mRNA_H-elongata_contig11392.1106.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11392.1106.1
Unique NamemRNA_H-elongata_contig11392.1106.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11392.1106.1 vs. uniprot
Match: D7FKS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKS4_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 2.330e-48
Identity = 82/105 (78.10%), Postives = 85/105 (80.95%), Query Frame = 1
Query:    7 GTDTFYEDPRTEVRRLLDKYHHDRFKIYNFTSELVHMTPKEGEHGAGARTERYSFTDDTCPPLESVVDFCENAKAWLDEHKENVVSLHCKAGKGRAGIMAACLMV 321
              D  YEDPRTEVRRLLDKYH DR+K+YNF SEL  MTP    H    R ERY FTDDTCPPLESVVDFCENAKAWLD H +NVVSLHCKAGKGRAGIMAACLMV
Sbjct:   96 SADPLYEDPRTEVRRLLDKYHCDRYKVYNFASELAQMTPPT--HRMDTRVERYPFTDDTCPPLESVVDFCENAKAWLDAHDDNVVSLHCKAGKGRAGIMAACLMV 198          
BLAST of mRNA_H-elongata_contig11392.1106.1 vs. uniprot
Match: A0A6H5KRR3_9PHAE (Phosphatase tensin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRR3_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 3.180e-48
Identity = 82/105 (78.10%), Postives = 85/105 (80.95%), Query Frame = 1
Query:    7 GTDTFYEDPRTEVRRLLDKYHHDRFKIYNFTSELVHMTPKEGEHGAGARTERYSFTDDTCPPLESVVDFCENAKAWLDEHKENVVSLHCKAGKGRAGIMAACLMV 321
              D  YEDPRTEVRRLLDKYH DR+K+YNF SEL  MTP    H    R ERY FTDDTCPPLESVVDFCENAKAWLD H +NVVSLHCKAGKGRAGIMAACLMV
Sbjct:   93 SADPLYEDPRTEVRRLLDKYHCDRYKVYNFASELAQMTPPT--HRMETRVERYPFTDDTCPPLESVVDFCENAKAWLDAHDDNVVSLHCKAGKGRAGIMAACLMV 195          
BLAST of mRNA_H-elongata_contig11392.1106.1 vs. uniprot
Match: A0A6H5KG06_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KG06_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 9.130e-37
Identity = 67/105 (63.81%), Postives = 79/105 (75.24%), Query Frame = 1
Query:    7 GTDTFYEDPRTEVRRLLDKYHHDRFKIYNFTSELVHMTPKEGEHGAGARTERYSFTDDTCPPLESVVDFCENAKAWLDEHKENVVSLHCKAGKGRAGIMAACLMV 321
            G +  Y +PRTEV+RLL+KYH   +K+YNF +E     P +   G   R ERY F+D TCPPLESVV+FCENAKAWLD  + NVVSLHCKAGKGRAGIMAACL+V
Sbjct:   67 GVEHIYRNPRTEVQRLLEKYHRGHYKMYNFANEPGRTYPDQLFQG---RVERYPFSDHTCPPLESVVNFCENAKAWLDMDENNVVSLHCKAGKGRAGIMAACLLV 168          
BLAST of mRNA_H-elongata_contig11392.1106.1 vs. uniprot
Match: A0A482SV29_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SV29_9ARCH)

HSP 1 Score: 108 bits (270), Expect = 1.270e-25
Identity = 50/107 (46.73%), Postives = 71/107 (66.36%), Query Frame = 1
Query:    1 ARGTDTFYEDPRTEVRRLLDKYHHDRFKIYNFTSELVHMTPKEGEHGAGARTERYSFTDDTCPPLESVVDFCENAKAWLDEHKENVVSLHCKAGKGRAGIMAACLMV 321
            A G +  Y +PR E+RR +DK+HH+ +K++NF  E       +  +G   R ERY F D   PPLE++V F  +A+AWL+E  E+VV++HCKAGKGRAG+M   L+V
Sbjct:   70 ASGLEHIYRNPRYEIRRFMDKFHHENYKMFNFCCEYGRGYHPDIFYG---RVERYPFKDHNTPPLETMVAFANSAQAWLEEDPEHVVNMHCKAGKGRAGLMCCVLLV 173          
BLAST of mRNA_H-elongata_contig11392.1106.1 vs. uniprot
Match: L8H5X5_ACACA (Protein-tyrosine-phosphatase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H5X5_ACACA)

HSP 1 Score: 102 bits (253), Expect = 5.510e-23
Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = 1
Query:   13 DTFYEDPRTEVRRLLDKYHHDRFKIYNFTSELVHMTPKEGEHGAGARTERYSFTDDTCPPLESVVDFCENAKAWLDEHKENVVSLHCKAGKGRAGIMAACLMV 321
            ++ Y +P +EV+R  + +HHD + +YN  SE  +   +E  HG   R ERY F D  CP +E + +FC++ + WL  H+ NV ++HCKAGKGR G+M  C M+
Sbjct:   41 ESVYRNPMSEVQRFFETFHHDHYMVYNLCSERDYK--EEKFHG---RVERYPFDDHNCPTIELIENFCDSVEVWLHSHRSNVAAVHCKAGKGRTGLMITCWML 138          
BLAST of mRNA_H-elongata_contig11392.1106.1 vs. uniprot
Match: A0A7S1X835_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X835_9CHLO)

HSP 1 Score: 97.1 bits (240), Expect = 1.280e-22
Identity = 44/105 (41.90%), Postives = 67/105 (63.81%), Query Frame = 1
Query:    7 GTDTFYEDPRTEVRRLLDKYHHDRFKIYNFTSELVHMTPKEGEHGAGARTERYSFTDDTCPPLESVVDFCENAKAWLDEHKENVVSLHCKAGKGRAGIMAACLMV 321
            G ++FY +P  EV+ LL+K+H  R+K++N  SE V+    + +H  G+   RY F D     L  ++DFC +A+ WL + + NV+ +HCKAGKGR G+M  CLM+
Sbjct:   47 GAESFYRNPMPEVKALLNKFHAGRYKVFNLCSEYVY----DSKHFGGS-VARYPFDDHQTTTLGMILDFCRDAEDWLRQDERNVMVVHCKAGKGRTGLMICCLML 146          
BLAST of mRNA_H-elongata_contig11392.1106.1 vs. uniprot
Match: A0A7S1TW21_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TW21_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 6.320e-22
Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = 1
Query:    1 ARGTDTFYEDPRTEVRRLLDKYHHDRFKIYNFTSELVHMTPKEGEHGAGARTERYSFTDDTCPPLESVVDFCENAKAWLDEHKENVVSLHCKAGKGRAGIMAACLM 318
            A G + F+ +PR E+RR L+  H   +++YNF  E           G   R ERY F D + PPLE++V F E+AKAWLD    NVV++HCKAGKGRAG+M+  L+
Sbjct:   70 ATGLEHFFRNPRYELRRFLETKHAGHYRMYNFCCEPGRSYDPAVFEG---RVERYPFRDHSVPPLEAIVAFNESAKAWLDADPANVVNVHCKAGKGRAGLMSIMLL 172          
BLAST of mRNA_H-elongata_contig11392.1106.1 vs. uniprot
Match: A0A7J7QE34_9CHLO (Protein-tyrosine phosphatase-like protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QE34_9CHLO)

HSP 1 Score: 94.7 bits (234), Expect = 2.000e-21
Identity = 47/107 (43.93%), Postives = 58/107 (54.21%), Query Frame = 1
Query:    1 ARGTDTFYEDPRTEVRRLLDKYHHDRFKIYNFTSELVHMTPKEGEHGAGARTERYSFTDDTCPPLESVVDFCENAKAWLDEHKENVVSLHCKAGKGRAGIMAACLMV 321
            A G D  Y +P  E+ R L  YH  R K+YN  SE  +   K      G   +++ F D   P L  V  FC +A AWL  H  NVV++HCKAGKGR GIM  CLM+
Sbjct:   41 AEGKDVLYRNPLPEIARFLATYHQGRAKVYNLCSEHRYSADKL----PGVLLQQFPFDDHQTPALRVVQQFCTDAAAWLAAHPHNVVAVHCKAGKGRTGIMICCLML 143          
BLAST of mRNA_H-elongata_contig11392.1106.1 vs. uniprot
Match: A0A5D6XS82_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XS82_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.240e-20
Identity = 46/105 (43.81%), Postives = 61/105 (58.10%), Query Frame = 1
Query:    7 GTDTFYEDPRTEVRRLLDKYHHDRFKIYNFTSELVHMTPKEGEHGAGARTERYSFTDDTCPPLESVVDFCENAKAWLDEHKENVVSLHCKAGKGRAGIMAACLMV 321
            G +  Y +PR EV R L+  H D++ +YNF +E     P         RT+ +   D   P LE ++ FCE+A AWLD     VV+LHCKAGKGRAG+MA  L+V
Sbjct:   66 GVELAYRNPRAEVVRFLETRHSDKYFVYNFCAEQTRCYPASV---FANRTKCFPIEDHNVPTLEQMLAFCEHAAAWLDADPTRVVALHCKAGKGRAGMMACALLV 167          
BLAST of mRNA_H-elongata_contig11392.1106.1 vs. uniprot
Match: A0A7S1KB83_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1KB83_9ALVE)

HSP 1 Score: 92.8 bits (229), Expect = 2.470e-20
Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    7 GTDTFYEDPRTEVRRLLDKYHHDRFKIYNFTSELVHMTPKEGEHGAGARTERYSFTDDTCPPLESVVDFCENAKAWLDEHKENVVSLHCKAGKGRAGIMAACLMV 321
            G +  + +PR +VR+ LD  H D +++ N  SE     P +   G   R   Y F D T PP++ ++ FCE++  WL E KENV+++HCKAGKGR G+M + L++
Sbjct:    7 GIEALFRNPRRQVRKYLDHQHGDSYRVVNLCSESERQYPCKTFDG---RLVCYPFKDHTPPPIKMMLSFCEDSVEWLKESKENVLAVHCKAGKGRTGVMVSALLL 108          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11392.1106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKS4_ECTSI2.330e-4878.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRR3_9PHAE3.180e-4878.10Phosphatase tensin-type domain-containing protein ... [more]
A0A6H5KG06_9PHAE9.130e-3763.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A482SV29_9ARCH1.270e-2546.73Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
L8H5X5_ACACA5.510e-2341.75Protein-tyrosine-phosphatase n=1 Tax=Acanthamoeba ... [more]
A0A7S1X835_9CHLO1.280e-2241.90Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A7S1TW21_9STRA6.320e-2246.23Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7J7QE34_9CHLO2.000e-2143.93Protein-tyrosine phosphatase-like protein n=1 Tax=... [more]
A0A5D6XS82_9STRA2.240e-2043.81Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S1KB83_9ALVE2.470e-2040.00Hypothetical protein (Fragment) n=1 Tax=Vitrella b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11392contigH-elongata_contig11392:365..1126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.1
Seed ortholog evalue3.5e-41
Seed eggNOG ortholog2880.D7FKS4
KEGG rclassRC00078
KEGG koko:K01110
KEGG ReactionR03363,R04513
KEGG Pathwayko00562,ko01521,ko04068,ko04070,ko04071,ko04115,ko04140,ko04150,ko04151,ko04212,ko04218,ko04510,ko04931,ko05161,ko05165,ko05200,ko05206,ko05213,ko05214,ko05215,ko05218,ko05222,ko05224,ko05225,ko05230,map00562,map01521,map04068,map04070,map04071,map04115,map04140,map04150,map04151,map04212,map04218,map04510,map04931,map05161,map05165,map05200,map05206,map05213,map05214,map05215,map05218,map05222,map05224,map05225,map05230
EggNOG free text desc.phosphatase
EggNOG OGsCOG2453@1,KOG2283@2759
EC3.1.3.16,3.1.3.48,3.1.3.67
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929656.3762014-CDS-H-elongata_contig11392:364..5241622929656.3762014-CDS-H-elongata_contig11392:364..524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11392 365..524 -
1691679108.0751622-CDS-H-elongata_contig11392:364..5241691679108.0751622-CDS-H-elongata_contig11392:364..524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11392 365..524 -
1622929656.3997853-CDS-H-elongata_contig11392:965..11261622929656.3997853-CDS-H-elongata_contig11392:965..1126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11392 966..1126 -
1691679108.0881472-CDS-H-elongata_contig11392:965..11261691679108.0881472-CDS-H-elongata_contig11392:965..1126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11392 966..1126 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11392.1106.1prot_H-elongata_contig11392.1106.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11392 365..1126 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11392.1106.1

>prot_H-elongata_contig11392.1106.1 ID=prot_H-elongata_contig11392.1106.1|Name=mRNA_H-elongata_contig11392.1106.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
ARGTDTFYEDPRTEVRRLLDKYHHDRFKIYNFTSELVHMTPKEGEHGAGA
RTERYSFTDDTCPPLESVVDFCENAKAWLDEHKENVVSLHCKAGKGRAGI
MAACLMV
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mRNA from alignment at H-elongata_contig11392:365..1126-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11392.1106.1 ID=mRNA_H-elongata_contig11392.1106.1|Name=mRNA_H-elongata_contig11392.1106.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=762bp|location=Sequence derived from alignment at H-elongata_contig11392:365..1126- (Himanthalia elongata Himel1 dioecious)
GCCCGCGGTACAGATACGTTCTACGAAGACCCACGGACGGAGGTGCGGCG GCTCCTGGACAAGTACCACCATGACCGGTTCAAGATCTACAACTTCACAA GCGAACTCGTCCACATGACGCCTAAGGAGGGGGAACATGGTGCGGGGGCG AGGACTGAGCGGTGTGTATTTTCTGCAACGGCTTTGACGGCAGCTAGCAT GCGCCATCTCTCTCTCTCTAGATATATACTATTATAATTATACTGAATAT TTTAAAGTATGATGCGGAGTTTCGTTTGCTCGAGGCCGGCTCATCCCCTC AATAATTTTATTCAATAGTCGAGCACCCCTACGTGCGGTTGAGTTGGTGA CGGTGAATATCACACCCTGGGCAAAAAATAATGAACCCCCTCCCCCTGTA ATTGGAAATGTAGCATCAACGCGGATTGGGGCGGGCTTTTTCACGTGCCC CTGCCTCCTTCACCGGTGAGAGCATCAACCGCCTCCAGACAGTCGAACTC CTAACGCGTCGATAGCTGTCGACCAGAGTAAAATTTTAATGAGCGCCACC AAATGGTGACGAATTTCTCAGGCCCTCCTTCGTCACGTGCCCTCTCTTGA AGGTATTCCTTCACGGATGACACGTGTCCTCCCCTGGAATCTGTGGTGGA CTTCTGCGAGAACGCTAAGGCTTGGCTGGACGAACACAAAGAAAACGTGG TCTCGTTGCACTGTAAGGCGGGAAAAGGGAGGGCTGGGATAATGGCGGCA TGTCTCATGGTT
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Coding sequence (CDS) from alignment at H-elongata_contig11392:365..1126-

>mRNA_H-elongata_contig11392.1106.1 ID=mRNA_H-elongata_contig11392.1106.1|Name=mRNA_H-elongata_contig11392.1106.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig11392:365..1126- (Himanthalia elongata Himel1 dioecious)
GCCCGCGGTACAGATACGTTCTACGAAGACCCACGGACGGAGGTGCGGCG
GCTCCTGGACAAGTACCACCATGACCGGTTCAAGATCTACAACTTCACAA
GCGAACTCGTCCACATGACGCCTAAGGAGGGGGAACATGGTGCGGGGGCG
AGGACTGAGCGGCCCGCGGTACAGATACGTTCTACGAAGACCCACGGACG
GAGGTGCGGCGGCTCCTGGACAAGTACCACCATGACCGGTTCAAGATCTA
CAACTTCACAAGCGAACTCGTCCACATGACGCCTAAGGAGGGGGAACATG
GTGCGGGGGCGAGGACTGAGCGGTATTCCTTCACGGATGACACGTGTCCT
CCCCTGGAATCTGTGGTGGACTTCTGCGAGAACGCTAAGGCTTGGCTGGA
CGAACACAAAGAAAACGTGGTCTCGTTGCACTGTAAGGCGGGAAAAGGGA
GGGCTGGGATAATGGCGGCATGTCTCATGGTTGTATTCCTTCACGGATGA
CACGTGTCCTCCCCTGGAATCTGTGGTGGACTTCTGCGAGAACGCTAAGG
CTTGGCTGGACGAACACAAAGAAAACGTGGTCTCGTTGCACTGTAAGGCG
GGAAAAGGGAGGGCTGGGATAATGGCGGCATGTCTCATGGTT
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