prot_H-elongata_contig46453.11739.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig46453.11739.1
Unique Nameprot_H-elongata_contig46453.11739.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length179
Homology
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BLAST of mRNA_H-elongata_contig46453.11739.1 vs. uniprot
Match: D8LHW2_ECTSI (HP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHW2_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 7.310e-17
Identity = 46/97 (47.42%), Postives = 58/97 (59.79%), Query Frame = 0 
Query:   83 GDGFYGSNVSGEALVRVGWRKCSSRARGAQAGDRTPYRYRRLVGVGNC-WPAHVQSSRRERWLAPAEFEAVFEMSFEAFENLPRWKQVSLKQEVCLF 178
            GDG      +   L+RVG       + G   G  TP+RYRRL+G+    WP+ V  +RRE WL P EFEAVF MSF  F  LP WK+V+LK+E+ LF
Sbjct:  240 GDGNPARASAEPPLLRVG-------SGGGDGGGTTPFRYRRLMGLSRRGWPSCVNPARREEWLCPVEFEAVFAMSFSEFRALPSWKRVALKRELLLF 329
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BLAST of mRNA_H-elongata_contig46453.11739.1 vs. uniprot
Match: A0A6H5L198_9PHAE (HP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L198_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.870e-16
Identity = 45/97 (46.39%), Postives = 57/97 (58.76%), Query Frame = 0 
Query:   83 GDGFYGSNVSGEALVRVGWRKCSSRARGAQAGDRTPYRYRRLVGVGNC-WPAHVQSSRRERWLAPAEFEAVFEMSFEAFENLPRWKQVSLKQEVCLF 178
            GDG      +    +RVG       + G   G  TP+RYRRL+G+    WP+ V  +RRE WL P EFEAVF MSF  F  LP WK+V+LK+E+ LF
Sbjct:  598 GDGTSSRASAEPPFLRVG-------SGGGDGGGTTPFRYRRLMGLSRRGWPSCVNPARREEWLCPVEFEAVFAMSFSEFRALPSWKRVALKRELLLF 687
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BLAST of mRNA_H-elongata_contig46453.11739.1 vs. uniprot
Match: A0A103XQ74_CYNCS (Gelsolin domain-containing protein n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103XQ74_CYNCS)

HSP 1 Score: 52.8 bits (125), Expect = 7.520e-5
Identity = 27/62 (43.55%), Postives = 37/62 (59.68%), Query Frame = 0 
Query:  117 TPYRYRRLVGVGNCWPAHVQSSRRERWLAPAEFEAVFEMSFEAFENLPRWKQVSLKQEVCLF 178
            T Y Y +L          +   +RE +L+P EFEA+F+M+ EAF  LPRWKQ   K++V LF
Sbjct:  534 TSYSYEQLNTKSKNPITGIDYKKREAYLSPEEFEAIFKMTKEAFYQLPRWKQDQNKKKVDLF 595
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BLAST of mRNA_H-elongata_contig46453.11739.1 vs. uniprot
Match: UPI000D62429B (villin-3-like n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D62429B)

HSP 1 Score: 52.8 bits (125), Expect = 8.150e-5
Identity = 27/62 (43.55%), Postives = 37/62 (59.68%), Query Frame = 0 
Query:  117 TPYRYRRLVGVGNCWPAHVQSSRRERWLAPAEFEAVFEMSFEAFENLPRWKQVSLKQEVCLF 178
            T Y Y +L          +   +RE +L+P EFEA+F+M+ EAF  LPRWKQ   K++V LF
Sbjct:  912 TSYSYEQLNTKSKNPITGIDYKKREAYLSPEEFEAIFKMTKEAFYQLPRWKQDQNKKKVDLF 973
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46453.11739.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LHW2_ECTSI7.310e-1747.42HP domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5L198_9PHAE3.870e-1646.39HP domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A103XQ74_CYNCS7.520e-543.55Gelsolin domain-containing protein n=1 Tax=Cynara ... [more]
UPI000D62429B8.150e-543.55villin-3-like n=1 Tax=Cynara cardunculus var. scol... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003128Villin headpieceSMARTSM00153VHP_1coord: 143..178
e-value: 1.8E-9
score: 47.5
IPR003128Villin headpiecePFAMPF02209VHPcoord: 144..178
e-value: 1.2E-12
score: 47.7
IPR003128Villin headpiecePROSITEPS51089HPcoord: 113..178
score: 15.181
IPR036886Villin headpiece domain superfamilyGENE3D1.10.950.10coord: 116..178
e-value: 1.5E-15
score: 58.7
IPR036886Villin headpiece domain superfamilySUPERFAMILY47050VHP, Villin headpiece domaincoord: 117..178

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46453contigH-elongata_contig46453:2338..2874 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46453.11739.1mRNA_H-elongata_contig46453.11739.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig46453 2176..2939 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig46453.11739.1 ID=prot_H-elongata_contig46453.11739.1|Name=mRNA_H-elongata_contig46453.11739.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp
MPVYCYIRSYAGLRLAPFEGGGSCRGVDVERADLLIEVFGTDDPPIGLND
ASRIVGPAARIAALPPVEQARLVQIDRWSSEVGDGFYGSNVSGEALVRVG
WRKCSSRARGAQAGDRTPYRYRRLVGVGNCWPAHVQSSRRERWLAPAEFE
AVFEMSFEAFENLPRWKQVSLKQEVCLF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003128Villin_headpiece
IPR036886Villin_headpiece_dom_sf