mRNA_H-elongata_contig46453.11739.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig46453.11739.1
Unique NamemRNA_H-elongata_contig46453.11739.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig46453.11739.1 vs. uniprot
Match: D8LHW2_ECTSI (HP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHW2_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 6.480e-16
Identity = 46/97 (47.42%), Postives = 58/97 (59.79%), Query Frame = 1 
Query:  409 GDGFYGSNVSGEALVRVGWRKCSSRARGAQAGDRTPYRYRRLVGVGNC-WPAHVQSSRRERWLAPAEFEAVFEMSFEAFENLPRWKQVSLKQEVCLF 696
            GDG      +   L+RVG       + G   G  TP+RYRRL+G+    WP+ V  +RRE WL P EFEAVF MSF  F  LP WK+V+LK+E+ LF
Sbjct:  240 GDGNPARASAEPPLLRVG-------SGGGDGGGTTPFRYRRLMGLSRRGWPSCVNPARREEWLCPVEFEAVFAMSFSEFRALPSWKRVALKRELLLF 329
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BLAST of mRNA_H-elongata_contig46453.11739.1 vs. uniprot
Match: A0A6H5L198_9PHAE (HP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L198_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 3.690e-15
Identity = 45/97 (46.39%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:  409 GDGFYGSNVSGEALVRVGWRKCSSRARGAQAGDRTPYRYRRLVGVGNC-WPAHVQSSRRERWLAPAEFEAVFEMSFEAFENLPRWKQVSLKQEVCLF 696
            GDG      +    +RVG       + G   G  TP+RYRRL+G+    WP+ V  +RRE WL P EFEAVF MSF  F  LP WK+V+LK+E+ LF
Sbjct:  598 GDGTSSRASAEPPFLRVG-------SGGGDGGGTTPFRYRRLMGLSRRGWPSCVNPARREEWLCPVEFEAVFAMSFSEFRALPSWKRVALKRELLLF 687
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46453.11739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHW2_ECTSI6.480e-1647.42HP domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5L198_9PHAE3.690e-1546.39HP domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46453contigH-elongata_contig46453:2176..2939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionVillin/Gelsolin
Ec32 orthologEc-18_000720.1
Exons1
Model size764
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46453.11739.1prot_H-elongata_contig46453.11739.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig46453 2338..2874 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930769.4578574-UTR-H-elongata_contig46453:2175..23371622930769.4578574-UTR-H-elongata_contig46453:2175..2337Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46453 2176..2337 +
1691679561.9621694-UTR-H-elongata_contig46453:2175..23371691679561.9621694-UTR-H-elongata_contig46453:2175..2337Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46453 2176..2337 +
1622930769.4959364-UTR-H-elongata_contig46453:2874..29391622930769.4959364-UTR-H-elongata_contig46453:2874..2939Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46453 2875..2939 +
1691679561.9803152-UTR-H-elongata_contig46453:2874..29391691679561.9803152-UTR-H-elongata_contig46453:2874..2939Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig46453 2875..2939 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930769.4717574-CDS-H-elongata_contig46453:2337..28741622930769.4717574-CDS-H-elongata_contig46453:2337..2874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46453 2338..2874 +
1691679561.972298-CDS-H-elongata_contig46453:2337..28741691679561.972298-CDS-H-elongata_contig46453:2337..2874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig46453 2338..2874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig46453.11739.1

>prot_H-elongata_contig46453.11739.1 ID=prot_H-elongata_contig46453.11739.1|Name=mRNA_H-elongata_contig46453.11739.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp
MPVYCYIRSYAGLRLAPFEGGGSCRGVDVERADLLIEVFGTDDPPIGLND
ASRIVGPAARIAALPPVEQARLVQIDRWSSEVGDGFYGSNVSGEALVRVG
WRKCSSRARGAQAGDRTPYRYRRLVGVGNCWPAHVQSSRRERWLAPAEFE
AVFEMSFEAFENLPRWKQVSLKQEVCLF*
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mRNA from alignment at H-elongata_contig46453:2176..2939+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig46453.11739.1 ID=mRNA_H-elongata_contig46453.11739.1|Name=mRNA_H-elongata_contig46453.11739.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=764bp|location=Sequence derived from alignment at H-elongata_contig46453:2176..2939+ (Himanthalia elongata Himel1 dioecious)
ATCGATGGAGAAGAAGAGTGGCACGCGGAGGTAAGGTCATCGAAAACACT
GCCTCCGTCGCCTTTCATCTCCTGCTCCTCTTCCTCGGATCCAGACGGCC
CCTACGGGGAAGCCCCGAGCGTCGGCGCGGTCGAAGATGAGGGTGGATAC
GTCGACGCGAGTATGCCGGTCTATTGTTATATCAGAAGCTACGCGGGTCT
CCGGCTCGCGCCGTTCGAAGGAGGAGGTTCCTGCCGTGGAGTGGACGTGG
AGAGGGCGGATTTGCTAATTGAGGTGTTCGGGACCGACGATCCCCCGATC
GGGCTCAACGACGCGTCGAGGATTGTGGGCCCCGCCGCCCGAATCGCTGC
GCTGCCGCCGGTTGAGCAAGCTCGACTCGTCCAGATCGACAGATGGTCGT
CAGAAGTAGGCGACGGTTTCTACGGGAGTAATGTTTCTGGTGAAGCACTG
GTGAGGGTCGGCTGGAGGAAATGTTCTTCAAGGGCGCGGGGAGCACAGGC
CGGAGACAGAACCCCGTATCGCTACCGGCGCTTAGTTGGAGTCGGGAACT
GCTGGCCGGCCCACGTGCAGTCATCACGCCGCGAAAGATGGCTGGCGCCC
GCCGAGTTCGAGGCGGTTTTTGAGATGAGCTTCGAGGCGTTTGAAAATTT
GCCACGGTGGAAGCAGGTCTCTCTGAAGCAGGAGGTCTGCTTGTTCTAAA
CAAGACTTTTTTCTCCCCTCGACTGTTTTTGGAATACATACTTGCTCTGC
CGATTACTGAGGCC
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Coding sequence (CDS) from alignment at H-elongata_contig46453:2176..2939+

>mRNA_H-elongata_contig46453.11739.1 ID=mRNA_H-elongata_contig46453.11739.1|Name=mRNA_H-elongata_contig46453.11739.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig46453:2176..2939+ (Himanthalia elongata Himel1 dioecious)
ATGCCGGTCTATTGTTATATCAGAAGCTACGCGGGTCTCCGGCTCGCGCC
GTTCGAAGGAGGAGGTTCCTGCCGTGGAGTGGACGTGGAGAGGGCGGATT
TGCTAATTGAGGTGTTCGGGACCGACGATCCCCCGATCGGGCTCAACGAC
GCGTCGAGGATTGTGGGCCCCGCCGCCCGAATCGCTGCGCTGCCGCCGGT
TGAGCAAGCTCGACTCGTCCAGATCGACAGATGGTCGTCAGAAGTAGGCG
ACGGTTTCTACGGGAGTAATGTTTCTGGTGAAGCACTGGTGAGGGTCGGC
TGGAGGAAATGTTCTTCAAGGGCGCGGGGAGCACAGGCCGGAGACAGAAC
CCCGTATCGCTACCGGCGCTTAGTTGGAGTCGGGAACTGCTGGCCGGCCC
ACGTGCAGTCATCACGCCGCGAAAGATGGCTGGCGCCCGCCGAGTTCGAG
GCGGTTTTTGAGATGAGCTTCGAGGCGTTTGAAAATTTGCCACGGTGGAA
GCAGGTCTCTCTGAAGCAGGAGGTCTGCTTGTTCTAAATGCCGGTCTATT
GTTATATCAGAAGCTACGCGGGTCTCCGGCTCGCGCCGTTCGAAGGAGGA
GGTTCCTGCCGTGGAGTGGACGTGGAGAGGGCGGATTTGCTAATTGAGGT
GTTCGGGACCGACGATCCCCCGATCGGGCTCAACGACGCGTCGAGGATTG
TGGGCCCCGCCGCCCGAATCGCTGCGCTGCCGCCGGTTGAGCAAGCTCGA
CTCGTCCAGATCGACAGATGGTCGTCAGAAGTAGGCGACGGTTTCTACGG
GAGTAATGTTTCTGGTGAAGCACTGGTGAGGGTCGGCTGGAGGAAATGTT
CTTCAAGGGCGCGGGGAGCACAGGCCGGAGACAGAACCCCGTATCGCTAC
CGGCGCTTAGTTGGAGTCGGGAACTGCTGGCCGGCCCACGTGCAGTCATC
ACGCCGCGAAAGATGGCTGGCGCCCGCCGAGTTCGAGGCGGTTTTTGAGA
TGAGCTTCGAGGCGTTTGAAAATTTGCCACGGTGGAAGCAGGTCTCTCTG
AAGCAGGAGGTCTGCTTGTTCTAA
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