mRNA_H-elongata_contig11392.1106.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig11392.1106.1 vs. uniprot
Match: D7FKS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKS4_ECTSI) HSP 1 Score: 174 bits (441), Expect = 2.330e-48 Identity = 82/105 (78.10%), Postives = 85/105 (80.95%), Query Frame = 1
Query: 7 GTDTFYEDPRTEVRRLLDKYHHDRFKIYNFTSELVHMTPKEGEHGAGARTERYSFTDDTCPPLESVVDFCENAKAWLDEHKENVVSLHCKAGKGRAGIMAACLMV 321
D YEDPRTEVRRLLDKYH DR+K+YNF SEL MTP H R ERY FTDDTCPPLESVVDFCENAKAWLD H +NVVSLHCKAGKGRAGIMAACLMV
Sbjct: 96 SADPLYEDPRTEVRRLLDKYHCDRYKVYNFASELAQMTPPT--HRMDTRVERYPFTDDTCPPLESVVDFCENAKAWLDAHDDNVVSLHCKAGKGRAGIMAACLMV 198
BLAST of mRNA_H-elongata_contig11392.1106.1 vs. uniprot
Match: A0A6H5KRR3_9PHAE (Phosphatase tensin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRR3_9PHAE) HSP 1 Score: 174 bits (440), Expect = 3.180e-48 Identity = 82/105 (78.10%), Postives = 85/105 (80.95%), Query Frame = 1
Query: 7 GTDTFYEDPRTEVRRLLDKYHHDRFKIYNFTSELVHMTPKEGEHGAGARTERYSFTDDTCPPLESVVDFCENAKAWLDEHKENVVSLHCKAGKGRAGIMAACLMV 321
D YEDPRTEVRRLLDKYH DR+K+YNF SEL MTP H R ERY FTDDTCPPLESVVDFCENAKAWLD H +NVVSLHCKAGKGRAGIMAACLMV
Sbjct: 93 SADPLYEDPRTEVRRLLDKYHCDRYKVYNFASELAQMTPPT--HRMETRVERYPFTDDTCPPLESVVDFCENAKAWLDAHDDNVVSLHCKAGKGRAGIMAACLMV 195
BLAST of mRNA_H-elongata_contig11392.1106.1 vs. uniprot
Match: A0A6H5KG06_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KG06_9PHAE) HSP 1 Score: 141 bits (355), Expect = 9.130e-37 Identity = 67/105 (63.81%), Postives = 79/105 (75.24%), Query Frame = 1
Query: 7 GTDTFYEDPRTEVRRLLDKYHHDRFKIYNFTSELVHMTPKEGEHGAGARTERYSFTDDTCPPLESVVDFCENAKAWLDEHKENVVSLHCKAGKGRAGIMAACLMV 321
G + Y +PRTEV+RLL+KYH +K+YNF +E P + G R ERY F+D TCPPLESVV+FCENAKAWLD + NVVSLHCKAGKGRAGIMAACL+V
Sbjct: 67 GVEHIYRNPRTEVQRLLEKYHRGHYKMYNFANEPGRTYPDQLFQG---RVERYPFSDHTCPPLESVVNFCENAKAWLDMDENNVVSLHCKAGKGRAGIMAACLLV 168
BLAST of mRNA_H-elongata_contig11392.1106.1 vs. uniprot
Match: A0A482SV29_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SV29_9ARCH) HSP 1 Score: 108 bits (270), Expect = 1.270e-25 Identity = 50/107 (46.73%), Postives = 71/107 (66.36%), Query Frame = 1
Query: 1 ARGTDTFYEDPRTEVRRLLDKYHHDRFKIYNFTSELVHMTPKEGEHGAGARTERYSFTDDTCPPLESVVDFCENAKAWLDEHKENVVSLHCKAGKGRAGIMAACLMV 321
A G + Y +PR E+RR +DK+HH+ +K++NF E + +G R ERY F D PPLE++V F +A+AWL+E E+VV++HCKAGKGRAG+M L+V
Sbjct: 70 ASGLEHIYRNPRYEIRRFMDKFHHENYKMFNFCCEYGRGYHPDIFYG---RVERYPFKDHNTPPLETMVAFANSAQAWLEEDPEHVVNMHCKAGKGRAGLMCCVLLV 173
BLAST of mRNA_H-elongata_contig11392.1106.1 vs. uniprot
Match: L8H5X5_ACACA (Protein-tyrosine-phosphatase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H5X5_ACACA) HSP 1 Score: 102 bits (253), Expect = 5.510e-23 Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = 1
Query: 13 DTFYEDPRTEVRRLLDKYHHDRFKIYNFTSELVHMTPKEGEHGAGARTERYSFTDDTCPPLESVVDFCENAKAWLDEHKENVVSLHCKAGKGRAGIMAACLMV 321
++ Y +P +EV+R + +HHD + +YN SE + +E HG R ERY F D CP +E + +FC++ + WL H+ NV ++HCKAGKGR G+M C M+
Sbjct: 41 ESVYRNPMSEVQRFFETFHHDHYMVYNLCSERDYK--EEKFHG---RVERYPFDDHNCPTIELIENFCDSVEVWLHSHRSNVAAVHCKAGKGRTGLMITCWML 138
BLAST of mRNA_H-elongata_contig11392.1106.1 vs. uniprot
Match: A0A7S1X835_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X835_9CHLO) HSP 1 Score: 97.1 bits (240), Expect = 1.280e-22 Identity = 44/105 (41.90%), Postives = 67/105 (63.81%), Query Frame = 1
Query: 7 GTDTFYEDPRTEVRRLLDKYHHDRFKIYNFTSELVHMTPKEGEHGAGARTERYSFTDDTCPPLESVVDFCENAKAWLDEHKENVVSLHCKAGKGRAGIMAACLMV 321
G ++FY +P EV+ LL+K+H R+K++N SE V+ + +H G+ RY F D L ++DFC +A+ WL + + NV+ +HCKAGKGR G+M CLM+
Sbjct: 47 GAESFYRNPMPEVKALLNKFHAGRYKVFNLCSEYVY----DSKHFGGS-VARYPFDDHQTTTLGMILDFCRDAEDWLRQDERNVMVVHCKAGKGRTGLMICCLML 146
BLAST of mRNA_H-elongata_contig11392.1106.1 vs. uniprot
Match: A0A7S1TW21_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TW21_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 6.320e-22 Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = 1
Query: 1 ARGTDTFYEDPRTEVRRLLDKYHHDRFKIYNFTSELVHMTPKEGEHGAGARTERYSFTDDTCPPLESVVDFCENAKAWLDEHKENVVSLHCKAGKGRAGIMAACLM 318
A G + F+ +PR E+RR L+ H +++YNF E G R ERY F D + PPLE++V F E+AKAWLD NVV++HCKAGKGRAG+M+ L+
Sbjct: 70 ATGLEHFFRNPRYELRRFLETKHAGHYRMYNFCCEPGRSYDPAVFEG---RVERYPFRDHSVPPLEAIVAFNESAKAWLDADPANVVNVHCKAGKGRAGLMSIMLL 172
BLAST of mRNA_H-elongata_contig11392.1106.1 vs. uniprot
Match: A0A7J7QE34_9CHLO (Protein-tyrosine phosphatase-like protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QE34_9CHLO) HSP 1 Score: 94.7 bits (234), Expect = 2.000e-21 Identity = 47/107 (43.93%), Postives = 58/107 (54.21%), Query Frame = 1
Query: 1 ARGTDTFYEDPRTEVRRLLDKYHHDRFKIYNFTSELVHMTPKEGEHGAGARTERYSFTDDTCPPLESVVDFCENAKAWLDEHKENVVSLHCKAGKGRAGIMAACLMV 321
A G D Y +P E+ R L YH R K+YN SE + K G +++ F D P L V FC +A AWL H NVV++HCKAGKGR GIM CLM+
Sbjct: 41 AEGKDVLYRNPLPEIARFLATYHQGRAKVYNLCSEHRYSADKL----PGVLLQQFPFDDHQTPALRVVQQFCTDAAAWLAAHPHNVVAVHCKAGKGRTGIMICCLML 143
BLAST of mRNA_H-elongata_contig11392.1106.1 vs. uniprot
Match: A0A5D6XS82_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XS82_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 2.240e-20 Identity = 46/105 (43.81%), Postives = 61/105 (58.10%), Query Frame = 1
Query: 7 GTDTFYEDPRTEVRRLLDKYHHDRFKIYNFTSELVHMTPKEGEHGAGARTERYSFTDDTCPPLESVVDFCENAKAWLDEHKENVVSLHCKAGKGRAGIMAACLMV 321
G + Y +PR EV R L+ H D++ +YNF +E P RT+ + D P LE ++ FCE+A AWLD VV+LHCKAGKGRAG+MA L+V
Sbjct: 66 GVELAYRNPRAEVVRFLETRHSDKYFVYNFCAEQTRCYPASV---FANRTKCFPIEDHNVPTLEQMLAFCEHAAAWLDADPTRVVALHCKAGKGRAGMMACALLV 167
BLAST of mRNA_H-elongata_contig11392.1106.1 vs. uniprot
Match: A0A7S1KB83_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1KB83_9ALVE) HSP 1 Score: 92.8 bits (229), Expect = 2.470e-20 Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = 1
Query: 7 GTDTFYEDPRTEVRRLLDKYHHDRFKIYNFTSELVHMTPKEGEHGAGARTERYSFTDDTCPPLESVVDFCENAKAWLDEHKENVVSLHCKAGKGRAGIMAACLMV 321
G + + +PR +VR+ LD H D +++ N SE P + G R Y F D T PP++ ++ FCE++ WL E KENV+++HCKAGKGR G+M + L++
Sbjct: 7 GIEALFRNPRRQVRKYLDHQHGDSYRVVNLCSESERQYPCKTFDG---RLVCYPFKDHTPPPIKMMLSFCEDSVEWLKESKENVLAVHCKAGKGRTGVMVSALLL 108 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11392.1106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11392.1106.1 >prot_H-elongata_contig11392.1106.1 ID=prot_H-elongata_contig11392.1106.1|Name=mRNA_H-elongata_contig11392.1106.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp ARGTDTFYEDPRTEVRRLLDKYHHDRFKIYNFTSELVHMTPKEGEHGAGAback to top mRNA from alignment at H-elongata_contig11392:365..1126- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11392.1106.1 ID=mRNA_H-elongata_contig11392.1106.1|Name=mRNA_H-elongata_contig11392.1106.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=762bp|location=Sequence derived from alignment at H-elongata_contig11392:365..1126- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11392:365..1126- >mRNA_H-elongata_contig11392.1106.1 ID=mRNA_H-elongata_contig11392.1106.1|Name=mRNA_H-elongata_contig11392.1106.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig11392:365..1126- (Himanthalia elongata Himel1 dioecious)back to top |