mRNA_H-elongata_contig114400.1148.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig114400.1148.1 vs. uniprot
Match: D7FMW6_ECTSI (Endothelial monocyte-activating polypeptide II pro-EMAP II family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW6_ECTSI) HSP 1 Score: 303 bits (775), Expect = 1.190e-100 Identity = 177/265 (66.79%), Postives = 200/265 (75.47%), Query Frame = 1
Query: 1 MRAVSSLLSFSALATSSAFVIQG-HAIRGSTGR---ARALRYISRA*KSSPSRV-VALRWPVPGAANGMSCTARMMSDTTTIAEAPGVEKDPAGELTELARLEIRVGTILEITRHPDADSLYMEKVDIGAGVEEEPRTIVSGLVSFCEKSDLLGRNVVVLCNLKPVSMKGVLSAGMLLCCSNGKHTEVKPLCPPEGVPLRELVTSEGHLSSPVEAGNRAGKVWKKVSKTLEVDDTKVARFTGEMLPDPFMTSTGAITSPLLGPIS 780
MRAVSSL+S SALATSSAFV G +AIR STG+ A ALR +SRA +S R ALR P T MMSD + E P GELTELARLEIR+G I+EI RHPDADSLY+EKVD+G G EE PRTIVSGLV+FCE+SDLLGR+VVVLCNLKPV+MKGV SAGMLLC SN H++V+PLCPPEGVPL ELVT +GHL SPV+AGNRAGK WK+ SKTL VDD++ A+FTGE LP FMTS G ITSPL G IS
Sbjct: 1 MRAVSSLVSLSALATSSAFVAPGGNAIRASTGKTNAAMALRCLSRARLTSSVRPQAALRRPTAVR------TMMMMSDAA-VTEEEAAPAAPTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGQGEEEGPRTIVSGLVNFCEESDLLGRDVVVLCNLKPVNMKGVTSAGMLLCSSNEDHSKVEPLCPPEGVPLGELVTFDGHLPSPVDAGNRAGKAWKRASKTLAVDDSEEAKFTGEKLPATFMTSKGPITSPLPGSIS 258
BLAST of mRNA_H-elongata_contig114400.1148.1 vs. uniprot
Match: A0A835YNH3_9STRA (Endothelial monocyte-activating polypeptide II pro-EMAP II family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH3_9STRA) HSP 1 Score: 226 bits (577), Expect = 7.940e-71 Identity = 121/196 (61.73%), Postives = 144/196 (73.47%), Query Frame = 1
Query: 202 ARMMSDTTTIAEAPGVEKDPA---GELTELARLEIRVGTILEITRHPDADSLYMEKVDIGAGVEEEPRTIVSGLVSFCEKSDLLGRNVVVLCNLKPVSMKGVLSAGMLLCCSNGKHTEVKPLCPPEGVPLRELVTSEGHLSSPVEAGNRAGKVWKKVSKTLEVDDTKVARFTGEMLPDPFMTSTGAITSPLLGPIS 780
A MS + E +PA G+LTELARLE+RVG I+EI RHPDAD LY+EK+DIG PRTIVSGLV++C ++DLL R+VV+L NLKPV+M+GV SAGM+LC SN HT+V PL PPEG PL ELVT EGHL++PVEAGNRA K WKKV+KT+ V + VARFT E LP F TS G +TSPL G IS
Sbjct: 51 AMQMSTEASTEEGAAAAAEPAAPVGQLTELARLEMRVGRIVEIGRHPDADGLYVEKIDIGEPAG--PRTIVSGLVAYCSEADLLNRDVVILANLKPVNMRGVESAGMVLCSSNADHTQVAPLVPPEGTPLGELVTFEGHLAAPVEAGNRAVKAWKKVAKTVAVGEDGVARFTDEALPAAFATSKGVVTSPLPGNIS 244
BLAST of mRNA_H-elongata_contig114400.1148.1 vs. uniprot
Match: W7U6C4_9STRA (Endothelial monocyte-activating polypeptide ii pro-emap ii family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6C4_9STRA) HSP 1 Score: 184 bits (466), Expect = 1.120e-52 Identity = 98/178 (55.06%), Postives = 125/178 (70.22%), Query Frame = 1
Query: 247 VEKDPAGELTELARLEIRVGTILEITRHPDADSLYMEKVDIGAGVEEEPRTIVSGLVSFCEKSDLLGRNVVVLCNLKPVSMKGVLSAGMLLCCSNGKHTEVKPLCPPEGVPLRELVTSEGHLSSPVEAGNRAGKVWKKVSKTLEVDDTKVARFTGEMLPDPFMTSTGAITSPLLGPIS 780
V + P GELTEL+RLEIR G ILEI+RHP+AD LY+EK+D+G + PRTIVSGLV + + +LLGR VVVL NLKP ++KG+ S GMLLC SN HT VKPL PP GV L EL+T EGH ++P GNRAGK + +V++ L + +A + G PFMTS G +T+ + G IS
Sbjct: 189 VVEAPKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEA--DGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGI----PFMTSKGPVTTGMAGSIS 360
BLAST of mRNA_H-elongata_contig114400.1148.1 vs. uniprot
Match: A0A7S2V4I0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4I0_9STRA) HSP 1 Score: 175 bits (444), Expect = 9.430e-51 Identity = 96/174 (55.17%), Postives = 120/174 (68.97%), Query Frame = 1
Query: 259 PAGELTELARLEIRVGTILEITRHPDADSLYMEKVDIGAGVEEEPRTIVSGLVSFCEKSDLLGRNVVVLCNLKPVSMKGVLSAGMLLCCSNGKHTEVKPLCPPEGVPLRELVTSEGHLSSPVEAGNRAGKVWKKVSKTLEVDDTKVARFTGEMLPDPFMTSTGAITSPLLGPIS 780
PAGEL E +RLEIRVG I++++ HPDAD LY+EK+D G E+EPRTIVSGLV + + DLL R+VVVL NLKP +M+G+ S GMLLC SN H++V PL PPE EL+T EG LS P+E NRA K + KV+K L V+D A F G+ PF+T G TS + G IS
Sbjct: 79 PAGELNEFSRLEIRVGKIVDVSVHPDADGLYVEKIDCG---EDEPRTIVSGLVKYLKAEDLLDRSVVVLANLKPRAMRGITSHGMLLCASNEDHSQVVPLSPPESSVPGELITVEGTLSQPLEPCNRASKAFDKVAKDLYVNDDLQATFDGK----PFLTPNGPCTSTMKGAIS 245
BLAST of mRNA_H-elongata_contig114400.1148.1 vs. uniprot
Match: A0A7S0ZE83_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZE83_9RHOD) HSP 1 Score: 174 bits (441), Expect = 1.810e-50 Identity = 90/164 (54.88%), Postives = 114/164 (69.51%), Query Frame = 1
Query: 271 LTELARLEIRVGTILEITRHPDADSLYMEKVDIGAGVEEEPRTIVSGLVSFCEKSDLLGRNVVVLCNLKPVSMKGVLSAGMLLCCSNGKHTEVKPLCPPEGVPLRELVTSEGHLSSPVEAGNRAGKVWKKVSKTLEVDDTKVARFTGEMLPDPFMTSTGAITSP 762
LTEL+RLEIRVG ++E RHPDAD+LY+EKVD+G E+EPRTIVSGLV+F + +L GR V+VLCNLKP +M+G+ S GMLLC SN HT+V PL P + L+T EGH ++P++AGNRA K + KV+ D +ARF PFMT GA SP
Sbjct: 68 LTELSRLEIRVGKVVECERHPDADTLYVEKVDVG---EDEPRTIVSGLVNFMSQEELNGRTVIVLCNLKPRAMRGIKSHGMLLCASNEDHTKVDPLTAPPDAAIGSLITFEGHRAAPMDAGNRASKAFDKVASEFNTDADGIARFNAT----PFMTEAGACYSP 224
BLAST of mRNA_H-elongata_contig114400.1148.1 vs. uniprot
Match: A0A7S0XDL6_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDL6_9STRA) HSP 1 Score: 173 bits (439), Expect = 2.180e-50 Identity = 91/171 (53.22%), Postives = 117/171 (68.42%), Query Frame = 1
Query: 268 ELTELARLEIRVGTILEITRHPDADSLYMEKVDIGAGVEEEPRTIVSGLVSFCEKSDLLGRNVVVLCNLKPVSMKGVLSAGMLLCCSNGKHTEVKPLCPPEGVPLRELVTSEGHLSSPVEAGNRAGKVWKKVSKTLEVDDTKVARFTGEMLPDPFMTSTGAITSPLLGPIS 780
ELTEL+RLEIRVG I+E+ RHP+AD LY+EK+D+G PRTIVSGLV FC LL NV+VLCNLKP ++KG+ S GM+LC ++ T+V PL PP P+ +L+T EGHLS PVE GNRA K + K++ V++ VA + G PF T G +TS L+G IS
Sbjct: 51 ELTELSRLEIRVGKIVEVGRHPEADGLYVEKIDLGEPTG--PRTIVSGLVQFCTVDRLLNNNVIVLCNLKPRALKGITSNGMVLCTTSKDETKVDPLIPPPDAPIGQLITFEGHLSEPVEPGNRATKAFTKIADGFYVNEQGVATYNGI----PFSTPNGPVTSTLIGKIS 215
BLAST of mRNA_H-elongata_contig114400.1148.1 vs. uniprot
Match: A0A7S2R5F0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5F0_9STRA) HSP 1 Score: 173 bits (439), Expect = 4.460e-50 Identity = 89/172 (51.74%), Postives = 122/172 (70.93%), Query Frame = 1
Query: 250 EKDPAGELTELARLEIRVGTILEITRHPDADSLYMEKVDIGAGVEEEPRTIVSGLVSFCEKSDLLGRNVVVLCNLKPVSMKGVLSAGMLLCCSNGKHTEVKPLCPPEGVPLRELVTSEGHLSSPVEAGNRAGKVWKKVSKTLEVDDTKVARFTGEMLPDPFMTSTGAITSPL 765
E P GE+TEL+RLEIRVG ILE+ HP + +++EK+D+G E+EPRTI SGL + ++ DLL ++ +VLCNLKP + GV S GM+LC S+ +HT+V+ + PP GV ELVT +GHL++PV+AGNRA K +KKV+ + DD+ A FTGE F TS+G TSP+
Sbjct: 66 EVAPVGEMTELSRLEIRVGKILEVAVHPTKEKIFVEKIDVG---EDEPRTICSGLRDYLKEDDLLNKDCIVLCNLKPRDLDGVPSNGMVLCASDAEHTDVQLVVPPAGVAAGELVTFDGHLAAPVDAGNRAVKAFKKVAGLFKTDDSGAAVFTGEPASS-FQTSSGPCTSPI 233
BLAST of mRNA_H-elongata_contig114400.1148.1 vs. uniprot
Match: A0A2V3IUX7_9FLOR (Putative methionine--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUX7_9FLOR) HSP 1 Score: 173 bits (438), Expect = 1.980e-49 Identity = 96/180 (53.33%), Postives = 119/180 (66.11%), Query Frame = 1
Query: 220 TTTIAEAPGVEKD----PAGELTELARLEIRVGTILEITRHPDADSLYMEKVDIGAGVEEEPRTIVSGLVSFCEKSDLLGRNVVVLCNLKPVSMKGVLSAGMLLCCSNGKHTEVKPLCPPEGVPLRELVTSEGHLSSPVEAGNRAGKVWKKVSKTLEVDDTKVARFTGEMLPDPFMTSTG 747
T A+AP D P LTEL+RLEIRVG I+E +HPDAD+LY+EKVD+G EEEPRTIVSGLV + ++GR+VVVLCNLKP +M+GV S GMLLC SN HT V PLC P+ P+ ELVT EGH S+P++ NRA K + +V+ L ++ VA F PF TS G
Sbjct: 94 TVATAQAPAAVGDGDSAPDLPLTELSRLEIRVGKIIECEKHPDADTLYVEKVDVG---EEEPRTIVSGLVKYIPLEKMVGRSVVVLCNLKPRAMRGVTSHGMLLCASNEDHTVVDPLCAPQDTPIGELVTFEGHKSAPIDPSNRATKAFDRVADGLSTNEAGVAMFEDV----PFSTSAG 266
BLAST of mRNA_H-elongata_contig114400.1148.1 vs. uniprot
Match: A0A7S3M138_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M138_9STRA) HSP 1 Score: 171 bits (434), Expect = 2.240e-49 Identity = 104/187 (55.61%), Postives = 123/187 (65.78%), Query Frame = 1
Query: 223 TTIAEAPGVEKDPAGELTELARLEIRVGTILEITRHPDADSLYMEKVDIGAGVEEEPRTIVSGLVSFCEKSDLLGRNVVVLCNLKPVSMKGVLSAGMLLCCSNGKHTEVKPLCPPEGVPLRELVTSEGHLSSPVEAGNRAGKVWKKVSKTLEVDDTKVARFTGEMLPDPFMTSTGAITSPLL-GPIS 780
TT+A A P+G+ E LEIRVG ILEI +HP+ADSLY+EKVD+G PRTIVSGLV FC LL R+VVVLCNLKP + KG+ S GMLLC SN +V+PL PP GVP ELV+ EGH+ P E GNRA K + KVS V D+ +A + G PFMTS G ITS +L GPIS
Sbjct: 61 TTVAPAA----KPSGDSIEA--LEIRVGKILEIGKHPEADSLYVEKVDLGES--SGPRTIVSGLVEFCTAEYLLNRDVVVLCNLKPRAFKGINSQGMLLCSSNKADGKVEPLIPPAGVPAGELVSFEGHVIKPEEPGNRATKAYTKVSGDFVVSDSGIATYKGI----PFMTSKGPITSTILKGPIS 235
BLAST of mRNA_H-elongata_contig114400.1148.1 vs. uniprot
Match: A0A5J4Z2W6_PORPP (Putative methionine--tRNA ligase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2W6_PORPP) HSP 1 Score: 171 bits (433), Expect = 5.980e-49 Identity = 103/207 (49.76%), Postives = 132/207 (63.77%), Query Frame = 1
Query: 172 PGAANGMSCTARMMS--DTTTIAEAPGVEKDPAGELTELARLEIRVGTILEITRHPDADSLYMEKVDIGAGVEEEPRTIVSGLVSFCEKSDLLGRNVVVLCNLKPVSMKGVLSAGMLLCCSNGKHTEVKPLCPPEGVPLRELVTSEGHLSSPVEAGNRAGKVWKKVSKTLEVDDTKVARFTGEMLPDPFMTSTGAITSP--LLGPIS 780
PGA + RM S D + E + + LTEL+RLEIRVG I++ +HP+ADSLY+E+VD+G E R IVSGLVSF +++ R V+VLCNLKP +M+G+ S GMLLC SN H++V PL PEGVP+ LVT EGH S P AGNRA K + KV+K+L D T VA F E +P F T +G SP L+GP+S
Sbjct: 57 PGATREGAGRMRMSSLEDGSAALETAAGNEGESLPLTELSRLEIRVGKIIKCEKHPEADSLYVEEVDVGD--ESGARVIVSGLVSFVPLEEMVDRTVIVLCNLKPRNMRGISSHGMLLCASNEDHSQVDPLTAPEGVPIGALVTFEGHRSEPAPAGNRASKAFDKVAKSLRTDATGVAMF--EQVP--FATPSGPCFSPKKLVGPVS 257 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig114400.1148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig114400.1148.1 >prot_H-elongata_contig114400.1148.1 ID=prot_H-elongata_contig114400.1148.1|Name=mRNA_H-elongata_contig114400.1148.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp MSCTARMMSDTTTIAEAPGVEKDPAGELTELARLEIRVGTILEITRHPDAback to top mRNA from alignment at H-elongata_contig114400:1080..1862- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig114400.1148.1 ID=mRNA_H-elongata_contig114400.1148.1|Name=mRNA_H-elongata_contig114400.1148.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=783bp|location=Sequence derived from alignment at H-elongata_contig114400:1080..1862- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig114400:1080..1862- >mRNA_H-elongata_contig114400.1148.1 ID=mRNA_H-elongata_contig114400.1148.1|Name=mRNA_H-elongata_contig114400.1148.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at H-elongata_contig114400:1080..1862- (Himanthalia elongata Himel1 dioecious)back to top |