mRNA_H-elongata_contig113757.1098.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig113757.1098.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI) HSP 1 Score: 147 bits (370), Expect = 1.440e-34 Identity = 78/120 (65.00%), Postives = 89/120 (74.17%), Query Frame = 1
Query: 205 DRGERSRKTLRGLAVGALTAELSCEGVLMWWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDVKYVDMILFLRGNLDLISEDIAELPADGVNSAQSKIPGRLSN 564
+R +TLR + AL + SCEGVL WW KR E SYPLLAR ARVVF APAS V ERD +AGRMMTSSRS+ D KYV+M+LFL GN+DL+ E I ELPADGVN Q+KIPGRLSN
Sbjct: 623 ERARAELETLRSASDDALFGDTSCEGVLNWW-KRKEHSYPLLARVARVVFAAPASVMVQERDLGSAGRMMTSSRSTGDAKYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRLSN 741
BLAST of mRNA_H-elongata_contig113757.1098.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI) HSP 1 Score: 142 bits (358), Expect = 3.760e-33 Identity = 77/113 (68.14%), Postives = 89/113 (78.76%), Query Frame = 1
Query: 226 KTLRGLAVGALTAELSCEGVLMWWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDVKYVDMILFLRGNLDLISEDIAELPADGVNSAQSKIPGRLSN 564
+TLRG+ G LT +LSCEGVL WW K+W YPLLARAARVVFGAPAS+AVLERDF++A MM SSRS+ D KYV+M+LFL GNLDLI E I EL + V Q+KIPGRLSN
Sbjct: 528 ETLRGVEAGTLTDDLSCEGVLEWW-KKWGRLYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDV---QAKIPGRLSN 636
BLAST of mRNA_H-elongata_contig113757.1098.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE) HSP 1 Score: 139 bits (350), Expect = 5.370e-32 Identity = 75/111 (67.57%), Postives = 87/111 (78.38%), Query Frame = 1
Query: 232 LRGLAVGALTAELSCEGVLMWWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDVKYVDMILFLRGNLDLISEDIAELPADGVNSAQSKIPGRLSN 564
LR + G+L LSCE VL WW K W +YPLLAR ARVVFGAPAS+AVLERDFSNAGRMMTSSRS+ D KYV+MI+FL GNLDLI EDI +L +A++KIPGRL+N
Sbjct: 590 LRAVQGGSLAPGLSCEDVLKWW-KMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEA---AARTKIPGRLAN 696
BLAST of mRNA_H-elongata_contig113757.1098.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE) HSP 1 Score: 124 bits (312), Expect = 7.670e-31 Identity = 64/79 (81.01%), Postives = 70/79 (88.61%), Query Frame = 1
Query: 265 ELSCEGVLMWWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDVKYVDMILFLRGNLDLISEDI 501
ELSC+ VL WW KRW SSYPLLARAARVVFGAPAS+AVLE DF +AGR+MTSSRS+TD KYV+MILFL GNLDLI EDI
Sbjct: 31 ELSCDSVLKWW-KRWMSSYPLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDI 108
BLAST of mRNA_H-elongata_contig113757.1098.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE) HSP 1 Score: 131 bits (329), Expect = 7.230e-30 Identity = 74/111 (66.67%), Postives = 85/111 (76.58%), Query Frame = 1
Query: 232 LRGLAVGALTAELSCEGVLMWWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDVKYVDMILFLRGNLDLISEDIAELPADGVNSAQSKIPGRLSN 564
LR + G+L A L CE VL WW K W +YPLLAR ARVV GA AS+AVLE DFSNAGRMMTSSRS+ D KYV+MILFL GNLDLI EDI +L + V A++KIPGRL+N
Sbjct: 363 LRAVQGGSLAAGLRCEDVLKWW-KMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKL-TEAV--ARTKIPGRLAN 469
BLAST of mRNA_H-elongata_contig113757.1098.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE) HSP 1 Score: 124 bits (310), Expect = 5.050e-29 Identity = 70/118 (59.32%), Postives = 82/118 (69.49%), Query Frame = 1
Query: 232 LRGLAVGALTAELSCEGVLMWWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDVKYVDMILFLRGNLDLISEDIAELPADGVNSAQSKIPGRLSNSSRCIRP 585
LR + G L A L CE VL WW K W +YPLLAR ARVVFGAPAS+AVLE FSNAGRM TSSRS+ D YV+MI+FL GNL+LI EDI +L A++K PGRL+N + P
Sbjct: 126 LRAVQGGRLAARLRCEDVLKWW-KMWAHAYPLLARVARVVFGAPASAAVLECYFSNAGRMTTSSRSTMDSTYVEMIMFLHGNLNLIPEDITKLTEV---VARTKFPGRLANPVDGLEP 239
BLAST of mRNA_H-elongata_contig113757.1098.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE) HSP 1 Score: 110 bits (274), Expect = 1.260e-25 Identity = 63/87 (72.41%), Postives = 70/87 (80.46%), Query Frame = 1
Query: 307 WESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTD-VKYVDMILFLRGNLDLISEDIAELPADGVNSAQSKIPGRLSN 564
W YPLLAR ARVVFGAPAS+AVLERDFSNAGRMMTSSR + D YV+MILFL GNLDLI EDI +L + V A+SKIPGRL+N
Sbjct: 2 WAHVYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKL-TEAV--ARSKIPGRLAN 85
BLAST of mRNA_H-elongata_contig113757.1098.1 vs. uniprot
Match: A0A6H5KGU9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU9_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 1.120e-20 Identity = 58/101 (57.43%), Postives = 64/101 (63.37%), Query Frame = 1
Query: 265 ELSCEGVLMWWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDVKYVDMILFLRGNLDLISEDIAELPADGVNSAQSK-IPGRLSN 564
ELSCE VL WW KRW SSYPLLARA RVVFGAPAS+A YV+MILFL GNLDLI +DI LP DG +SA +K +PGRL N
Sbjct: 31 ELSCESVLKWW-KRWMSSYPLLARATRVVFGAPASAA-----------------------YVEMILFLHGNLDLIPDDIPALPTDGPDSATNKHMPGRLKN 107
BLAST of mRNA_H-elongata_contig113757.1098.1 vs. uniprot
Match: A0A6H5KW12_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW12_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 1.530e-20 Identity = 57/84 (67.86%), Postives = 65/84 (77.38%), Query Frame = 1
Query: 316 SYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDVKY-VDMILFLRGNLDLISEDIAELPADGVNSAQSKIPGRLSN 564
+Y LL ARVVFGAPAS+A LERDFSNAGRMMTSSRS+ D KY V+MILFL GNLDLI EDI L + V A++ PGRL+N
Sbjct: 5 AYLLLTGVARVVFGAPASAAALERDFSNAGRMMTSSRSAMDSKYYVEMILFLHGNLDLIPEDITTL-TEAV--ARTMFPGRLAN 85
BLAST of mRNA_H-elongata_contig113757.1098.1 vs. uniprot
Match: A0A6H5KEK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK6_9PHAE) HSP 1 Score: 100 bits (249), Expect = 2.360e-19 Identity = 59/113 (52.21%), Postives = 71/113 (62.83%), Query Frame = 1
Query: 226 KTLRGLAVGALTAELSCEGVLMWWWKRWESSYPLLARAARVVFGAPASSAVLERDFSNAGRMMTSSRSSTDVKYVDMILFLRGNLDLISEDIAELPADGVNSAQSKIPGRLSN 564
+TLRG+ G+LT +L CEGVL WW ++WE SYPLLARAARV FGAPA AG D KYV+M+LFL G LDL E I EL + +++ KIPGRLSN
Sbjct: 327 ETLRGVEAGSLTDDLGCEGVLKWW-EKWEGSYPLLARAARVDFGAPA-----------AG----------DAKYVEMVLFLHGKLDLFPEQIPELRDEDIHA---KIPGRLSN 414 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113757.1098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig113757.1098.1 >prot_H-elongata_contig113757.1098.1 ID=prot_H-elongata_contig113757.1098.1|Name=mRNA_H-elongata_contig113757.1098.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp MSIIHMIHRALNEDDRGERSRKTLRGLAVGALTAELSCEGVLMWWWKRWEback to top mRNA from alignment at H-elongata_contig113757:498..1811+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig113757.1098.1 ID=mRNA_H-elongata_contig113757.1098.1|Name=mRNA_H-elongata_contig113757.1098.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1314bp|location=Sequence derived from alignment at H-elongata_contig113757:498..1811+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig113757:498..1811+ >mRNA_H-elongata_contig113757.1098.1 ID=mRNA_H-elongata_contig113757.1098.1|Name=mRNA_H-elongata_contig113757.1098.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig113757:498..1811+ (Himanthalia elongata Himel1 dioecious)back to top |