prot_H-elongata_contig46488.11744.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig46488.11744.1
Unique Nameprot_H-elongata_contig46488.11744.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length48
Homology
BLAST of mRNA_H-elongata_contig46488.11744.1 vs. uniprot
Match: A0A6H5L2C7_9PHAE (Bms1-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2C7_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.870e-20
Identity = 40/47 (85.11%), Postives = 45/47 (95.74%), Query Frame = 0
Query:    1 MFGYVRGTHLKVGQRVHVIGAGDFGMSEVTALDDPCPLPSKEKVSNR 47
            +FGYVRGTHLK GQRVHVIGAGDFGM+EV+AL DPCPLP+KEKV+NR
Sbjct:  279 VFGYVRGTHLKAGQRVHVIGAGDFGMAEVSALQDPCPLPTKEKVANR 325          
BLAST of mRNA_H-elongata_contig46488.11744.1 vs. uniprot
Match: A0A835YHK8_9STRA (Ribosome biogenesis protein BMS1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHK8_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 8.070e-13
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 0
Query:    1 MFGYVRGTHLKVGQRVHVIGAGDFGMSEVTALDDPCPLP 39
            ++GYVRGTHLK G RVHVIGAGD+ MSEV+ L DPCPLP
Sbjct:  293 VYGYVRGTHLKPGMRVHVIGAGDYSMSEVSLLPDPCPLP 331          
BLAST of mRNA_H-elongata_contig46488.11744.1 vs. uniprot
Match: A0A1V9Z1F2_9STRA (Ribosome biogenesis protein BMS1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1F2_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.510e-12
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 0
Query:    1 MFGYVRGTHLKVGQRVHVIGAGDFGMSEVTALDDPCPLPSK--EKV 44
            ++GY+RGTHLK G +VHV GAGDF M  VT+L DPCPLPSK  EKV
Sbjct:  283 LYGYLRGTHLKPGMKVHVAGAGDFFMESVTSLPDPCPLPSKNSEKV 328          
BLAST of mRNA_H-elongata_contig46488.11744.1 vs. uniprot
Match: A0A1V9ZFU4_9STRA (Ribosome biogenesis protein BMS1 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZFU4_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.800e-12
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0
Query:    1 MFGYVRGTHLKVGQRVHVIGAGDFGMSEVTALDDPCPLPSK--EKV 44
            ++GY+RGTHLK G ++HV GAGDF M  +T+L DPCPLPSK  EKV
Sbjct:  280 LYGYLRGTHLKPGMKIHVAGAGDFYMESITSLPDPCPLPSKNSEKV 325          
BLAST of mRNA_H-elongata_contig46488.11744.1 vs. uniprot
Match: A0A6A5ABJ1_9STRA (Bms1-type G domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ABJ1_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.820e-12
Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = 0
Query:    1 MFGYVRGTHLKVGQRVHVIGAGDFGMSEVTALDDPCPLPSK 41
            ++GY+RGTHLK G ++HV GAGDF M+ VT+L DPCPLPSK
Sbjct:  286 LYGYLRGTHLKPGMKIHVAGAGDFFMASVTSLPDPCPLPSK 326          
BLAST of mRNA_H-elongata_contig46488.11744.1 vs. uniprot
Match: A0A067C0E8_SAPPC (Bms1-type G domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C0E8_SAPPC)

HSP 1 Score: 68.6 bits (166), Expect = 2.820e-12
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 0
Query:    1 MFGYVRGTHLKVGQRVHVIGAGDFGMSEVTALDDPCPLPSK 41
            ++GY+RGTHLK G +VHV GAGDF M  VT+L DPCPLPSK
Sbjct:  283 LYGYLRGTHLKPGMKVHVAGAGDFYMESVTSLPDPCPLPSK 323          
BLAST of mRNA_H-elongata_contig46488.11744.1 vs. uniprot
Match: A0A024U1E0_9STRA (Bms1-type G domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U1E0_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.820e-12
Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = 0
Query:    1 MFGYVRGTHLKVGQRVHVIGAGDFGMSEVTALDDPCPLPSK 41
            ++GY+RGTHLK G ++HV GAGDF M+ VT+L DPCPLPSK
Sbjct:  284 LYGYLRGTHLKPGMKIHVAGAGDFFMASVTSLPDPCPLPSK 324          
BLAST of mRNA_H-elongata_contig46488.11744.1 vs. uniprot
Match: T0Q4Q6_SAPDV (Bms1-type G domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q4Q6_SAPDV)

HSP 1 Score: 68.6 bits (166), Expect = 2.820e-12
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 0
Query:    1 MFGYVRGTHLKVGQRVHVIGAGDFGMSEVTALDDPCPLPSK 41
            ++GY+RGTHLK G +VHV GAGDF M  VT+L DPCPLPSK
Sbjct:  283 LYGYLRGTHLKPGMKVHVAGAGDFYMESVTSLPDPCPLPSK 323          
BLAST of mRNA_H-elongata_contig46488.11744.1 vs. uniprot
Match: A0A1E7FFN9_9STRA (DUF663-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFN9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.850e-12
Identity = 26/42 (61.90%), Postives = 36/42 (85.71%), Query Frame = 0
Query:    2 FGYVRGTHLKVGQRVHVIGAGDFGMSEVTALDDPCPLPSKEK 43
            +G+VRG+H+K G +VH+IG GDFGM+E++ L DPCP+P KEK
Sbjct:  144 YGWVRGSHMKKGTKVHLIGVGDFGMAEISPLPDPCPIPDKEK 185          
BLAST of mRNA_H-elongata_contig46488.11744.1 vs. uniprot
Match: B8BZQ9_THAPS (Bms1-type G domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZQ9_THAPS)

HSP 1 Score: 68.2 bits (165), Expect = 3.850e-12
Identity = 28/44 (63.64%), Postives = 38/44 (86.36%), Query Frame = 0
Query:    2 FGYVRGTHLKVGQRVHVIGAGDFGMSEVTALDDPCPLPSKEKVS 45
            +GYVRGT+LK G +VH+IG GD+GM+E++AL DPCP+ +KEK S
Sbjct:  267 YGYVRGTNLKEGMKVHLIGVGDYGMAEISALPDPCPVVNKEKDS 310          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46488.11744.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2C7_9PHAE2.870e-2085.11Bms1-type G domain-containing protein n=2 Tax=Ecto... [more]
A0A835YHK8_9STRA8.070e-1376.92Ribosome biogenesis protein BMS1 n=1 Tax=Tribonema... [more]
A0A1V9Z1F2_9STRA1.510e-1269.57Ribosome biogenesis protein BMS1 n=1 Tax=Achlya hy... [more]
A0A1V9ZFU4_9STRA2.800e-1265.22Ribosome biogenesis protein BMS1 (Fragment) n=1 Ta... [more]
A0A6A5ABJ1_9STRA2.820e-1268.29Bms1-type G domain-containing protein (Fragment) n... [more]
A0A067C0E8_SAPPC2.820e-1270.73Bms1-type G domain-containing protein n=1 Tax=Sapr... [more]
A0A024U1E0_9STRA2.820e-1268.29Bms1-type G domain-containing protein n=2 Tax=Apha... [more]
T0Q4Q6_SAPDV2.820e-1270.73Bms1-type G domain-containing protein n=1 Tax=Sapr... [more]
A0A1E7FFN9_9STRA3.850e-1261.90DUF663-domain-containing protein n=1 Tax=Fragilari... [more]
B8BZQ9_THAPS3.850e-1263.64Bms1-type G domain-containing protein (Fragment) n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012948AARP2CNPFAMPF08142AARP2CNcoord: 2..35
e-value: 6.1E-11
score: 42.3
IPR039761Ribosome biogenesis protein Bms1/Tsr1PANTHERPTHR12858RIBOSOME BIOGENESIS PROTEINcoord: 1..43
NoneNo IPR availablePANTHERPTHR12858:SF2RIBOSOME BIOGENESIS PROTEIN BMS1 HOMOLOGcoord: 1..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46488contigH-elongata_contig46488:555..698 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46488.11744.1mRNA_H-elongata_contig46488.11744.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig46488 537..698 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig46488.11744.1 ID=prot_H-elongata_contig46488.11744.1|Name=mRNA_H-elongata_contig46488.11744.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
MFGYVRGTHLKVGQRVHVIGAGDFGMSEVTALDDPCPLPSKEKVSNR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012948AARP2CN
IPR039761Bms1/Tsr1