mRNA_H-elongata_contig114695.1167.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig114695.1167.1
Unique NamemRNA_H-elongata_contig114695.1167.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig114695.1167.1 vs. uniprot
Match: D8LBG4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBG4_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 2.210e-58
Identity = 100/118 (84.75%), Postives = 107/118 (90.68%), Query Frame = 3
Query:  282 MDRGRRAMPVQNKACYERHVQKCQDNHRQRLAKMKPTVDCHPPSSMR-TTLKTNAKKQKIMEDRYAQIERDNRLLLEKMSQIMRKGGLDNYNNNTKYSKSLNKGARKKELQHITRENQ 632
            MDRGRRAMPVQNKACYERHV+KCQDNHR RLAKMKPT+DCH PSSMR    KTNAKKQ+IMEDRYAQIERDNRLLLEKMS IMRKGG+DN+N+ +KYSKSLNKGARKKEL  IT ENQ
Sbjct:    1 MDRGRRAMPVQNKACYERHVKKCQDNHRDRLAKMKPTIDCHAPSSMRKVATKTNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDNHNSTSKYSKSLNKGARKKELHKITTENQ 118          
BLAST of mRNA_H-elongata_contig114695.1167.1 vs. uniprot
Match: A0A836CD52_9STRA (KIAA1430-like protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD52_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.740e-36
Identity = 74/120 (61.67%), Postives = 91/120 (75.83%), Query Frame = 3
Query:  282 MDRGRRAMPVQNKACYERHVQKCQDNHRQRLAKMKPTVDCHPPSSMRTTLKTNAKKQKIMEDRYAQIERDNRLLLEKMSQIMRKGGL----DNYNNNTKYSKSLNKGARKKELQHITREN 629
            MDRGRRAMP  NKAC+ERHV+KCQD HRQ+L  +K T+D  PP ++R    TNAKKQ++MEDRYAQIERDNR+LLEKMS IMR        ++     +Y+KSLN+ +RK+ELQ ITREN
Sbjct:    1 MDRGRRAMPTGNKACHERHVRKCQDLHRQQLTSIKSTIDNKPPKTLRAVAGTNAKKQQLMEDRYAQIERDNRILLEKMSTIMRSRPTVALAESVEAQARYAKSLNRESRKRELQRITREN 120          
BLAST of mRNA_H-elongata_contig114695.1167.1 vs. uniprot
Match: A0A7S2V2P0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2P0_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.250e-33
Identity = 71/117 (60.68%), Postives = 88/117 (75.21%), Query Frame = 3
Query:  282 MDRGRRAMPVQNKACYERHVQKCQDNHRQRLAKMKPTVDCHPPSSMRTTLKTNAKKQKIMEDRYAQIERDNRLLLEKMSQIMRKGGLDNYNNNTKYSKSLNKGARKKELQHITRENQ 632
            MDRGRRAMPV NK C +R+++ CQ+ HR++LA MK  VD  PP      L+ N KK+++MEDR+A IERDNR+LLEKMS IMR+   DN N +T Y+ SLNK ARK+ELQ ITRENQ
Sbjct:    1 MDRGRRAMPVGNKTCNDRYIKMCQEKHRKKLADMKCRVDNKPPDKP-AHLRRNLKKEQLMEDRFATIERDNRILLEKMSYIMRRNQFDNTNESTAYAHSLNKEARKRELQKITRENQ 116          
BLAST of mRNA_H-elongata_contig114695.1167.1 vs. uniprot
Match: A0A7S3USY4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USY4_HETAK)

HSP 1 Score: 122 bits (306), Expect = 3.020e-31
Identity = 70/117 (59.83%), Postives = 87/117 (74.36%), Query Frame = 3
Query:  282 MDRGRRAMPVQNKACYERHVQKCQDNHRQRLAKMKPTVDCHPPSSMRTTLKTNAKKQKIMEDRYAQIERDNRLLLEKMSQIMRKGGLDNYNNNTKYSKSLNKGARKKELQHITRENQ 632
            MDRGRRAMPV NK C +R VQ+ Q  HR++LA+MK  +D   P      L+ N KK+++MEDR+A IERDNR+LLEKMS IMR+   DN N +T+Y+ SLNK ARK+ELQ ITRENQ
Sbjct:    1 MDRGRRAMPVGNKLCNQRAVQQAQQKHRKKLAEMKCRIDNTAPDRP-AHLRRNLKKEQLMEDRFATIERDNRILLEKMSYIMRRNQFDNVNESTQYAHSLNKEARKRELQRITRENQ 116          
BLAST of mRNA_H-elongata_contig114695.1167.1 vs. uniprot
Match: A0A7S2WX22_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX22_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.030e-26
Identity = 61/118 (51.69%), Postives = 87/118 (73.73%), Query Frame = 3
Query:  282 MDRGRRAMPVQNKACYERHVQKCQDNHRQRLAKMKPTVDCHPPSSMRTTLKTNAKKQKIMEDRYAQIERDNRLLLEKMSQIMRKGGLDNYNN-NTKYSKSLNKGARKKELQHITRENQ 632
            MDR R+ MP+ NKACY+RHV+K Q+ HRQRLA MK ++DC PP      L+ N KK+++ME+RYA+IE+DNRLLLE+MS I++  G+D Y   + K + SL +  R++++  ITR+NQ
Sbjct:    1 MDRFRKVMPMGNKACYDRHVKKNQERHRQRLASMKCSIDCAPPRRF-PHLERNQKKEQLMEERYAEIEKDNRLLLERMSYILKCKGMDCYATPHMKLAHSLTRDERRRDMDRITRDNQ 117          
BLAST of mRNA_H-elongata_contig114695.1167.1 vs. uniprot
Match: F0Y0R8_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0R8_AURAN)

HSP 1 Score: 107 bits (266), Expect = 5.190e-26
Identity = 60/109 (55.05%), Postives = 81/109 (74.31%), Query Frame = 3
Query:  306 PVQNKACYERHVQKCQDNHRQRLAKMKPTVDCHPPSSMRTTLKTNAKKQKIMEDRYAQIERDNRLLLEKMSQIMRKGGLDNYNNNTKYSKSLNKGARKKELQHITRENQ 632
            P+ NK C+ R V+KCQ+ H+++L +MK ++D H P      L+ N KK+++ME+RYA+IERDNRLLLEKMS IMR   LDN +N  +Y+ SLN+  RK+ELQ ITRENQ
Sbjct:    1 PIGNKQCHARFVKKCQETHKKKLHEMKCSIDNHEPKR-HPHLRKNLKKEQLMEERYAEIERDNRLLLEKMSYIMRHSSLDN-DNQMQYAHSLNREQRKRELQRITRENQ 107          
BLAST of mRNA_H-elongata_contig114695.1167.1 vs. uniprot
Match: K3WRK6_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WRK6_GLOUD)

HSP 1 Score: 107 bits (266), Expect = 1.450e-25
Identity = 63/117 (53.85%), Postives = 82/117 (70.09%), Query Frame = 3
Query:  282 MDRGRRAMPVQNKACYERHVQKCQDNHRQRLAKMKPTVDCHPPSSMRTTLKTNAKKQKIMEDRYAQIERDNRLLLEKMSQIMRKGGLDNYNNNTKYSKSLNKGARKKELQHITRENQ 632
            MDRGR+A+P  NK    ++ QKCQ+ HR +L  +K ++D   P    T LK N KK+++ E+RYA+IER+NR+LLEKMS IM+   LDN N +  YS SLNKG RK+ELQ IT ENQ
Sbjct:    1 MDRGRKAIPTLNKHTDSKYYQKCQEIHRSKLNTIKSSIDNSEPHRP-THLKKNLKKEQMKEERYAEIERENRILLEKMSHIMQNETLDNKNQSIVYSHSLNKGLRKRELQKITSENQ 116          
BLAST of mRNA_H-elongata_contig114695.1167.1 vs. uniprot
Match: A0A7S2P7L5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P7L5_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.560e-25
Identity = 65/117 (55.56%), Postives = 83/117 (70.94%), Query Frame = 3
Query:  282 MDRGRRAMPVQNKACYERHVQKCQDNHRQRLAKMKPTVDCHPPSSMRTTLKTNAKKQKIMEDRYAQIERDNRLLLEKMSQIMR-KGGLDNYNNNTKYSKSLNKGARKKELQHITREN 629
            MDRGR+AMPVQNKAC ERHV+K        L  MK ++D   P  M + LKT AKK  ++E+R  QIE +NRLLLEKMS IMR KG +DN N++++Y +SLNK  RK+EL  IT++N
Sbjct:    1 MDRGRKAMPVQNKACNERHVKKXXXXXXXXLRDMKSSIDNKEPR-MASHLKTKAKKNALVEERLKQIETENRLLLEKMSHIMRCKGSIDNKNSSSQYGRSLNKDQRKRELTRITKQN 116          
BLAST of mRNA_H-elongata_contig114695.1167.1 vs. uniprot
Match: A0A0N7L428_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L428_PLAHL)

HSP 1 Score: 103 bits (258), Expect = 2.140e-24
Identity = 60/117 (51.28%), Postives = 82/117 (70.09%), Query Frame = 3
Query:  282 MDRGRRAMPVQNKACYERHVQKCQDNHRQRLAKMKPTVDCHPPSSMRTTLKTNAKKQKIMEDRYAQIERDNRLLLEKMSQIMRKGGLDNYNNNTKYSKSLNKGARKKELQHITRENQ 632
            MDRGR+A+P  NK    ++ Q+CQ+ HR +L  +K ++D   P    T L+ N KK+++ EDRYA+IER+NR+LLEKM+ IM+   LDN N +  Y+ SLNKG RK+ELQ IT ENQ
Sbjct:    1 MDRGRKAIPTLNKHTDSKYYQRCQEIHRSKLYTIKSSIDNGEPHRP-THLRKNMKKEQMKEDRYAEIERENRILLEKMTMIMQGEKLDNKNQSVAYAHSLNKGRRKRELQRITTENQ 116          
BLAST of mRNA_H-elongata_contig114695.1167.1 vs. uniprot
Match: G5AFG8_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G5AFG8_PHYSP)

HSP 1 Score: 102 bits (254), Expect = 8.420e-24
Identity = 60/117 (51.28%), Postives = 81/117 (69.23%), Query Frame = 3
Query:  282 MDRGRRAMPVQNKACYERHVQKCQDNHRQRLAKMKPTVDCHPPSSMRTTLKTNAKKQKIMEDRYAQIERDNRLLLEKMSQIMRKGGLDNYNNNTKYSKSLNKGARKKELQHITRENQ 632
            MDRGR+A+P  NK    ++ Q+CQ+ HR +L  +K  +D   P    T L+ N K++++ E+RYA+IER+NR+LLEKMS IM+   LDN N +  YS SLNKG RK+ELQ IT ENQ
Sbjct:    1 MDRGRKAIPTLNKHTDSKYYQRCQEIHRNKLYTIKSAIDNSEPHRP-THLRKNLKREQLKEERYAEIERENRILLEKMSTIMQGETLDNKNQSIVYSHSLNKGQRKRELQKITSENQ 116          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114695.1167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBG4_ECTSI2.210e-5884.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CD52_9STRA1.740e-3661.67KIAA1430-like protein-domain-containing protein n=... [more]
A0A7S2V2P0_9STRA1.250e-3360.68Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3USY4_HETAK3.020e-3159.83Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2WX22_9STRA1.030e-2651.69Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0Y0R8_AURAN5.190e-2655.05Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
K3WRK6_GLOUD1.450e-2553.85Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
A0A7S2P7L5_9STRA1.560e-2555.56Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A0N7L428_PLAHL2.140e-2451.28Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
G5AFG8_PHYSP8.420e-2451.28Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig114695contigH-elongata_contig114695:1197..2101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.0
Seed ortholog evalue8e-47
Seed eggNOG ortholog2880.D8LBG4
EggNOG free text desc.KIAA1430 homologue
EggNOG OGs2ANFN@1,2RZE9@2759
Ec32 ortholog descriptionKIAA1430 homologue
Ec32 orthologEc-27_004060.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size632
Cds size351
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig114695.1167.1prot_H-elongata_contig114695.1167.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig114695 1197..1820 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929662.7278128-CDS-H-elongata_contig114695:1196..13671622929662.7278128-CDS-H-elongata_contig114695:1196..1367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114695 1197..1367 -
1691679110.2887065-CDS-H-elongata_contig114695:1196..13671691679110.2887065-CDS-H-elongata_contig114695:1196..1367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114695 1197..1367 -
1622929662.7418742-CDS-H-elongata_contig114695:1640..18201622929662.7418742-CDS-H-elongata_contig114695:1640..1820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114695 1641..1820 -
1691679110.2982295-CDS-H-elongata_contig114695:1640..18201691679110.2982295-CDS-H-elongata_contig114695:1640..1820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig114695 1641..1820 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929662.7804637-UTR-H-elongata_contig114695:1820..21011622929662.7804637-UTR-H-elongata_contig114695:1820..2101Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig114695 1821..2101 -
1691679110.3159606-UTR-H-elongata_contig114695:1820..21011691679110.3159606-UTR-H-elongata_contig114695:1820..2101Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig114695 1821..2101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig114695.1167.1

>prot_H-elongata_contig114695.1167.1 ID=prot_H-elongata_contig114695.1167.1|Name=mRNA_H-elongata_contig114695.1167.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
MDRGRRAMPVQNKACYERHVQKCQDNHRQRLAKMKPTVDCHPPSSMRTTL
KTNAKKQKIMEDRYAQIERDNRLLLEKMSQIMRKGGLDNYNNNTKYSKSL
NKGARKKELQHITRENQ
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mRNA from alignment at H-elongata_contig114695:1197..2101-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig114695.1167.1 ID=mRNA_H-elongata_contig114695.1167.1|Name=mRNA_H-elongata_contig114695.1167.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=905bp|location=Sequence derived from alignment at H-elongata_contig114695:1197..2101- (Himanthalia elongata Himel1 dioecious)
CTTCTGCTAAAAGTGCGACCAACATCAACAACAACAACATCTACGACCCA GAACCGATCTTTTTTTTCTCTACCGACGGAAACTGCCTTGTATAGCGACT AGCGACAAAGACACTCGATTTCCGAAGGCGCCGTATTAATTTTCTGCTCT ATCTACGAAATTGTCATTTAGGTCTTAGCAGTGCGTGGTTTTGGAACTCC TTGACCGTTACGTCAGGAGCATATCCTTCCCGTGGAAACGCGAGTGTCCT AGAGAGCGGGATAACTGGACGCAAAAGGAAGATGGATAGGGGCCGACGCG CCATGCCTGTGCAAAATAAAGCATGTTATGAACGACACGTCCAAAAGTGT CAAGATAATCACAGACAGCGTCTCGCAAAAATGAAACCAACAGTCGATTG TCATCCACCCTCAAGTATGCGAACGACTCTGAAGACCAACGCTAAGAAGC AGAAGATCATGGTGAGGCGACTGGGACATGCTGAGCAATCCAAAATGTAA AGGATTCCATTTTTCTTCAAGTTCGTAATGCACCAGACTCATGTGGATAG CCTTTGGCCTAGAAACTGACTGGTGGGCATCGCAAAATCTCCGATTGTAA ACGCTGAATATGTAACGATACTTCTTCCTCTTTCAAAAGGCTTTCAAAAG GCAAAAATAATACCAGTATATAACAACGAGTCATAATCCGTTATGGAGTC GTTCACACGTGTCCGCGCTTTTGGGCTGCTTCAGGAAGACCGCTATGCTC AGATCGAGCGCGACAATCGACTGCTGTTGGAGAAAATGTCTCAGATCATG CGCAAGGGGGGATTGGATAACTACAACAACAATACAAAATACTCCAAGTC ACTCAACAAGGGGGCTCGTAAAAAGGAACTACAACATATTACGAGGGAGA ATCAG
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Coding sequence (CDS) from alignment at H-elongata_contig114695:1197..2101-

>mRNA_H-elongata_contig114695.1167.1 ID=mRNA_H-elongata_contig114695.1167.1|Name=mRNA_H-elongata_contig114695.1167.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig114695:1197..2101- (Himanthalia elongata Himel1 dioecious)
ATGGATAGGGGCCGACGCGCCATGCCTGTGCAAAATAAAGCATGTTATGA
ACGACACGTCCAAAAGTGTCAAGATAATCACAGACAGCGTCTCGCAAAAA
TGAAACCAACAGTCGATTGTCATCCACCCTCAAGTATGCGAACGACTCTG
AAGACCAACGCTAAGAAGCAGAAGATCATGATGGATAGGGGCCGACGCGC
CATGCCTGTGCAAAATAAAGCATGTTATGAACGACACGTCCAAAAGTGTC
AAGATAATCACAGACAGCGTCTCGCAAAAATGAAACCAACAGTCGATTGT
CATCCACCCTCAAGTATGCGAACGACTCTGAAGACCAACGCTAAGAAGCA
GAAGATCATGGAAGACCGCTATGCTCAGATCGAGCGCGACAATCGACTGC
TGTTGGAGAAAATGTCTCAGATCATGCGCAAGGGGGGATTGGATAACTAC
AACAACAATACAAAATACTCCAAGTCACTCAACAAGGGGGCTCGTAAAAA
GGAACTACAACATATTACGAGGGAGAATCAGGAAGACCGCTATGCTCAGA
TCGAGCGCGACAATCGACTGCTGTTGGAGAAAATGTCTCAGATCATGCGC
AAGGGGGGATTGGATAACTACAACAACAATACAAAATACTCCAAGTCACT
CAACAAGGGGGCTCGTAAAAAGGAACTACAACATATTACGAGGGAGAATC
AG
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