mRNA_H-elongata_contig112962.1053.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig112962.1053.1 vs. uniprot
Match: A0A835ZGG2_9STRA (Protein-tyrosine phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGG2_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 5.960e-21 Identity = 54/126 (42.86%), Postives = 77/126 (61.11%), Query Frame = 1
Query: 13 VMENLWLSGQEVTADKASLQREGVTHIVNCSIHLTNFFPQDFSYHRVRWADKSGQDIDPAVLEAAFRHIDAARSAGNACLVHCRAGMSRSCSLVVGYLMQLGEGMSLVAALQFCQAKRRQVQRTNG 390
++ +L L + AD+ +L+R G++HI+NC+ +FP+ F+Y V D Q I VLE+ F+ ID AR CLVHC AGMSRS S+V+ YLM+ EGMSL+ AL F + +R V +G
Sbjct: 15 ILPSLLLGSATLAADQDALRRHGISHIINCTSRHP-YFPEHFNYLCVPLRDSPDQPIRE-VLESCFQLIDEAREQDTCCLVHCSAGMSRSASIVIAYLMKR-EGMSLLEALGFARERRPSVSPNSG 137
BLAST of mRNA_H-elongata_contig112962.1053.1 vs. uniprot
Match: A0A835ZD16_9STRA (Protein-tyrosine phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD16_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 1.330e-20 Identity = 50/139 (35.97%), Postives = 82/139 (58.99%), Query Frame = 1
Query: 1 KATKVMENLWLSGQEVTADKASLQREGVTHIVNCSIHLTNFFP---------QDFSYHRVRWADKSGQDIDPAVLEAAFRHIDAARSAGNACLVHCRAGMSRSCSLVVGYLMQLGEGMSLVAALQFCQAKRRQVQRTNG 390
+A ++++ L ++G+++T DK +++ G+THI+NC+ H N FP + F Y ++ D QDI A L +FR I+ AR+ G CLVHC +GMSRS ++ + YL+Q M+L+ A+ + +RRQ G
Sbjct: 66 QAARILDWLAIAGEDITLDKDAMKAMGITHIINCTRHCPNLFPDHSGQPVPTEGFHYLKLSLQDSIDQDITSA-LAPSFRMIEEARACGGCCLVHCSSGMSRSATITIAYLVQ-HRNMTLLDAMHLTKDRRRQTSPNPG 202
BLAST of mRNA_H-elongata_contig112962.1053.1 vs. uniprot
Match: A0A0G4GLF8_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GLF8_VITBC) HSP 1 Score: 87.0 bits (214), Expect = 7.670e-18 Identity = 49/131 (37.40%), Postives = 74/131 (56.49%), Query Frame = 1
Query: 10 KVMENLWLSGQEVTADKASLQREGVTHIVNCSIHLTNFFPQD----FSYHRVRWADKSGQDIDPAVLEAAFRHIDAARSAGNACLVHCRAGMSRSCSLVVGYLMQLGEGMSLVAALQFCQAKRRQVQRTNG 390
+V + L++S +EV DK+ L G++H+VN ++ N F D YH + DK Q +D +VLE+ I A G + LVHC+AG+SRS +LV+ YLM++ EGMS A++ + R V G
Sbjct: 130 RVRDRLYISSEEVAKDKSMLLSHGISHVVNAAVECPNVFENDPNMRIQYHTLDLRDKGTQVLDESVLESTVAWIQGALDNGGSVLVHCKAGISRSATLVIAYLMRV-EGMSYDEAVEEVRKVRHAVDPNLG 259
BLAST of mRNA_H-elongata_contig112962.1053.1 vs. uniprot
Match: A0A6A4VUY9_AMPAM (Dual specificity protein phosphatase 19 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VUY9_AMPAM) HSP 1 Score: 84.3 bits (207), Expect = 1.570e-17 Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 1
Query: 25 LWLSGQEVTADKASLQREGVTHIVNCSIHLTNFFPQDFSYHRVRWADKSGQDIDPAVLEAAFRHIDAARSAGNACLVHCRAGMSRSCSLVVGYLMQLGEGMSLVAALQFCQAKRR 369
L + Q+ +A L+R GVTH++NC+ + N F + +Y V D ++ A AAF ID+AR+ G CLVHC AG+SRS SL V YLM+ EG++ LQ A RR
Sbjct: 67 LCVGSQDAAHHRALLRRLGVTHVLNCATRVDNLFTDELTYLSVPLLDLPETRLETA-FPAAFEFIDSARATGGRCLVHCNAGVSRSASLCVAYLMER-EGLTFTQGLQQVNAVRR 179
BLAST of mRNA_H-elongata_contig112962.1053.1 vs. uniprot
Match: A0A024TLS3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TLS3_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 1.130e-16 Identity = 47/133 (35.34%), Postives = 71/133 (53.38%), Query Frame = 1
Query: 7 TKVMENLWLSGQEVTADKASLQREGVTHIVNCSIHLTNFFPQDFSYHRVRWADKSGQDIDPAVLEAAFRHIDAARSAGNACLVHCRAGMSRSCSLVVGYLMQLGEGMSLVAALQFCQAKRRQVQRTNGRLNIL 405
TK+++ L++ G+ V D ++Q G+TH+VNC+ + NFF Y RV D ID I AR G CLVHC GMSRS + ++ YL++ GMS++ ALQ+ + R + G ++ L
Sbjct: 47 TKILDGLYVGGRGVVDDLMAIQSLGITHVVNCTEDIPNFFDDTLEYLRVPVPDDPESPIDE-YFPVVVHFIQNARDKGQTCLVHCSHGMSRSATFILVYLIER-HGMSVLEALQYTRTLRPVISPNVGFMSKL 177
BLAST of mRNA_H-elongata_contig112962.1053.1 vs. uniprot
Match: A0A5S6QDX0_TRIMR (Protein-tyrosine-phosphatase n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QDX0_TRIMR) HSP 1 Score: 79.7 bits (195), Expect = 3.270e-16 Identity = 48/129 (37.21%), Postives = 74/129 (57.36%), Query Frame = 1
Query: 4 ATKVMENLWLSGQEVTADKASLQREGVTHIVNCSIHLTNFFPQDFSYHRVRWADKSGQDIDPAVLEAAFRHIDAARSAGNACLVHCRAGMSRSCSLVVGYLMQLGEGMSLVAALQFCQAKRRQVQRTNG 390
A ++ L+LS + A+ L + G+THIVN + + N+FP F+Y R++ +D ++I E I+ AR A CLVHC AG+SRS ++V+ YL++ E MS+ AL + Q +R V NG
Sbjct: 14 ANQIKPYLYLSSEYAAANLELLLQRGITHIVNAATAVDNYFPNLFTYKRIQISDLPTENIKQYFGEC-NDFINEARYANGKCLVHCNAGVSRSATIVMAYLIKY-ECMSVEHALSYVQERRSIVSPNNG 140
BLAST of mRNA_H-elongata_contig112962.1053.1 vs. uniprot
Match: A0A2R5LGN0_9ACAR (Putative dual specificity phosphatase (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LGN0_9ACAR) HSP 1 Score: 80.1 bits (196), Expect = 6.900e-16 Identity = 50/130 (38.46%), Postives = 67/130 (51.54%), Query Frame = 1
Query: 1 KATKVMENLWLSGQEVTADKASLQREGVTHIVNCSIHLTNFFPQDFSYHRVRWADKSGQDIDPAVLEAAFRHIDAARSAGNACLVHCRAGMSRSCSLVVGYLMQLGEGMSLVAALQFCQAKRRQVQRTNG 390
+ +V+ L++ Q+V ADK L G+TH+VN + + NF D Y R D ++ P + E ID A S G LVHC AG+SRS SLVV YLM L +GM AL Q R + +G
Sbjct: 65 QVAEVIPGLYVGSQDVAADKNLLVSRGITHVVNAATFIPNFHEPDLVYKRFEVLDLPDSNLHP-LFEPCCDFIDEALSGGGGVLVHCNAGVSRSVSLVVAYLM-LRKGMRFANALARVQEVRPVARPNDG 192
BLAST of mRNA_H-elongata_contig112962.1053.1 vs. uniprot
Match: A0A6G0X4Z4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4Z4_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.010e-15 Identity = 50/136 (36.76%), Postives = 74/136 (54.41%), Query Frame = 1
Query: 7 TKVMENLWLSGQEVTADKASLQREGVTHIVNCSIHLTNFF----------------PQDFSYHRVRWADKSGQDIDPAVLEAAFRHIDAARSAGNACLVHCRAGMSRSCSLVVGYLMQLGEGMSLVAALQFCQAKR 366
TK+++ L++ G+E D A+L+ VTHIVNC+ + NFF P SY RV +D ID + ++ F I AR +G CLVHC GMSRS + ++ YL+ E MS++ AL++ +A R
Sbjct: 24 TKILDGLYVGGRESVDDLAALEMLAVTHIVNCTEDIPNFFYGEYEPMPCTTSSTNDPGTISYLRVPISDDPDVAID-SFFQSVFGFIQNARDSGKVCLVHCSQGMSRSPTFILAYLVAR-ENMSVLEALRYTRALR 157
BLAST of mRNA_H-elongata_contig112962.1053.1 vs. uniprot
Match: A0A1V9XKK9_9ACAR (Dual specificity protein phosphatase 19-like n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9XKK9_9ACAR) HSP 1 Score: 79.3 bits (194), Expect = 1.410e-15 Identity = 47/126 (37.30%), Postives = 73/126 (57.94%), Query Frame = 1
Query: 13 VMENLWLSGQEVTADKASLQREGVTHIVNCSIHLTNFFPQDFSYHRVRWADKSGQDIDPAVLEAAFRHIDAARSAGNACLVHCRAGMSRSCSLVVGYLMQLGEGMSLVAALQFCQAKRRQVQRTNG 390
V L++ Q+V A+K L+ + V HIVN + + N FP+DF Y ++ D QDI +V E+ F ID A +AG + VHC AG+SRS ++ + YL+ + M L AL +++R V+ +G
Sbjct: 70 VAPGLYVGSQDVAAEKEILKSKNVLHIVNAASGIGNHFPEDFRYMKLNILDLPEQDIK-SVFESCFAFIDEALAAGGSTFVHCNAGVSRSSTICIAYLISR-QRMRLNRALNKVRSERPIVRPNDG 193
BLAST of mRNA_H-elongata_contig112962.1053.1 vs. uniprot
Match: A0A804JYP2_MUSAM (Uncharacterized protein n=3 Tax=Musa TaxID=4640 RepID=A0A804JYP2_MUSAM) HSP 1 Score: 78.2 bits (191), Expect = 2.110e-15 Identity = 50/133 (37.59%), Postives = 73/133 (54.89%), Query Frame = 1
Query: 10 KVMENLWLSGQEVTADKASLQREGVTHIVNCSIHLTNFFPQDFSYHRVRWADKSGQDIDPAVLEAAFRHIDAARSAGNACLVHCRAGMSRSCSLVVGYLMQLGEGMSLVAALQFCQAKRRQVQRTNGRLNILS 408
++ E L+L +K++L+ +THI+ + L FP DF Y ++ D G ++D + F ID ARSAG LVHC AGMSRS ++VV YLM+ MSL AL ++KR + +G L L+
Sbjct: 33 QIEEGLFLGSVGAALNKSALKDLNITHILTVAKSLDPAFPIDFVYKKIDVFDTPGTELDK-YFDECFSFIDEARSAGGGVLVHCFAGMSRSVTVVVAYLMKKHR-MSLSDALALVRSKRPHIAPNHGFLTQLA 163 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112962.1053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig112962.1053.1 >prot_H-elongata_contig112962.1053.1 ID=prot_H-elongata_contig112962.1053.1|Name=mRNA_H-elongata_contig112962.1053.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp MENLWLSGQEVTADKASLQREGVTHIVNCSIHLTNFFPQDFSYHRVRWADback to top mRNA from alignment at H-elongata_contig112962:262..1271+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig112962.1053.1 ID=mRNA_H-elongata_contig112962.1053.1|Name=mRNA_H-elongata_contig112962.1053.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1010bp|location=Sequence derived from alignment at H-elongata_contig112962:262..1271+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig112962:262..1271+ >mRNA_H-elongata_contig112962.1053.1 ID=mRNA_H-elongata_contig112962.1053.1|Name=mRNA_H-elongata_contig112962.1053.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig112962:262..1271+ (Himanthalia elongata Himel1 dioecious)back to top |