mRNA_H-elongata_contig113757.1098.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig113757.1098.1
Unique NamemRNA_H-elongata_contig113757.1098.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig113757.1098.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 1.440e-34
Identity = 78/120 (65.00%), Postives = 89/120 (74.17%), Query Frame = 1
Query:  205 DRGERSRKTLRGLAVGALTAELSCEGVLMWWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDVKYVDMILFLRGNLDLISEDIAELPADGVNSAQSKIPGRLSN 564
            +R     +TLR  +  AL  + SCEGVL WW KR E SYPLLAR ARVVF APAS  V ERD  +AGRMMTSSRS+ D KYV+M+LFL GN+DL+ E I ELPADGVN  Q+KIPGRLSN
Sbjct:  623 ERARAELETLRSASDDALFGDTSCEGVLNWW-KRKEHSYPLLARVARVVFAAPASVMVQERDLGSAGRMMTSSRSTGDAKYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRLSN 741          
BLAST of mRNA_H-elongata_contig113757.1098.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 3.760e-33
Identity = 77/113 (68.14%), Postives = 89/113 (78.76%), Query Frame = 1
Query:  226 KTLRGLAVGALTAELSCEGVLMWWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDVKYVDMILFLRGNLDLISEDIAELPADGVNSAQSKIPGRLSN 564
            +TLRG+  G LT +LSCEGVL WW K+W   YPLLARAARVVFGAPAS+AVLERDF++A  MM SSRS+ D KYV+M+LFL GNLDLI E I EL  + V   Q+KIPGRLSN
Sbjct:  528 ETLRGVEAGTLTDDLSCEGVLEWW-KKWGRLYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDV---QAKIPGRLSN 636          
BLAST of mRNA_H-elongata_contig113757.1098.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 5.370e-32
Identity = 75/111 (67.57%), Postives = 87/111 (78.38%), Query Frame = 1
Query:  232 LRGLAVGALTAELSCEGVLMWWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDVKYVDMILFLRGNLDLISEDIAELPADGVNSAQSKIPGRLSN 564
            LR +  G+L   LSCE VL WW K W  +YPLLAR ARVVFGAPAS+AVLERDFSNAGRMMTSSRS+ D KYV+MI+FL GNLDLI EDI +L      +A++KIPGRL+N
Sbjct:  590 LRAVQGGSLAPGLSCEDVLKWW-KMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEA---AARTKIPGRLAN 696          
BLAST of mRNA_H-elongata_contig113757.1098.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 7.670e-31
Identity = 64/79 (81.01%), Postives = 70/79 (88.61%), Query Frame = 1
Query:  265 ELSCEGVLMWWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDVKYVDMILFLRGNLDLISEDI 501
            ELSC+ VL WW KRW SSYPLLARAARVVFGAPAS+AVLE DF +AGR+MTSSRS+TD KYV+MILFL GNLDLI EDI
Sbjct:   31 ELSCDSVLKWW-KRWMSSYPLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDI 108          
BLAST of mRNA_H-elongata_contig113757.1098.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 7.230e-30
Identity = 74/111 (66.67%), Postives = 85/111 (76.58%), Query Frame = 1
Query:  232 LRGLAVGALTAELSCEGVLMWWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDVKYVDMILFLRGNLDLISEDIAELPADGVNSAQSKIPGRLSN 564
            LR +  G+L A L CE VL WW K W  +YPLLAR ARVV GA AS+AVLE DFSNAGRMMTSSRS+ D KYV+MILFL GNLDLI EDI +L  + V  A++KIPGRL+N
Sbjct:  363 LRAVQGGSLAAGLRCEDVLKWW-KMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKL-TEAV--ARTKIPGRLAN 469          
BLAST of mRNA_H-elongata_contig113757.1098.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 5.050e-29
Identity = 70/118 (59.32%), Postives = 82/118 (69.49%), Query Frame = 1
Query:  232 LRGLAVGALTAELSCEGVLMWWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDVKYVDMILFLRGNLDLISEDIAELPADGVNSAQSKIPGRLSNSSRCIRP 585
            LR +  G L A L CE VL WW K W  +YPLLAR ARVVFGAPAS+AVLE  FSNAGRM TSSRS+ D  YV+MI+FL GNL+LI EDI +L       A++K PGRL+N    + P
Sbjct:  126 LRAVQGGRLAARLRCEDVLKWW-KMWAHAYPLLARVARVVFGAPASAAVLECYFSNAGRMTTSSRSTMDSTYVEMIMFLHGNLNLIPEDITKLTEV---VARTKFPGRLANPVDGLEP 239          
BLAST of mRNA_H-elongata_contig113757.1098.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.260e-25
Identity = 63/87 (72.41%), Postives = 70/87 (80.46%), Query Frame = 1
Query:  307 WESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTD-VKYVDMILFLRGNLDLISEDIAELPADGVNSAQSKIPGRLSN 564
            W   YPLLAR ARVVFGAPAS+AVLERDFSNAGRMMTSSR + D   YV+MILFL GNLDLI EDI +L  + V  A+SKIPGRL+N
Sbjct:    2 WAHVYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKL-TEAV--ARSKIPGRLAN 85          
BLAST of mRNA_H-elongata_contig113757.1098.1 vs. uniprot
Match: A0A6H5KGU9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU9_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.120e-20
Identity = 58/101 (57.43%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  265 ELSCEGVLMWWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDVKYVDMILFLRGNLDLISEDIAELPADGVNSAQSK-IPGRLSN 564
            ELSCE VL WW KRW SSYPLLARA RVVFGAPAS+A                       YV+MILFL GNLDLI +DI  LP DG +SA +K +PGRL N
Sbjct:   31 ELSCESVLKWW-KRWMSSYPLLARATRVVFGAPASAA-----------------------YVEMILFLHGNLDLIPDDIPALPTDGPDSATNKHMPGRLKN 107          
BLAST of mRNA_H-elongata_contig113757.1098.1 vs. uniprot
Match: A0A6H5KW12_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW12_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.530e-20
Identity = 57/84 (67.86%), Postives = 65/84 (77.38%), Query Frame = 1
Query:  316 SYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDVKY-VDMILFLRGNLDLISEDIAELPADGVNSAQSKIPGRLSN 564
            +Y LL   ARVVFGAPAS+A LERDFSNAGRMMTSSRS+ D KY V+MILFL GNLDLI EDI  L  + V  A++  PGRL+N
Sbjct:    5 AYLLLTGVARVVFGAPASAAALERDFSNAGRMMTSSRSAMDSKYYVEMILFLHGNLDLIPEDITTL-TEAV--ARTMFPGRLAN 85          
BLAST of mRNA_H-elongata_contig113757.1098.1 vs. uniprot
Match: A0A6H5KEK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK6_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.360e-19
Identity = 59/113 (52.21%), Postives = 71/113 (62.83%), Query Frame = 1
Query:  226 KTLRGLAVGALTAELSCEGVLMWWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDVKYVDMILFLRGNLDLISEDIAELPADGVNSAQSKIPGRLSN 564
            +TLRG+  G+LT +L CEGVL WW ++WE SYPLLARAARV FGAPA           AG          D KYV+M+LFL G LDL  E I EL  + +++   KIPGRLSN
Sbjct:  327 ETLRGVEAGSLTDDLGCEGVLKWW-EKWEGSYPLLARAARVDFGAPA-----------AG----------DAKYVEMVLFLHGKLDLFPEQIPELRDEDIHA---KIPGRLSN 414          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113757.1098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D8LFP4_ECTSI1.440e-3465.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI3.760e-3368.14Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE5.370e-3267.57Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L5L6_9PHAE7.670e-3181.01Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE7.230e-3066.67Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JML0_9PHAE5.050e-2959.32Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE1.260e-2572.41Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KGU9_9PHAE1.120e-2057.43Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KW12_9PHAE1.530e-2067.86Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KEK6_9PHAE2.360e-1952.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113757contigH-elongata_contig113757:498..1811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1314
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113757.1098.1prot_H-elongata_contig113757.1098.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig113757 660..1088 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929655.7566018-UTR-H-elongata_contig113757:497..6591622929655.7566018-UTR-H-elongata_contig113757:497..659Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113757 498..659 +
1691679107.8610756-UTR-H-elongata_contig113757:497..6591691679107.8610756-UTR-H-elongata_contig113757:497..659Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113757 498..659 +
1622929655.782853-UTR-H-elongata_contig113757:1088..18111622929655.782853-UTR-H-elongata_contig113757:1088..1811Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113757 1089..1811 +
1691679107.8840334-UTR-H-elongata_contig113757:1088..18111691679107.8840334-UTR-H-elongata_contig113757:1088..1811Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig113757 1089..1811 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929655.7702024-CDS-H-elongata_contig113757:659..10881622929655.7702024-CDS-H-elongata_contig113757:659..1088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113757 660..1088 +
1691679107.8749514-CDS-H-elongata_contig113757:659..10881691679107.8749514-CDS-H-elongata_contig113757:659..1088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113757 660..1088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig113757.1098.1

>prot_H-elongata_contig113757.1098.1 ID=prot_H-elongata_contig113757.1098.1|Name=mRNA_H-elongata_contig113757.1098.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
MSIIHMIHRALNEDDRGERSRKTLRGLAVGALTAELSCEGVLMWWWKRWE
SSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDVKYVDMIL
FLRGNLDLISEDIAELPADGVNSAQSKIPGRLSNSSRCIRPR*
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mRNA from alignment at H-elongata_contig113757:498..1811+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig113757.1098.1 ID=mRNA_H-elongata_contig113757.1098.1|Name=mRNA_H-elongata_contig113757.1098.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1314bp|location=Sequence derived from alignment at H-elongata_contig113757:498..1811+ (Himanthalia elongata Himel1 dioecious)
ATTAGCGTTTATGTTTTGTGCCACGTGTTCGCAAAGAGAAAAAGAGAGTC AGAGAACATCATGATACAGTGCTGCGGCCCTTTCAGCATATTATGTGTCG TCTACTACATTGTAATATTTATAGTATCCTGACCATCAGAAACACTAACA CTCGAATTGCCAATGTCCATTATACACATGATTCACAGAGCGCTCAACGA AGACGATCGAGGAGAGCGTTCGCGCAAGACGCTGAGGGGTCTGGCGGTTG GCGCACTGACTGCCGAGCTGAGCTGTGAGGGTGTGCTCATGTGGTGGTGG AAGAGATGGGAGAGCTCATACCCACTTCTGGCCCGGGCAGCTCGTGTGGT GTTCGGAGCTCCAGCATCGTCGGCGGTGCTCGAGCGCGATTTCAGCAATG CTGGGCGCATGATGACGTCATCGAGAAGCTCCACCGATGTCAAGTACGTG GACATGATCCTTTTTCTGCGCGGCAACCTGGACCTCATTTCCGAGGACAT TGCAGAGCTGCCAGCCGACGGGGTCAACAGTGCGCAAAGCAAGATTCCCG GGCGGTTGTCCAACTCGAGCCGGTGCATTCGGCCCAGGTGACCTAACTGA GGAGGAGGAGGAGGCTGTATCGGGAAAGGGCTACTAAAGCCAGGAAACGG GGTGGCACGGAAGGGCGCCGGGGCTGGGTTTGGAGTGTAGATGTGTACTA GCTCCACTTTGTACCTTTTGGGGTGGGTGGATCGAAAGCGACGAGTGCAC GTGAGTTTTGCTTTCCCAGCGTTCGCGAAAATAGTACATTGCCGGGAGGC TCTACTGCTGTTGTGTTTTTTTGTGTATTTCGCAACAAAATGCAAATGCA AATGCCAAACTTCAATGTTTAGTGTTGTGTTAAATTATTTGGGGTTTGGT GTTTGAGAGATCGCTCTCCTCGCGTTTCTCCGGTATTGACATCGCAGACC GAGAAATGGTGTTTCTGTTTCGATATCCGAGGGGGATCGTGGTGATGAAG ACTGTCCGACGTGATGCGTACATGAATTAAAAAAAAACTTAACCATGAAC ATAACATAAATGCGCGCGCACAGAGTGCACACTGTCGTATTAGCATATTA TAGTTTGTAGTGTCCAAAGAGGAGAAATACACGCCACGCAGAGCTGTGTC GTCGGAATGGAGCATTAAGGCAGACACCCTATTTCGTGCCGCGTTTTTTG GCGCAGGTGTGACGCCAGAGCTCCGCTGTACATTGATGTCATTTTCTAAA AACATTTCTTATCTTTTGACCCAGCACCAGTACAAGTAAGAGCTTTCTCT GACCTTTCTGGCCT
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Coding sequence (CDS) from alignment at H-elongata_contig113757:498..1811+

>mRNA_H-elongata_contig113757.1098.1 ID=mRNA_H-elongata_contig113757.1098.1|Name=mRNA_H-elongata_contig113757.1098.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig113757:498..1811+ (Himanthalia elongata Himel1 dioecious)
ATGTCCATTATACACATGATTCACAGAGCGCTCAACGAAGACGATCGAGG
AGAGCGTTCGCGCAAGACGCTGAGGGGTCTGGCGGTTGGCGCACTGACTG
CCGAGCTGAGCTGTGAGGGTGTGCTCATGTGGTGGTGGAAGAGATGGGAG
AGCTCATACCCACTTCTGGCCCGGGCAGCTCGTGTGGTGTTCGGAGCTCC
AGCATCGTCGGCGGTGCTCGAGCGCGATTTCAGCAATGCTGGGCGCATGA
TGACGTCATCGAGAAGCTCCACCGATGTCAAGTACGTGGACATGATCCTT
TTTCTGCGCGGCAACCTGGACCTCATTTCCGAGGACATTGCAGAGCTGCC
AGCCGACGGGGTCAACAGTGCGCAAAGCAAGATTCCCGGGCGGTTGTCCA
ACTCGAGCCGGTGCATTCGGCCCAGGTGAATGTCCATTATACACATGATT
CACAGAGCGCTCAACGAAGACGATCGAGGAGAGCGTTCGCGCAAGACGCT
GAGGGGTCTGGCGGTTGGCGCACTGACTGCCGAGCTGAGCTGTGAGGGTG
TGCTCATGTGGTGGTGGAAGAGATGGGAGAGCTCATACCCACTTCTGGCC
CGGGCAGCTCGTGTGGTGTTCGGAGCTCCAGCATCGTCGGCGGTGCTCGA
GCGCGATTTCAGCAATGCTGGGCGCATGATGACGTCATCGAGAAGCTCCA
CCGATGTCAAGTACGTGGACATGATCCTTTTTCTGCGCGGCAACCTGGAC
CTCATTTCCGAGGACATTGCAGAGCTGCCAGCCGACGGGGTCAACAGTGC
GCAAAGCAAGATTCCCGGGCGGTTGTCCAACTCGAGCCGGTGCATTCGGC
CCAGGTGA
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