA_H-elongata_contig46945.11792.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig46945 161..3182 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig46945.11792.1 ID=prot_H-elongata_contig46945.11792.1|Name=mRNA_H-elongata_contig46945.11792.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=333bp
MESELRPADQTVESPPDLTAFETVRQGLAETNTVGWQLAPMSIELAAKWY
KLPESQRFLVDFLHQVTGIMLDQLRIKRSQQLMSNGAFETTATLLEKQAV
RLDRQARVRKEAKVKAEETARRAHIAQAEARQATSAAAGGNLVENGIGMG
DEDNADGLTLAAVSAAAIKAMEAAGFATEVSEAAAAAAASAASKGERWMG
ADSLSVLLGGLVDHRTDPQNRSEVMRVVKRACAAIMRQVSVLSEEELKKE
NQESLGILVRHLKYLMAPMGEQQMREVFRFHAELVLRHIRASSLPMRLWG
WEQTEELIALSYKHRWNAKAYLVRRTAAHYPH*
back to top