mRNA_H-elongata_contig46488.11744.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46488.11744.1
Unique NamemRNA_H-elongata_contig46488.11744.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig46488.11744.1 vs. uniprot
Match: A0A6H5L2C7_9PHAE (Bms1-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2C7_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.400e-24
Identity = 45/53 (84.91%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 CDRDVAMFGYVRGTHLKVGQRVHVIGAGDFGMSEVTALDDPCPLPSKEKVSNR 159
            CDR+VA+FGYVRGTHLK GQRVHVIGAGDFGM+EV+AL DPCPLP+KEKV+NR
Sbjct:  273 CDREVAVFGYVRGTHLKAGQRVHVIGAGDFGMAEVSALQDPCPLPTKEKVANR 325
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BLAST of mRNA_H-elongata_contig46488.11744.1 vs. uniprot
Match: A0A835YHK8_9STRA (Ribosome biogenesis protein BMS1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHK8_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 6.640e-17
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 CDRDVAMFGYVRGTHLKVGQRVHVIGAGDFGMSEVTALDDPCPLP 135
            CDRDV ++GYVRGTHLK G RVHVIGAGD+ MSEV+ L DPCPLP
Sbjct:  287 CDRDVTVYGYVRGTHLKPGMRVHVIGAGDYSMSEVSLLPDPCPLP 331
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BLAST of mRNA_H-elongata_contig46488.11744.1 vs. uniprot
Match: A0A1V9Z1F2_9STRA (Ribosome biogenesis protein BMS1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1F2_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.100e-15
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 CDRDVAMFGYVRGTHLKVGQRVHVIGAGDFGMSEVTALDDPCPLPSK--EKV 150
            CDR V ++GY+RGTHLK G +VHV GAGDF M  VT+L DPCPLPSK  EKV
Sbjct:  277 CDRKVTLYGYLRGTHLKPGMKVHVAGAGDFFMESVTSLPDPCPLPSKNSEKV 328
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BLAST of mRNA_H-elongata_contig46488.11744.1 vs. uniprot
Match: A0A1E7FFN9_9STRA (DUF663-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFN9_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.050e-15
Identity = 30/49 (61.22%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 CDRDVAMFGYVRGTHLKVGQRVHVIGAGDFGMSEVTALDDPCPLPSKEK 147
            CDR V  +G+VRG+H+K G +VH+IG GDFGM+E++ L DPCP+P KEK
Sbjct:  137 CDRSVTFYGWVRGSHMKKGTKVHLIGVGDFGMAEISPLPDPCPIPDKEK 185
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BLAST of mRNA_H-elongata_contig46488.11744.1 vs. uniprot
Match: T0Q4Q6_SAPDV (Bms1-type G domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q4Q6_SAPDV)

HSP 1 Score: 77.8 bits (190), Expect = 2.050e-15
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 CDRDVAMFGYVRGTHLKVGQRVHVIGAGDFGMSEVTALDDPCPLPSK 141
            CDR V ++GY+RGTHLK G +VHV GAGDF M  VT+L DPCPLPSK
Sbjct:  277 CDRKVTLYGYLRGTHLKPGMKVHVAGAGDFYMESVTSLPDPCPLPSK 323
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BLAST of mRNA_H-elongata_contig46488.11744.1 vs. uniprot
Match: A0A067C0E8_SAPPC (Bms1-type G domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C0E8_SAPPC)

HSP 1 Score: 77.4 bits (189), Expect = 2.800e-15
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 CDRDVAMFGYVRGTHLKVGQRVHVIGAGDFGMSEVTALDDPCPLPSK 141
            CDR + ++GY+RGTHLK G +VHV GAGDF M  VT+L DPCPLPSK
Sbjct:  277 CDRKITLYGYLRGTHLKPGMKVHVAGAGDFYMESVTSLPDPCPLPSK 323
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BLAST of mRNA_H-elongata_contig46488.11744.1 vs. uniprot
Match: B8BZQ9_THAPS (Bms1-type G domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZQ9_THAPS)

HSP 1 Score: 77.4 bits (189), Expect = 2.800e-15
Identity = 31/51 (60.78%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    1 CDRDVAMFGYVRGTHLKVGQRVHVIGAGDFGMSEVTALDDPCPLPSKEKVS 153
            C+R +A +GYVRGT+LK G +VH+IG GD+GM+E++AL DPCP+ +KEK S
Sbjct:  260 CERSIAFYGYVRGTNLKEGMKVHLIGVGDYGMAEISALPDPCPVVNKEKDS 310
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BLAST of mRNA_H-elongata_contig46488.11744.1 vs. uniprot
Match: A0A565CGE5_9BRAS (AARP2CN domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565CGE5_9BRAS)

HSP 1 Score: 75.9 bits (185), Expect = 3.110e-15
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 CDRDVAMFGYVRGTHLKVGQRVHVIGAGDFGMSEVTALDDPCPLPSKEK 147
            CDR++A++GY+RG +LK G  VH+ G GD+G+S VT L DPCPLPSK K
Sbjct:  212 CDRNIALYGYLRGCNLKQGMNVHIAGVGDYGLSGVTVLSDPCPLPSKNK 260
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BLAST of mRNA_H-elongata_contig46488.11744.1 vs. uniprot
Match: A0A087G0Y9_ARAAL (Bms1-type G domain-containing protein n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087G0Y9_ARAAL)

HSP 1 Score: 76.3 bits (186), Expect = 7.140e-15
Identity = 29/49 (59.18%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 CDRDVAMFGYVRGTHLKVGQRVHVIGAGDFGMSEVTALDDPCPLPSKEK 147
            CDR++A++GY+RG +LK G  VH+ G GD+G++ V+ LDDPCPLPSK+K
Sbjct:  273 CDRNIALYGYLRGCNLKEGMNVHISGVGDYGLASVSVLDDPCPLPSKKK 321
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BLAST of mRNA_H-elongata_contig46488.11744.1 vs. uniprot
Match: L8HJR5_ACACA (Ribosome biogenesis protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HJR5_ACACA)

HSP 1 Score: 75.1 bits (183), Expect = 1.820e-14
Identity = 31/49 (63.27%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 CDRDVAMFGYVRGTHLKVGQRVHVIGAGDFGMSEVTALDDPCPLPSKEK 147
            C RDV ++G+VRGT+LK   +VHV G GDFG+ E+TAL DPCPLPS+E+
Sbjct:  280 CPRDVTLYGWVRGTYLKPSTKVHVPGCGDFGLEELTALGDPCPLPSQER 328
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46488.11744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2C7_9PHAE2.400e-2484.91Bms1-type G domain-containing protein n=2 Tax=Ecto... [more]
A0A835YHK8_9STRA6.640e-1777.78Ribosome biogenesis protein BMS1 n=1 Tax=Tribonema... [more]
A0A1V9Z1F2_9STRA1.100e-1569.23Ribosome biogenesis protein BMS1 n=1 Tax=Achlya hy... [more]
A0A1E7FFN9_9STRA2.050e-1561.22DUF663-domain-containing protein n=1 Tax=Fragilari... [more]
T0Q4Q6_SAPDV2.050e-1570.21Bms1-type G domain-containing protein n=1 Tax=Sapr... [more]
A0A067C0E8_SAPPC2.800e-1568.09Bms1-type G domain-containing protein n=1 Tax=Sapr... [more]
B8BZQ9_THAPS2.800e-1560.78Bms1-type G domain-containing protein (Fragment) n... [more]
A0A565CGE5_9BRAS3.110e-1561.22AARP2CN domain-containing protein n=1 Tax=Arabis n... [more]
A0A087G0Y9_ARAAL7.140e-1559.18Bms1-type G domain-containing protein n=1 Tax=Arab... [more]
L8HJR5_ACACA1.820e-1463.27Ribosome biogenesis protein n=1 Tax=Acanthamoeba c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46488contigH-elongata_contig46488:537..698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1e-16
Seed eggNOG ortholog2880.D7G454
Preferred nameBMS1
KEGG koko:K14569,ko:K15009
KEGG Pathwayko03008,ko04724,map03008,map04724
GOsGO:0000166,GO:0000462,GO:0000469,GO:0000478,GO:0000479,GO:0001882,GO:0001883,GO:0001959,GO:0001960,GO:0002682,GO:0002683,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006417,GO:0006508,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009605,GO:0009607,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010605,GO:0010608,GO:0010629,GO:0010646,GO:0010648,GO:0016032,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0018995,GO:0019001,GO:0019048,GO:0019049,GO:0019054,GO:0019056,GO:0019057,GO:0019058,GO:0019079,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0019785,GO:0020012,GO:0022613,GO:0023051,GO:0023057,GO:0030430,GO:0030490,GO:0030515,GO:0030682,GO:0030683,GO:0030684,GO:0030686,GO:0031323,GO:0031325,GO:0031326,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031974,GO:0031981,GO:0032268,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033643,GO:0033646,GO:0033647,GO:0033648,GO:0034248,GO:0034470,GO:0034511,GO:0034641,GO:0034660,GO:0035639,GO:0035821,GO:0036094,GO:0039502,GO:0039503,GO:0039506,GO:0039507,GO:0039519,GO:0039520,GO:0039579,GO:0039604,GO:0039606,GO:0039611,GO:0039644,GO:0039648,GO:0039653,GO:0039656,GO:0039657,GO:0039690,GO:0039694,GO:0042025,GO:0042254,GO:0042274,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043656,GO:0043657,GO:0044003,GO:0044068,GO:0044073,GO:0044085,GO:0044092,GO:0044215,GO:0044216,GO:0044217,GO:0044237,GO:0044238,GO:0044359,GO:0044362,GO:0044403,GO:0044413,GO:0044414,GO:0044415,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044501,GO:0045088,GO:0045824,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050690,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051252,GO:0051701,GO:0051704,GO:0051707,GO:0051805,GO:0051807,GO:0051817,GO:0051832,GO:0051833,GO:0051834,GO:0052026,GO:0052027,GO:0052029,GO:0052031,GO:0052037,GO:0052055,GO:0052056,GO:0052167,GO:0052170,GO:0052173,GO:0052200,GO:0052204,GO:0052205,GO:0052250,GO:0052255,GO:0052261,GO:0052306,GO:0052309,GO:0052312,GO:0052493,GO:0052552,GO:0052553,GO:0052561,GO:0052562,GO:0052564,GO:0052572,GO:0060255,GO:0060338,GO:0060339,GO:0060759,GO:0060761,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0071704,GO:0071840,GO:0075109,GO:0075111,GO:0075112,GO:0075114,GO:0075136,GO:0075528,GO:0080090,GO:0080134,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.U3 snoRNA binding
EggNOG OGsCOG5192@1,KOG1951@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size144
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930770.0024512-UTR-H-elongata_contig46488:536..5541622930770.0024512-UTR-H-elongata_contig46488:536..554Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46488 537..554 +
1691679562.2261107-UTR-H-elongata_contig46488:536..5541691679562.2261107-UTR-H-elongata_contig46488:536..554Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46488 537..554 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930770.0177264-CDS-H-elongata_contig46488:554..6981622930770.0177264-CDS-H-elongata_contig46488:554..698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46488 555..698 +
1691679562.236261-CDS-H-elongata_contig46488:554..6981691679562.236261-CDS-H-elongata_contig46488:554..698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46488 555..698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46488.11744.1prot_H-elongata_contig46488.11744.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46488 555..698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46488.11744.1

>prot_H-elongata_contig46488.11744.1 ID=prot_H-elongata_contig46488.11744.1|Name=mRNA_H-elongata_contig46488.11744.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
MFGYVRGTHLKVGQRVHVIGAGDFGMSEVTALDDPCPLPSKEKVSNR*
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mRNA from alignment at H-elongata_contig46488:537..698+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46488.11744.1 ID=mRNA_H-elongata_contig46488.11744.1|Name=mRNA_H-elongata_contig46488.11744.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig46488:537..698+ (Himanthalia elongata Himel1 dioecious)
TGCGACCGCGACGTGGCGATGTTCGGCTACGTCAGGGGTACGCACCTTAA
GGTCGGGCAGCGGGTCCACGTCATTGGGGCGGGGGACTTCGGGATGTCCG
AGGTCACGGCGCTCGACGACCCCTGCCCTTTGCCTTCCAAGGAAAAGGTG
TCCAATCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig46488:537..698+

>mRNA_H-elongata_contig46488.11744.1 ID=mRNA_H-elongata_contig46488.11744.1|Name=mRNA_H-elongata_contig46488.11744.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig46488:537..698+ (Himanthalia elongata Himel1 dioecious)
ATGTTCGGCTACGTCAGGGGTACGCACCTTAAGGTCGGGCAGCGGGTCCA
CGTCATTGGGGCGGGGGACTTCGGGATGTCCGAGGTCACGGCGCTCGACG
ACCCCTGCCCTTTGCCTTCCAAGGAAAAGGTGTCCAATCGGTGAATGTTC
GGCTACGTCAGGGGTACGCACCTTAAGGTCGGGCAGCGGGTCCACGTCAT
TGGGGCGGGGGACTTCGGGATGTCCGAGGTCACGGCGCTCGACGACCCCT
GCCCTTTGCCTTCCAAGGAAAAGGTGTCCAATCGGTGA
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