mRNA_H-elongata_contig114695.1167.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig114695.1167.1 vs. uniprot
Match: D8LBG4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBG4_ECTSI) HSP 1 Score: 190 bits (483), Expect = 2.210e-58 Identity = 100/118 (84.75%), Postives = 107/118 (90.68%), Query Frame = 3
Query: 282 MDRGRRAMPVQNKACYERHVQKCQDNHRQRLAKMKPTVDCHPPSSMR-TTLKTNAKKQKIMEDRYAQIERDNRLLLEKMSQIMRKGGLDNYNNNTKYSKSLNKGARKKELQHITRENQ 632
MDRGRRAMPVQNKACYERHV+KCQDNHR RLAKMKPT+DCH PSSMR KTNAKKQ+IMEDRYAQIERDNRLLLEKMS IMRKGG+DN+N+ +KYSKSLNKGARKKEL IT ENQ
Sbjct: 1 MDRGRRAMPVQNKACYERHVKKCQDNHRDRLAKMKPTIDCHAPSSMRKVATKTNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDNHNSTSKYSKSLNKGARKKELHKITTENQ 118
BLAST of mRNA_H-elongata_contig114695.1167.1 vs. uniprot
Match: A0A836CD52_9STRA (KIAA1430-like protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD52_9STRA) HSP 1 Score: 135 bits (340), Expect = 1.740e-36 Identity = 74/120 (61.67%), Postives = 91/120 (75.83%), Query Frame = 3
Query: 282 MDRGRRAMPVQNKACYERHVQKCQDNHRQRLAKMKPTVDCHPPSSMRTTLKTNAKKQKIMEDRYAQIERDNRLLLEKMSQIMRKGGL----DNYNNNTKYSKSLNKGARKKELQHITREN 629
MDRGRRAMP NKAC+ERHV+KCQD HRQ+L +K T+D PP ++R TNAKKQ++MEDRYAQIERDNR+LLEKMS IMR ++ +Y+KSLN+ +RK+ELQ ITREN
Sbjct: 1 MDRGRRAMPTGNKACHERHVRKCQDLHRQQLTSIKSTIDNKPPKTLRAVAGTNAKKQQLMEDRYAQIERDNRILLEKMSTIMRSRPTVALAESVEAQARYAKSLNRESRKRELQRITREN 120
BLAST of mRNA_H-elongata_contig114695.1167.1 vs. uniprot
Match: A0A7S2V2P0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2P0_9STRA) HSP 1 Score: 127 bits (320), Expect = 1.250e-33 Identity = 71/117 (60.68%), Postives = 88/117 (75.21%), Query Frame = 3
Query: 282 MDRGRRAMPVQNKACYERHVQKCQDNHRQRLAKMKPTVDCHPPSSMRTTLKTNAKKQKIMEDRYAQIERDNRLLLEKMSQIMRKGGLDNYNNNTKYSKSLNKGARKKELQHITRENQ 632
MDRGRRAMPV NK C +R+++ CQ+ HR++LA MK VD PP L+ N KK+++MEDR+A IERDNR+LLEKMS IMR+ DN N +T Y+ SLNK ARK+ELQ ITRENQ
Sbjct: 1 MDRGRRAMPVGNKTCNDRYIKMCQEKHRKKLADMKCRVDNKPPDKP-AHLRRNLKKEQLMEDRFATIERDNRILLEKMSYIMRRNQFDNTNESTAYAHSLNKEARKRELQKITRENQ 116
BLAST of mRNA_H-elongata_contig114695.1167.1 vs. uniprot
Match: A0A7S3USY4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USY4_HETAK) HSP 1 Score: 122 bits (306), Expect = 3.020e-31 Identity = 70/117 (59.83%), Postives = 87/117 (74.36%), Query Frame = 3
Query: 282 MDRGRRAMPVQNKACYERHVQKCQDNHRQRLAKMKPTVDCHPPSSMRTTLKTNAKKQKIMEDRYAQIERDNRLLLEKMSQIMRKGGLDNYNNNTKYSKSLNKGARKKELQHITRENQ 632
MDRGRRAMPV NK C +R VQ+ Q HR++LA+MK +D P L+ N KK+++MEDR+A IERDNR+LLEKMS IMR+ DN N +T+Y+ SLNK ARK+ELQ ITRENQ
Sbjct: 1 MDRGRRAMPVGNKLCNQRAVQQAQQKHRKKLAEMKCRIDNTAPDRP-AHLRRNLKKEQLMEDRFATIERDNRILLEKMSYIMRRNQFDNVNESTQYAHSLNKEARKRELQRITRENQ 116
BLAST of mRNA_H-elongata_contig114695.1167.1 vs. uniprot
Match: A0A7S2WX22_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX22_9STRA) HSP 1 Score: 109 bits (273), Expect = 1.030e-26 Identity = 61/118 (51.69%), Postives = 87/118 (73.73%), Query Frame = 3
Query: 282 MDRGRRAMPVQNKACYERHVQKCQDNHRQRLAKMKPTVDCHPPSSMRTTLKTNAKKQKIMEDRYAQIERDNRLLLEKMSQIMRKGGLDNYNN-NTKYSKSLNKGARKKELQHITRENQ 632
MDR R+ MP+ NKACY+RHV+K Q+ HRQRLA MK ++DC PP L+ N KK+++ME+RYA+IE+DNRLLLE+MS I++ G+D Y + K + SL + R++++ ITR+NQ
Sbjct: 1 MDRFRKVMPMGNKACYDRHVKKNQERHRQRLASMKCSIDCAPPRRF-PHLERNQKKEQLMEERYAEIEKDNRLLLERMSYILKCKGMDCYATPHMKLAHSLTRDERRRDMDRITRDNQ 117
BLAST of mRNA_H-elongata_contig114695.1167.1 vs. uniprot
Match: F0Y0R8_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0R8_AURAN) HSP 1 Score: 107 bits (266), Expect = 5.190e-26 Identity = 60/109 (55.05%), Postives = 81/109 (74.31%), Query Frame = 3
Query: 306 PVQNKACYERHVQKCQDNHRQRLAKMKPTVDCHPPSSMRTTLKTNAKKQKIMEDRYAQIERDNRLLLEKMSQIMRKGGLDNYNNNTKYSKSLNKGARKKELQHITRENQ 632
P+ NK C+ R V+KCQ+ H+++L +MK ++D H P L+ N KK+++ME+RYA+IERDNRLLLEKMS IMR LDN +N +Y+ SLN+ RK+ELQ ITRENQ
Sbjct: 1 PIGNKQCHARFVKKCQETHKKKLHEMKCSIDNHEPKR-HPHLRKNLKKEQLMEERYAEIERDNRLLLEKMSYIMRHSSLDN-DNQMQYAHSLNREQRKRELQRITRENQ 107
BLAST of mRNA_H-elongata_contig114695.1167.1 vs. uniprot
Match: K3WRK6_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WRK6_GLOUD) HSP 1 Score: 107 bits (266), Expect = 1.450e-25 Identity = 63/117 (53.85%), Postives = 82/117 (70.09%), Query Frame = 3
Query: 282 MDRGRRAMPVQNKACYERHVQKCQDNHRQRLAKMKPTVDCHPPSSMRTTLKTNAKKQKIMEDRYAQIERDNRLLLEKMSQIMRKGGLDNYNNNTKYSKSLNKGARKKELQHITRENQ 632
MDRGR+A+P NK ++ QKCQ+ HR +L +K ++D P T LK N KK+++ E+RYA+IER+NR+LLEKMS IM+ LDN N + YS SLNKG RK+ELQ IT ENQ
Sbjct: 1 MDRGRKAIPTLNKHTDSKYYQKCQEIHRSKLNTIKSSIDNSEPHRP-THLKKNLKKEQMKEERYAEIERENRILLEKMSHIMQNETLDNKNQSIVYSHSLNKGLRKRELQKITSENQ 116
BLAST of mRNA_H-elongata_contig114695.1167.1 vs. uniprot
Match: A0A7S2P7L5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P7L5_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.560e-25 Identity = 65/117 (55.56%), Postives = 83/117 (70.94%), Query Frame = 3
Query: 282 MDRGRRAMPVQNKACYERHVQKCQDNHRQRLAKMKPTVDCHPPSSMRTTLKTNAKKQKIMEDRYAQIERDNRLLLEKMSQIMR-KGGLDNYNNNTKYSKSLNKGARKKELQHITREN 629
MDRGR+AMPVQNKAC ERHV+K L MK ++D P M + LKT AKK ++E+R QIE +NRLLLEKMS IMR KG +DN N++++Y +SLNK RK+EL IT++N
Sbjct: 1 MDRGRKAMPVQNKACNERHVKKXXXXXXXXLRDMKSSIDNKEPR-MASHLKTKAKKNALVEERLKQIETENRLLLEKMSHIMRCKGSIDNKNSSSQYGRSLNKDQRKRELTRITKQN 116
BLAST of mRNA_H-elongata_contig114695.1167.1 vs. uniprot
Match: A0A0N7L428_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L428_PLAHL) HSP 1 Score: 103 bits (258), Expect = 2.140e-24 Identity = 60/117 (51.28%), Postives = 82/117 (70.09%), Query Frame = 3
Query: 282 MDRGRRAMPVQNKACYERHVQKCQDNHRQRLAKMKPTVDCHPPSSMRTTLKTNAKKQKIMEDRYAQIERDNRLLLEKMSQIMRKGGLDNYNNNTKYSKSLNKGARKKELQHITRENQ 632
MDRGR+A+P NK ++ Q+CQ+ HR +L +K ++D P T L+ N KK+++ EDRYA+IER+NR+LLEKM+ IM+ LDN N + Y+ SLNKG RK+ELQ IT ENQ
Sbjct: 1 MDRGRKAIPTLNKHTDSKYYQRCQEIHRSKLYTIKSSIDNGEPHRP-THLRKNMKKEQMKEDRYAEIERENRILLEKMTMIMQGEKLDNKNQSVAYAHSLNKGRRKRELQRITTENQ 116
BLAST of mRNA_H-elongata_contig114695.1167.1 vs. uniprot
Match: G5AFG8_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G5AFG8_PHYSP) HSP 1 Score: 102 bits (254), Expect = 8.420e-24 Identity = 60/117 (51.28%), Postives = 81/117 (69.23%), Query Frame = 3
Query: 282 MDRGRRAMPVQNKACYERHVQKCQDNHRQRLAKMKPTVDCHPPSSMRTTLKTNAKKQKIMEDRYAQIERDNRLLLEKMSQIMRKGGLDNYNNNTKYSKSLNKGARKKELQHITRENQ 632
MDRGR+A+P NK ++ Q+CQ+ HR +L +K +D P T L+ N K++++ E+RYA+IER+NR+LLEKMS IM+ LDN N + YS SLNKG RK+ELQ IT ENQ
Sbjct: 1 MDRGRKAIPTLNKHTDSKYYQRCQEIHRNKLYTIKSAIDNSEPHRP-THLRKNLKREQLKEERYAEIERENRILLEKMSTIMQGETLDNKNQSIVYSHSLNKGQRKRELQKITSENQ 116 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114695.1167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig114695.1167.1 >prot_H-elongata_contig114695.1167.1 ID=prot_H-elongata_contig114695.1167.1|Name=mRNA_H-elongata_contig114695.1167.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp MDRGRRAMPVQNKACYERHVQKCQDNHRQRLAKMKPTVDCHPPSSMRTTLback to top mRNA from alignment at H-elongata_contig114695:1197..2101- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig114695.1167.1 ID=mRNA_H-elongata_contig114695.1167.1|Name=mRNA_H-elongata_contig114695.1167.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=905bp|location=Sequence derived from alignment at H-elongata_contig114695:1197..2101- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig114695:1197..2101- >mRNA_H-elongata_contig114695.1167.1 ID=mRNA_H-elongata_contig114695.1167.1|Name=mRNA_H-elongata_contig114695.1167.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig114695:1197..2101- (Himanthalia elongata Himel1 dioecious)back to top |