mRNA_H-elongata_contig46607.11759.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig46607.11759.1 vs. uniprot
Match: A0A835Z6T3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6T3_9STRA) HSP 1 Score: 168 bits (426), Expect = 1.590e-48 Identity = 93/234 (39.74%), Postives = 111/234 (47.44%), Query Frame = 1
Query: 40 CGTATSSSPCCIECFGLSYCDVLNGYKVEDKYYPGEPTILGSCDNFEDRASRLDVFGPSKT-----------------------------------------------FRDTYACREMVLDYTCLWWGSDNEMYDNRCGVEAQVYPCRSYCVQLAKTCANNVLEWQELCRP--------------------------INCPPIDDECMPGPYTQDPDE--ACYLYEYHSPLSAG 516
CG A + PCC+ C GL+ C VLN Y VE+KYYPG +GSC NF+DR SRL VFGP KT FRDT CR+ V YTCLWWG+DN +DNRCG A PCRS+CVQ+A+ CAN+ W I CPPI D+C+PGP+ P E AC+LYEY+SPL G
Sbjct: 52 CGVAPNPVPCCVLCLGLNQCSVLNSYAVEEKYYPGSSGTVGSCTNFDDRVSRLAVFGPEKTVWXXXXXXXXXXXXXXXSCDAAQVXXXXXXXXEKTVSXXXXXXXXXXFRDTPDCRKWVYAYTCLWWGTDNAHFDNRCGSFANRPPCRSFCVQVAEVCANDP-GWNAAAXXXXXXXAAAQVXXXXXXXXXXXXXXXGIACPPIADDCVPGPFVTHPVEPDACFLYEYNSPLQGG 284
BLAST of mRNA_H-elongata_contig46607.11759.1 vs. uniprot
Match: A0A7S2MQ94_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MQ94_9STRA) HSP 1 Score: 164 bits (416), Expect = 6.310e-48 Identity = 79/162 (48.77%), Postives = 98/162 (60.49%), Query Frame = 1
Query: 37 DCGTATSSSPCCIECFGLSYCDVLNGYKVEDKYYPGEPTILGSCDNFEDRASRLDVFGPSK---TFRDTYACREMVLDYTCLWWGSDNEMYDNRCGVEAQV-YPCRSYCVQLAKTCANNVLEWQELCRPINCPPIDDECMPGPYTQDPDEACYLYEYHSPLS 510
DCG + PCCI+C L YC +N Y +EDKYYP E I GSCD +DR RL++FGP+ TFRDT CR +V+DY CLWW S+N+ YDNRC + PCRSYCVQ+ CAN+ L+W + C I C + C GP D D C + EY S S
Sbjct: 48 DCGIDDNQCPCCIQCESLDYCSAINFYVMEDKYYPTENDITGSCDMLDDRIQRLEIFGPASLGYTFRDTDQCRSLVMDYICLWWASENDHYDNRCDYGEDIDRPCRSYCVQVGLVCANS-LDWLDTCYHIECASNEAGCTTGP--DDIDYKCAIPEYISSFS 206
BLAST of mRNA_H-elongata_contig46607.11759.1 vs. uniprot
Match: A0A7S2C5P0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C5P0_9STRA) HSP 1 Score: 158 bits (399), Expect = 1.950e-44 Identity = 78/158 (49.37%), Postives = 95/158 (60.13%), Query Frame = 1
Query: 37 DCGTATSSSPCCIECFG--LSYC-DVLNGYKVEDKYYPGEPTILGSCDNFEDRASRLDVFGPSKTFRDTYACREMVLDYTCLWWGSDNEMYDNRCGVEAQVY-PCRSYCVQLAKTCANNVLEWQELCRPINCPPIDD-ECMPGPYTQDPDEACYLYEY 495
DCGT+ PCCI C +SYC D L G +ED+YYP E I GSCDN ++R LDVFG KTFRD CR++V +Y CLWWGS+N Y+NRC Q PCR +CVQ+ CANN +W LC I C D EC P PY+ C +YE+
Sbjct: 121 DCGTSDEECPCCIRCLNEEMSYCHDALGGKLLEDQYYPTEKGISGSCDNLDERVGALDVFGKGKTFRDNDECRDLVREYVCLWWGSENAHYENRCNNGGQAAKPCRGFCVQVGLVCANNE-DWMNLCYDIPCSAGDGPECTPAPYSTS--FLCSVYEF 275
BLAST of mRNA_H-elongata_contig46607.11759.1 vs. uniprot
Match: A0A8J2WWI3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWI3_9STRA) HSP 1 Score: 147 bits (372), Expect = 1.540e-40 Identity = 73/153 (47.71%), Postives = 96/153 (62.75%), Query Frame = 1
Query: 67 CCIECFG-LSYCDVLNGYKVEDKYYPGEPTILGSCDNFEDRASRLDVFGPSKTFRDTYACREMVLDYTCLWWGSD--NEMYDNRCGVEAQVY--PCRSYCVQLAKTCANNVLEWQELCRPINCPPIDDECMPGP-----YTQDPDEACYLYEY 495
CC C L C + GY VEDKYYP E ++ GSCD+ + R + LDVFGPSKTFRD CR +V +Y CLWWGS+ ++ +N C + + PCR +CVQ+A CAN+ L++Q LC+ I CPPI++ CMP P T ACY+Y Y
Sbjct: 120 CCSLCKNDLQTCWRMAGYLVEDKYYPSEQSVTGSCDDIDRRVANLDVFGPSKTFRDNDLCRRLVNEYMCLWWGSEGVDQSSENHCSSKGVILVAPCRPFCVQVAIQCANS-LDYQRLCQAIPCPPIEETCMPEPRSVATVTLSKTMACYVYRY 271
BLAST of mRNA_H-elongata_contig46607.11759.1 vs. uniprot
Match: A0A7S0SRC5_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SRC5_9STRA) HSP 1 Score: 124 bits (310), Expect = 6.000e-32 Identity = 60/149 (40.27%), Postives = 87/149 (58.39%), Query Frame = 1
Query: 52 TSSSPCCIECFGLSYCDVLNGYKVEDKYYPGEPTILGSCDNFEDRASRL--DVFGPSKTFRDTYACREMVLDYTCLWWGSDNEMYDNRCGVEAQVY-------------PCRSYCVQLAKTCANNVLEWQELCRPINCPPIDDECMPGP 453
TS PC I C GL YC +NG +++ YYP + ++LGSC E R+ ++FG T+RDT CR +V+ Y CL++GS+N+MY N C + V PC+S+CVQ+A CAN+ +++ +C I CPP +D C P P
Sbjct: 43 TSEVPCVI-CRGLKYCSAINGLMLQEVYYPYDLSLLGSCYVLEAFGKRIYSEIFGNGGTYRDTVECRSIVMQYLCLFYGSNNDMYTNYCIYQEDVSDANPANHKVAPRPPCKSFCVQVATVCANDPVDFLYICNEIACPPTEDACNPDP 190
BLAST of mRNA_H-elongata_contig46607.11759.1 vs. uniprot
Match: A0A7S2FUR6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FUR6_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.300e-24 Identity = 50/102 (49.02%), Postives = 61/102 (59.80%), Query Frame = 1
Query: 196 LDVFGPSKTFRDTYACREMVLDYTCLWWGSDNEMYDNRCGVEAQVY-PCRSYCVQLAKTCANNVLEWQELCRPINCPPIDD-ECMPGPYTQDPDEACYLYEY 495
LDVFG KTFRD CR++V +Y CLWWGS+N Y+NRC Q PCR +CVQ+ CANN +W LC I C D EC P PY+ C +YE+
Sbjct: 8 LDVFGKGKTFRDNDECRDLVREYVCLWWGSENAHYENRCNNGGQAAKPCRGFCVQVGLVCANNE-DWMNLCYDIPCSAGDGPECTPAPYSTS--FLCSVYEF 106
BLAST of mRNA_H-elongata_contig46607.11759.1 vs. uniprot
Match: A0A482SB23_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SB23_9ARCH) HSP 1 Score: 60.5 bits (145), Expect = 1.780e-8 Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 1
Query: 70 CIECFGLSYCDVLNGYKVEDKYYPGEPTILGSCDNFEDRASRLD--VFGPSKTFRDTYACR 246
C+ C GLS C LNGY V++KYYP +C + SR++ +FG S+TFRDT CR
Sbjct: 69 CVICRGLSVCTALNGYLVQEKYYPKNLNFRETCKVIDTFGSRIEKSIFGGSRTFRDTAQCR 129 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46607.11759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig46607.11759.1 >prot_H-elongata_contig46607.11759.1 ID=prot_H-elongata_contig46607.11759.1|Name=mRNA_H-elongata_contig46607.11759.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=175bp ALGRRGLATTSSDCGTATSSSPCCIECFGLSYCDVLNGYKVEDKYYPGEPback to top mRNA from alignment at H-elongata_contig46607:134..3080+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig46607.11759.1 ID=mRNA_H-elongata_contig46607.11759.1|Name=mRNA_H-elongata_contig46607.11759.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2947bp|location=Sequence derived from alignment at H-elongata_contig46607:134..3080+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig46607:134..3080+ >mRNA_H-elongata_contig46607.11759.1 ID=mRNA_H-elongata_contig46607.11759.1|Name=mRNA_H-elongata_contig46607.11759.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1050bp|location=Sequence derived from alignment at H-elongata_contig46607:134..3080+ (Himanthalia elongata Himel1 dioecious)back to top |