mRNA_H-elongata_contig46945.11792.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46945.11792.1
Unique NamemRNA_H-elongata_contig46945.11792.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig46945.11792.1 vs. uniprot
Match: D7G2G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G5_ECTSI)

HSP 1 Score: 267 bits (682), Expect = 4.110e-82
Identity = 190/363 (52.34%), Postives = 228/363 (62.81%), Query Frame = 1 
Query:   16 RPADQT-VESPPDLTAFETVRQGLAETNTVGWQLAPMSIELAAKWYKLPESQRFLVDFLHQVTGIMLDQLRIKRSQQLMSNGAFETTATLLEKQAVRLDRQARVRKEAKVKAEETARRAHIAQAEARQAT----SAAAGGNLVENGIGMGDEDNADGLTLAAVSAAAIKAMEAAGFAXXXXXXXXXXXXXXXXKGERWMGADSLSVLLGGLVDHR--TDPQ--------------------------NRSEVMRVVKRACAAIMRQVSVLSEEELKKENQESLGILVRHLKYLM----AP----MGEQQMREVFRFHAELVLRHIRASSLPMRLWGWEQTEELIALSYKHRWNAKAYLVRRTA 981
            RPA Q  VE P DLT F++VRQGLA+ NTVGW LAP SIELA K Y  P +  FL DFLHQVTGIMLDQ R K    +M NG F   A LLE+QA RLD QAR R+  K  A ETARRA +AQAEARQA     S A GG     G G  D++        AV A A+ A  AA    XXXXXXX        KGE+W+GA+SLSV+L  L++ +  TD                            + S  +RV +RAC AIM+QV VLSEEELKKE+QE+LG LVR+++++M    +P     GE++MRE  RFH+ELVLRH+RASSLPMRLWGWEQTE+LI  S++HRWNAK YL   T+
Sbjct:   16 RPAVQRRVEPPVDLTPFDSVRQGLADNNTVGWSLAPTSIELATKIYPHPRAIGFLSDFLHQVTGIMLDQQRAKVCTIMMDNGTFGAAADLLEQQAARLDSQARRREGVKAAAAETARRAQLAQAEARQAAQNAPSPAEGG-----GGGPADKE--------AVVARAVGAARAAXX--XXXXXXXEARALAAAKGEQWLGAESLSVVLAALLECKLGTDAPVGGGGLPAVAQPGGGXXXXXXXXXSGSISPALRVAQRACRAIMKQVRVLSEEELKKESQEALGHLVRNIRHVMMFQTSPGVPYAGEKEMRENVRFHSELVLRHLRASSLPMRLWGWEQTEDLINHSHRHRWNAKVYLADPTS 363
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BLAST of mRNA_H-elongata_contig46945.11792.1 vs. uniprot
Match: A0A6H5KKZ1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKZ1_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 7.880e-43
Identity = 126/278 (45.32%), Postives = 160/278 (57.55%), Query Frame = 1 
Query:  223 RIKRSQQLMSNGAFETTATLLEKQAVRLDRQARVRKEAKVKAEETARRAHIAQAEARQA----TSAAAGGNLVENGIGMGDED----NADGLTLAAVSAAAIKAMEAAGFAXXXXXXXXXXXXXXXXKGERWMGADSLSVLLGGLVDHRTDPQN-------------RSEVMRVVKRACAAIMRQVSVLSEEELKKENQESLGILVRHLKYLM----AP----MGEQQMREVFRFHAELVLRHIRASSLPMRLWGWEQTEELIALSYKHRWNAKAYLV 969
            R K    +M NG F   A LLE+QA RL+ QAR R+  K  A ETARRA +AQAEARQA    +S A GG     G G  D++     A  +  AAV AA + A EA   A                KGE+W+GA+SLSV+L  L++ +    +                             R+  VLSEEELKKE+QE+LG LVR+++++M    +P     GEQ+MRE  RFH+ELVLRH+RASSLPMRLWGWEQTE+LI  S++HRW+AKAYLV
Sbjct:   63 RTKVCMIMMDNGTFGAAADLLEQQAARLESQARRREGVKATAAETARRAQLAQAEARQAAQNASSPAEGG-----GGGPADKEAVVARAVWVARAAVEAAEVAAAEARALAAA--------------KGEQWLGAESLSVVLAALLECKLGKDSPVGGGXXXXXXXXXXXXXXXXXXXXXXAGRRRRVLSEEELKKESQEALGHLVRNIRHVMMFQTSPGVPYAGEQEMRENVRFHSELVLRHLRASSLPMRLWGWEQTEDLINHSHRHRWHAKAYLV 321
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46945.11792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2G5_ECTSI4.110e-8252.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKZ1_9PHAE7.880e-4345.32Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46945contigH-elongata_contig46945:161..3182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_005890.1
Hectar predicted targeting categoryother localisation
Exons3
Model size999
Cds size999
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46945.11792.1prot_H-elongata_contig46945.11792.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46945 161..3182 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930774.8234048-CDS-H-elongata_contig46945:160..4001622930774.8234048-CDS-H-elongata_contig46945:160..400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46945 161..400 -
1691679564.6125312-CDS-H-elongata_contig46945:160..4001691679564.6125312-CDS-H-elongata_contig46945:160..400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46945 161..400 -
1622930774.8387406-CDS-H-elongata_contig46945:759..12991622930774.8387406-CDS-H-elongata_contig46945:759..1299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46945 760..1299 -
1691679564.6226132-CDS-H-elongata_contig46945:759..12991691679564.6226132-CDS-H-elongata_contig46945:759..1299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46945 760..1299 -
1622930774.8529131-CDS-H-elongata_contig46945:2963..31821622930774.8529131-CDS-H-elongata_contig46945:2963..3182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46945 2964..3182 -
1691679564.6323073-CDS-H-elongata_contig46945:2963..31821691679564.6323073-CDS-H-elongata_contig46945:2963..3182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46945 2964..3182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46945.11792.1

>prot_H-elongata_contig46945.11792.1 ID=prot_H-elongata_contig46945.11792.1|Name=mRNA_H-elongata_contig46945.11792.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=333bp
MESELRPADQTVESPPDLTAFETVRQGLAETNTVGWQLAPMSIELAAKWY
KLPESQRFLVDFLHQVTGIMLDQLRIKRSQQLMSNGAFETTATLLEKQAV
RLDRQARVRKEAKVKAEETARRAHIAQAEARQATSAAAGGNLVENGIGMG
DEDNADGLTLAAVSAAAIKAMEAAGFATEVSEAAAAAAASAASKGERWMG
ADSLSVLLGGLVDHRTDPQNRSEVMRVVKRACAAIMRQVSVLSEEELKKE
NQESLGILVRHLKYLMAPMGEQQMREVFRFHAELVLRHIRASSLPMRLWG
WEQTEELIALSYKHRWNAKAYLVRRTAAHYPH*
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mRNA from alignment at H-elongata_contig46945:161..3182-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46945.11792.1 ID=mRNA_H-elongata_contig46945.11792.1|Name=mRNA_H-elongata_contig46945.11792.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3022bp|location=Sequence derived from alignment at H-elongata_contig46945:161..3182- (Himanthalia elongata Himel1 dioecious)
ATGGAATCCGAACTGAGACCGGCCGACCAAACGGTGGAAAGCCCACCCGA
TCTGACGGCATTCGAGACCGTGCGCCAAGGCCTCGCGGAGACCAACACGG
TGGGGTGGCAACTTGCACCGATGTCCATCGAACTCGCGGCGAAGTGGTAC
AAGCTCCCGGAGTCTCAACGCTTCCTCGTGGATTTTTTGCACCAGGTCAC
GGGCATTATGTTGGACCAGGTGCGATTTTAGTCTAATTTGCTATATATAA
TTCGTTGTCCGTGGAGCGCAGAGGTAGAAACCGCGCGTAATCCGCTGGTG
CGGGGAAGTGCCACGAGGTACCAGGGTAGTTATTTCTGTTCTTTCTGCAG
CAGAAAACGTGAAGACGGAAGAAACCAACGCTCAAAAGATTGTTCGGCGA
GAAAGCGTTAATAGAGTGCTGAACTTTCATCGCGATCAAAATGTCGTGTG
GTAGGCGTGATCCCACCGGGGAGAGGTGGGTTGATTTATTAGAGCCGCAG
GCGGGATGAGCTGGGTTACAGTAGGTTAGATTGGTGGCCTAGCATGTCGA
AGGGCTCAGGGCTCATCGTTACAGAAGATAAAAACTCTCACGCAAAAATA
AAGTATATTTAGAGACGGCATCGGTGGTGGGAGGGGGGAAGGGACGGTGT
CTAAAGTAAGGAGACGGTGTCTAGAGTAAGCGCCGAGGTCTGGCGCGCCG
GTGAAGGTCTTATATTTATGCAGGTGCGGGCGACTGCTCATGCTGCCGGG
AGGTCGCACGATCCGTAATATTATTTCCTTGATGAATGTGTAGATGTGAC
TCAGAGAAGCACTTCTCTGGATGCGCGTTTCCAACCCGCTTTTCCCGCCT
GCGCGTGCGCGGCCGAGCCGCGTGGCTTGTCGATTCCCTCGATTTTAACA
CGCGGAAGAAGCCACTTTCCTGGCCTGTTTAGCTTTTCCTGAAAGGTACT
CAATTAAGCGTGTTTGGGATAATCGGTTATACCTGTATGTCTCTTCTAGG
AGCCTCACCCGACTTGACTTCACGCGCGACTTGTCTTCACGCTAGATTTA
TTTAATTTTAAAGTGAAAAAAAAACAAAGGAAAGGAAAGGAAAGGCAAGA
AATATTCAGTGTGGCAATGTCTCGAGCGGCACGCGACGGCAAGTCTAATA
ATAAAATTTTCTGCAACCAACCCGTGATATATTTTGTTTTTATCACTTTA
CCGTATCTGATATCATCCACGATGAATTTTCGTCTCGCATGGTGTCATTT
TCATCATAATTTTGGTTGTTTTTTAATTATCAATCGCGCGGCGCAGCACG
TAAGCAAGATGGAGCACTACCAGAAGGCTTGCGCAATCAGCACCCTGGAG
GCCGCCGGAAAGGTGCTGCCGCTCCTGCTGCTGGATGGCCGCCTGGAGTT
TGTAGAGACAGTGGTGCTGCTACTAGACCCTACCAAGCCGCTCTACAGCG
GGAGCAAAACCATGTGGACCAGCATACCCGGCGCCCCAGAGGTGCGTCTC
TTGGTTATTGGAGCATCACGTAGCCGTTTGGATCCGTCCCGTGTCTGTCT
GTGTCAGTGTGTCCGTCTGTTACTAGCCTGCTTATTTTGTCGTTTGTGGT
GCTTGTAGTGCAACGCGCGCGTAGGCAGGCAGACAGACAGGCAGCGTTAC
ACTCCACCCAAAATGAGCTGGTCATCATTCAAACCAATGCTGTTTTCTTG
TTCAACTTGTATGTTGCCATCCGTTATCTCCGCCACCACACCGCCTCCCC
ACTACGCGCTGCAACTATCCGCCATTCGAGCTTCGATCTCTTGTAGCTGG
TCACGCGTATTTGCTTTCTTTTATGACGATCGTAAGTTTTCCTTGAACCA
TCTTCACACCCTTTTTTTTTGTAAACGCCGCAGCTACGCATCAAACGGTC
ACAGCAGTTGATGAGCAACGGGGCCTTCGAAACTACGGCCACCCTCCTCG
AGAAACAGGCCGTGCGCCTCGACCGGCAGGCGAGGGTGCGAAAGGAGGCC
AAGGTCAAGGCGGAGGAGACGGCTCGGCGGGCACACATCGCGCAGGCGGA
AGCGAGGCAAGCAACCAGCGCCGCCGCCGGTGGAAACCTTGTCGAAAACG
GGATTGGAATGGGTGACGAAGACAATGCTGACGGTCTGACCTTGGCGGCG
GTTTCGGCAGCGGCAATAAAGGCGATGGAAGCGGCGGGGTTCGCCACCGA
GGTCTCCGAGGCGGCCGCCGCAGCCGCGGCTTCGGCCGCTTCTAAGGGAG
AGCGCTGGATGGGGGCGGACTCCCTGTCCGTCTTGTTGGGAGGCTTGGTG
GACCACAGGACGGACCCGCAGAACCGATCGGAGGTTATGAGGGTGGTCAA
GCGCGCCTGCGCGGCGATCATGCGCCAGGTCAGCGTGCTCAGCGAGGAGG
AGCTAAAAAAGGAGAACCAGGAGGTAATGTACACATAAGGACAAGATTGG
GCCAAGTTAGGTTTGAAGTTGATGTTCTTTTCGCGTCGGATGGAGTGCCG
AGGTGGTGTGCAAGCGGGGATTTGTGGGCTAGAGATTGGGGAGGTGGCCG
AGCAAAAGCTGGATCACCAATCGCAAGGAAGGAGTAAAAGTGCAAGGCCG
TTCCCCCCCCCAACGATAGGGTGATCATCGCTTCGTCGTTATTGTCGTTA
CAGTCGTTTGTCCCCGCTCCTCTCCTAAATTTCGTCTCGATTCATTCAGC
CCCTCGCCCTTCCGCTTCGTTCACGATTCGATGCAATACAATCCGGTGTG
ATGTGGTGCGGTGCTATTCCACGCGATTTCAGTCACTGGGCATACTGGTC
CGACACCTCAAGTACCTGATGGCGCCAATGGGGGAGCAGCAGATGCGTGA
GGTATTCCGGTTCCACGCGGAGTTGGTGCTCCGCCATATACGGGCTTCGT
CTCTTCCCATGCGCCTGTGGGGATGGGAGCAGACAGAAGAGCTTATCGCT
TTGAGCTACAAGCACCGCTGGAACGCCAAGGCGTACCTGGTGAGGCGCAC
AGCGGCACATTATCCCCATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig46945:161..3182-

>mRNA_H-elongata_contig46945.11792.1 ID=mRNA_H-elongata_contig46945.11792.1|Name=mRNA_H-elongata_contig46945.11792.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1998bp|location=Sequence derived from alignment at H-elongata_contig46945:161..3182- (Himanthalia elongata Himel1 dioecious)
ATGGAATCCGAACTGAGACCGGCCGACCAAACGGTGGAAAGCCCACCCGA
TCTGACGGCATTCGAGACCGTGCGCCAAGGCCTCGCGGAGACCAACACGG
TGGGGTGGCAACTTGCACCGATGTCCATCGAACTCGCGGCGAAGTGGTAC
AAGCTCCCGGAGTCTCAACGCTTCCTCGTGGATTTTTTGCACCAGGTCAC
GGGCATTATGTTGGACCAGATGGAATCCGAACTGAGACCGGCCGACCAAA
CGGTGGAAAGCCCACCCGATCTGACGGCATTCGAGACCGTGCGCCAAGGC
CTCGCGGAGACCAACACGGTGGGGTGGCAACTTGCACCGATGTCCATCGA
ACTCGCGGCGAAGTGGTACAAGCTCCCGGAGTCTCAACGCTTCCTCGTGG
ATTTTTTGCACCAGGTCACGGGCATTATGTTGGACCAGCTACGCATCAAA
CGGTCACAGCAGTTGATGAGCAACGGGGCCTTCGAAACTACGGCCACCCT
CCTCGAGAAACAGGCCGTGCGCCTCGACCGGCAGGCGAGGGTGCGAAAGG
AGGCCAAGGTCAAGGCGGAGGAGACGGCTCGGCGGGCACACATCGCGCAG
GCGGAAGCGAGGCAAGCAACCAGCGCCGCCGCCGGTGGAAACCTTGTCGA
AAACGGGATTGGAATGGGTGACGAAGACAATGCTGACGGTCTGACCTTGG
CGGCGGTTTCGGCAGCGGCAATAAAGGCGATGGAAGCGGCGGGGTTCGCC
ACCGAGGTCTCCGAGGCGGCCGCCGCAGCCGCGGCTTCGGCCGCTTCTAA
GGGAGAGCGCTGGATGGGGGCGGACTCCCTGTCCGTCTTGTTGGGAGGCT
TGGTGGACCACAGGACGGACCCGCAGAACCGATCGGAGGTTATGAGGGTG
GTCAAGCGCGCCTGCGCGGCGATCATGCGCCAGGTCAGCGTGCTCAGCGA
GGAGGAGCTAAAAAAGGAGAACCAGGAGCTACGCATCAAACGGTCACAGC
AGTTGATGAGCAACGGGGCCTTCGAAACTACGGCCACCCTCCTCGAGAAA
CAGGCCGTGCGCCTCGACCGGCAGGCGAGGGTGCGAAAGGAGGCCAAGGT
CAAGGCGGAGGAGACGGCTCGGCGGGCACACATCGCGCAGGCGGAAGCGA
GGCAAGCAACCAGCGCCGCCGCCGGTGGAAACCTTGTCGAAAACGGGATT
GGAATGGGTGACGAAGACAATGCTGACGGTCTGACCTTGGCGGCGGTTTC
GGCAGCGGCAATAAAGGCGATGGAAGCGGCGGGGTTCGCCACCGAGGTCT
CCGAGGCGGCCGCCGCAGCCGCGGCTTCGGCCGCTTCTAAGGGAGAGCGC
TGGATGGGGGCGGACTCCCTGTCCGTCTTGTTGGGAGGCTTGGTGGACCA
CAGGACGGACCCGCAGAACCGATCGGAGGTTATGAGGGTGGTCAAGCGCG
CCTGCGCGGCGATCATGCGCCAGGTCAGCGTGCTCAGCGAGGAGGAGCTA
AAAAAGGAGAACCAGGAGTCACTGGGCATACTGGTCCGACACCTCAAGTA
CCTGATGGCGCCAATGGGGGAGCAGCAGATGCGTGAGGTATTCCGGTTCC
ACGCGGAGTTGGTGCTCCGCCATATACGGGCTTCGTCTCTTCCCATGCGC
CTGTGGGGATGGGAGCAGACAGAAGAGCTTATCGCTTTGAGCTACAAGCA
CCGCTGGAACGCCAAGGCGTACCTGGTGAGGCGCACAGCGGCACATTATC
CCCATTAATCACTGGGCATACTGGTCCGACACCTCAAGTACCTGATGGCG
CCAATGGGGGAGCAGCAGATGCGTGAGGTATTCCGGTTCCACGCGGAGTT
GGTGCTCCGCCATATACGGGCTTCGTCTCTTCCCATGCGCCTGTGGGGAT
GGGAGCAGACAGAAGAGCTTATCGCTTTGAGCTACAAGCACCGCTGGAAC
GCCAAGGCGTACCTGGTGAGGCGCACAGCGGCACATTATCCCCATTAA
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