mRNA_H-elongata_contig112962.1053.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112962.1053.1
Unique NamemRNA_H-elongata_contig112962.1053.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig112962.1053.1 vs. uniprot
Match: A0A835ZGG2_9STRA (Protein-tyrosine phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGG2_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.960e-21
Identity = 54/126 (42.86%), Postives = 77/126 (61.11%), Query Frame = 1
Query:   13 VMENLWLSGQEVTADKASLQREGVTHIVNCSIHLTNFFPQDFSYHRVRWADKSGQDIDPAVLEAAFRHIDAARSAGNACLVHCRAGMSRSCSLVVGYLMQLGEGMSLVAALQFCQAKRRQVQRTNG 390
            ++ +L L    + AD+ +L+R G++HI+NC+     +FP+ F+Y  V   D   Q I   VLE+ F+ ID AR     CLVHC AGMSRS S+V+ YLM+  EGMSL+ AL F + +R  V   +G
Sbjct:   15 ILPSLLLGSATLAADQDALRRHGISHIINCTSRHP-YFPEHFNYLCVPLRDSPDQPIRE-VLESCFQLIDEAREQDTCCLVHCSAGMSRSASIVIAYLMKR-EGMSLLEALGFARERRPSVSPNSG 137          
BLAST of mRNA_H-elongata_contig112962.1053.1 vs. uniprot
Match: A0A835ZD16_9STRA (Protein-tyrosine phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD16_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.330e-20
Identity = 50/139 (35.97%), Postives = 82/139 (58.99%), Query Frame = 1
Query:    1 KATKVMENLWLSGQEVTADKASLQREGVTHIVNCSIHLTNFFP---------QDFSYHRVRWADKSGQDIDPAVLEAAFRHIDAARSAGNACLVHCRAGMSRSCSLVVGYLMQLGEGMSLVAALQFCQAKRRQVQRTNG 390
            +A ++++ L ++G+++T DK +++  G+THI+NC+ H  N FP         + F Y ++   D   QDI  A L  +FR I+ AR+ G  CLVHC +GMSRS ++ + YL+Q    M+L+ A+   + +RRQ     G
Sbjct:   66 QAARILDWLAIAGEDITLDKDAMKAMGITHIINCTRHCPNLFPDHSGQPVPTEGFHYLKLSLQDSIDQDITSA-LAPSFRMIEEARACGGCCLVHCSSGMSRSATITIAYLVQ-HRNMTLLDAMHLTKDRRRQTSPNPG 202          
BLAST of mRNA_H-elongata_contig112962.1053.1 vs. uniprot
Match: A0A0G4GLF8_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GLF8_VITBC)

HSP 1 Score: 87.0 bits (214), Expect = 7.670e-18
Identity = 49/131 (37.40%), Postives = 74/131 (56.49%), Query Frame = 1
Query:   10 KVMENLWLSGQEVTADKASLQREGVTHIVNCSIHLTNFFPQD----FSYHRVRWADKSGQDIDPAVLEAAFRHIDAARSAGNACLVHCRAGMSRSCSLVVGYLMQLGEGMSLVAALQFCQAKRRQVQRTNG 390
            +V + L++S +EV  DK+ L   G++H+VN ++   N F  D      YH +   DK  Q +D +VLE+    I  A   G + LVHC+AG+SRS +LV+ YLM++ EGMS   A++  +  R  V    G
Sbjct:  130 RVRDRLYISSEEVAKDKSMLLSHGISHVVNAAVECPNVFENDPNMRIQYHTLDLRDKGTQVLDESVLESTVAWIQGALDNGGSVLVHCKAGISRSATLVIAYLMRV-EGMSYDEAVEEVRKVRHAVDPNLG 259          
BLAST of mRNA_H-elongata_contig112962.1053.1 vs. uniprot
Match: A0A6A4VUY9_AMPAM (Dual specificity protein phosphatase 19 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VUY9_AMPAM)

HSP 1 Score: 84.3 bits (207), Expect = 1.570e-17
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   25 LWLSGQEVTADKASLQREGVTHIVNCSIHLTNFFPQDFSYHRVRWADKSGQDIDPAVLEAAFRHIDAARSAGNACLVHCRAGMSRSCSLVVGYLMQLGEGMSLVAALQFCQAKRR 369
            L +  Q+    +A L+R GVTH++NC+  + N F  + +Y  V   D     ++ A   AAF  ID+AR+ G  CLVHC AG+SRS SL V YLM+  EG++    LQ   A RR
Sbjct:   67 LCVGSQDAAHHRALLRRLGVTHVLNCATRVDNLFTDELTYLSVPLLDLPETRLETA-FPAAFEFIDSARATGGRCLVHCNAGVSRSASLCVAYLMER-EGLTFTQGLQQVNAVRR 179          
BLAST of mRNA_H-elongata_contig112962.1053.1 vs. uniprot
Match: A0A024TLS3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TLS3_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.130e-16
Identity = 47/133 (35.34%), Postives = 71/133 (53.38%), Query Frame = 1
Query:    7 TKVMENLWLSGQEVTADKASLQREGVTHIVNCSIHLTNFFPQDFSYHRVRWADKSGQDIDPAVLEAAFRHIDAARSAGNACLVHCRAGMSRSCSLVVGYLMQLGEGMSLVAALQFCQAKRRQVQRTNGRLNIL 405
            TK+++ L++ G+ V  D  ++Q  G+TH+VNC+  + NFF     Y RV   D     ID          I  AR  G  CLVHC  GMSRS + ++ YL++   GMS++ ALQ+ +  R  +    G ++ L
Sbjct:   47 TKILDGLYVGGRGVVDDLMAIQSLGITHVVNCTEDIPNFFDDTLEYLRVPVPDDPESPIDE-YFPVVVHFIQNARDKGQTCLVHCSHGMSRSATFILVYLIER-HGMSVLEALQYTRTLRPVISPNVGFMSKL 177          
BLAST of mRNA_H-elongata_contig112962.1053.1 vs. uniprot
Match: A0A5S6QDX0_TRIMR (Protein-tyrosine-phosphatase n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QDX0_TRIMR)

HSP 1 Score: 79.7 bits (195), Expect = 3.270e-16
Identity = 48/129 (37.21%), Postives = 74/129 (57.36%), Query Frame = 1
Query:    4 ATKVMENLWLSGQEVTADKASLQREGVTHIVNCSIHLTNFFPQDFSYHRVRWADKSGQDIDPAVLEAAFRHIDAARSAGNACLVHCRAGMSRSCSLVVGYLMQLGEGMSLVAALQFCQAKRRQVQRTNG 390
            A ++   L+LS +   A+   L + G+THIVN +  + N+FP  F+Y R++ +D   ++I     E     I+ AR A   CLVHC AG+SRS ++V+ YL++  E MS+  AL + Q +R  V   NG
Sbjct:   14 ANQIKPYLYLSSEYAAANLELLLQRGITHIVNAATAVDNYFPNLFTYKRIQISDLPTENIKQYFGEC-NDFINEARYANGKCLVHCNAGVSRSATIVMAYLIKY-ECMSVEHALSYVQERRSIVSPNNG 140          
BLAST of mRNA_H-elongata_contig112962.1053.1 vs. uniprot
Match: A0A2R5LGN0_9ACAR (Putative dual specificity phosphatase (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LGN0_9ACAR)

HSP 1 Score: 80.1 bits (196), Expect = 6.900e-16
Identity = 50/130 (38.46%), Postives = 67/130 (51.54%), Query Frame = 1
Query:    1 KATKVMENLWLSGQEVTADKASLQREGVTHIVNCSIHLTNFFPQDFSYHRVRWADKSGQDIDPAVLEAAFRHIDAARSAGNACLVHCRAGMSRSCSLVVGYLMQLGEGMSLVAALQFCQAKRRQVQRTNG 390
            +  +V+  L++  Q+V ADK  L   G+TH+VN +  + NF   D  Y R    D    ++ P + E     ID A S G   LVHC AG+SRS SLVV YLM L +GM    AL   Q  R   +  +G
Sbjct:   65 QVAEVIPGLYVGSQDVAADKNLLVSRGITHVVNAATFIPNFHEPDLVYKRFEVLDLPDSNLHP-LFEPCCDFIDEALSGGGGVLVHCNAGVSRSVSLVVAYLM-LRKGMRFANALARVQEVRPVARPNDG 192          
BLAST of mRNA_H-elongata_contig112962.1053.1 vs. uniprot
Match: A0A6G0X4Z4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4Z4_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.010e-15
Identity = 50/136 (36.76%), Postives = 74/136 (54.41%), Query Frame = 1
Query:    7 TKVMENLWLSGQEVTADKASLQREGVTHIVNCSIHLTNFF----------------PQDFSYHRVRWADKSGQDIDPAVLEAAFRHIDAARSAGNACLVHCRAGMSRSCSLVVGYLMQLGEGMSLVAALQFCQAKR 366
            TK+++ L++ G+E   D A+L+   VTHIVNC+  + NFF                P   SY RV  +D     ID +  ++ F  I  AR +G  CLVHC  GMSRS + ++ YL+   E MS++ AL++ +A R
Sbjct:   24 TKILDGLYVGGRESVDDLAALEMLAVTHIVNCTEDIPNFFYGEYEPMPCTTSSTNDPGTISYLRVPISDDPDVAID-SFFQSVFGFIQNARDSGKVCLVHCSQGMSRSPTFILAYLVAR-ENMSVLEALRYTRALR 157          
BLAST of mRNA_H-elongata_contig112962.1053.1 vs. uniprot
Match: A0A1V9XKK9_9ACAR (Dual specificity protein phosphatase 19-like n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9XKK9_9ACAR)

HSP 1 Score: 79.3 bits (194), Expect = 1.410e-15
Identity = 47/126 (37.30%), Postives = 73/126 (57.94%), Query Frame = 1
Query:   13 VMENLWLSGQEVTADKASLQREGVTHIVNCSIHLTNFFPQDFSYHRVRWADKSGQDIDPAVLEAAFRHIDAARSAGNACLVHCRAGMSRSCSLVVGYLMQLGEGMSLVAALQFCQAKRRQVQRTNG 390
            V   L++  Q+V A+K  L+ + V HIVN +  + N FP+DF Y ++   D   QDI  +V E+ F  ID A +AG +  VHC AG+SRS ++ + YL+   + M L  AL   +++R  V+  +G
Sbjct:   70 VAPGLYVGSQDVAAEKEILKSKNVLHIVNAASGIGNHFPEDFRYMKLNILDLPEQDIK-SVFESCFAFIDEALAAGGSTFVHCNAGVSRSSTICIAYLISR-QRMRLNRALNKVRSERPIVRPNDG 193          
BLAST of mRNA_H-elongata_contig112962.1053.1 vs. uniprot
Match: A0A804JYP2_MUSAM (Uncharacterized protein n=3 Tax=Musa TaxID=4640 RepID=A0A804JYP2_MUSAM)

HSP 1 Score: 78.2 bits (191), Expect = 2.110e-15
Identity = 50/133 (37.59%), Postives = 73/133 (54.89%), Query Frame = 1
Query:   10 KVMENLWLSGQEVTADKASLQREGVTHIVNCSIHLTNFFPQDFSYHRVRWADKSGQDIDPAVLEAAFRHIDAARSAGNACLVHCRAGMSRSCSLVVGYLMQLGEGMSLVAALQFCQAKRRQVQRTNGRLNILS 408
            ++ E L+L       +K++L+   +THI+  +  L   FP DF Y ++   D  G ++D    +  F  ID ARSAG   LVHC AGMSRS ++VV YLM+    MSL  AL   ++KR  +   +G L  L+
Sbjct:   33 QIEEGLFLGSVGAALNKSALKDLNITHILTVAKSLDPAFPIDFVYKKIDVFDTPGTELDK-YFDECFSFIDEARSAGGGVLVHCFAGMSRSVTVVVAYLMKKHR-MSLSDALALVRSKRPHIAPNHGFLTQLA 163          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112962.1053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZGG2_9STRA5.960e-2142.86Protein-tyrosine phosphatase-like protein n=1 Tax=... [more]
A0A835ZD16_9STRA1.330e-2035.97Protein-tyrosine phosphatase-like protein n=1 Tax=... [more]
A0A0G4GLF8_VITBC7.670e-1837.40Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A6A4VUY9_AMPAM1.570e-1741.74Dual specificity protein phosphatase 19 n=1 Tax=Am... [more]
A0A024TLS3_9STRA1.130e-1635.34Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A5S6QDX0_TRIMR3.270e-1637.21Protein-tyrosine-phosphatase n=1 Tax=Trichuris mur... [more]
A0A2R5LGN0_9ACAR6.900e-1638.46Putative dual specificity phosphatase (Fragment) n... [more]
A0A6G0X4Z4_9STRA1.010e-1536.76Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9XKK9_9ACAR1.410e-1537.30Dual specificity protein phosphatase 19-like n=1 T... [more]
A0A804JYP2_MUSAM2.110e-1537.59Uncharacterized protein n=3 Tax=Musa TaxID=4640 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112962contigH-elongata_contig112962:262..1271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue4.2e-12
Seed eggNOG ortholog157072.XP_008877060.1
KEGG koko:K04459,ko:K14165
KEGG Pathwayko04010,map04010
EggNOG free text desc.protein tyrosine/serine/threonine phosphatase activity
EggNOG OGsCOG2453@1,KOG1718@2759
EC3.1.3.16,3.1.3.48
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Exons2
Model size411
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112962.1053.1prot_H-elongata_contig112962.1053.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112962 277..1271 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929650.5076492-UTR-H-elongata_contig112962:261..2761622929650.5076492-UTR-H-elongata_contig112962:261..276Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112962 262..276 +
1691679105.5023203-UTR-H-elongata_contig112962:261..2761691679105.5023203-UTR-H-elongata_contig112962:261..276Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112962 262..276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929650.52538-CDS-H-elongata_contig112962:276..4381622929650.52538-CDS-H-elongata_contig112962:276..438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112962 277..438 +
1691679105.5194335-CDS-H-elongata_contig112962:276..4381691679105.5194335-CDS-H-elongata_contig112962:276..438Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112962 277..438 +
1622929650.5459373-CDS-H-elongata_contig112962:1037..12711622929650.5459373-CDS-H-elongata_contig112962:1037..1271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112962 1038..1271 +
1691679105.5289326-CDS-H-elongata_contig112962:1037..12711691679105.5289326-CDS-H-elongata_contig112962:1037..1271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112962 1038..1271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112962.1053.1

>prot_H-elongata_contig112962.1053.1 ID=prot_H-elongata_contig112962.1053.1|Name=mRNA_H-elongata_contig112962.1053.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MENLWLSGQEVTADKASLQREGVTHIVNCSIHLTNFFPQDFSYHRVRWAD
KSGQDIDPAVLEAAFRHIDAARSAGNACLVHCRAGMSRSCSLVVGYLMQL
GEGMSLVAALQFCQAKRRQVQRTNGRLNILS*
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mRNA from alignment at H-elongata_contig112962:262..1271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112962.1053.1 ID=mRNA_H-elongata_contig112962.1053.1|Name=mRNA_H-elongata_contig112962.1053.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1010bp|location=Sequence derived from alignment at H-elongata_contig112962:262..1271+ (Himanthalia elongata Himel1 dioecious)
AAGGCTACGAAGGTTATGGAAAACCTATGGCTGAGCGGACAAGAGGTGAC CGCGGACAAGGCGTCGCTGCAGCGAGAAGGTGTGACGCACATCGTGAACT GCTCCATCCACTTGACGAACTTCTTCCCCCAAGACTTCTCCTACCACCGT GTGCGCTGGGCGGACAAAAGCGGCCAGGTAGAGCATGGTAGTAAAGGGGA GGGTAGGCTCTGTGGCTGGTGTCCTCGAAGTTTGCCGCCTGAGTCGTGCA TTAGTTGCATTTGGGCTTTGGTTGGTCTTGAACCGCTGGTTCTTTTTTCT GGTAAAAAACAAGGCCTTAAGTCAAGGCAAACTGGAGCGCCTCCTCTCTG TGACATGTTCATGACCACCGTGTCGCGTACCACTAGCGTTGCTGAGGAGG GGGAGAGGGTACCCACCCCCCCCTTCCTTGCCGCCAACATCTCTCGCTCG AAATTTGAGTGAAAATATGTCTATTAATAGTACATGACGAGTGTAGTTTT GAAATTGAGTGGTCTCAGCGAAGAATAACGTAGCGAAAGCAAGTCGTTGC GGCGCGCCAACACGAGCGGATCCGGTGTAGCACGGCAAGACGTTTCGAAA CCTCCGCATATTGTCCTTGCTCATGTTTCGTTTGCGCGCTGCCAGAGAGG CTAATCGGTCGTGCGGTGAACATGAAATCTCGACATAGGGTCTCACATAT TAGAAATACATAAATGTATGCAGTATATATATATATATATAATAGCGGTT GTAACGTTATAACGCTATCACGATAGGATATCGACCCCGCTGTACTGGAG GCGGCTTTCCGGCATATCGACGCGGCGCGCTCAGCGGGAAACGCCTGTTT GGTGCACTGCCGGGCGGGCATGAGCAGGTCTTGCTCGCTAGTCGTCGGAT ACCTCATGCAGCTCGGAGAGGGTATGTCGCTTGTGGCCGCGCTACAGTTC TGCCAGGCAAAGCGTCGACAGGTGCAACGAACGAACGGCCGACTGAATAT ATTGTCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig112962:262..1271+

>mRNA_H-elongata_contig112962.1053.1 ID=mRNA_H-elongata_contig112962.1053.1|Name=mRNA_H-elongata_contig112962.1053.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig112962:262..1271+ (Himanthalia elongata Himel1 dioecious)
ATGGAAAACCTATGGCTGAGCGGACAAGAGGTGACCGCGGACAAGGCGTC
GCTGCAGCGAGAAGGTGTGACGCACATCGTGAACTGCTCCATCCACTTGA
CGAACTTCTTCCCCCAAGACTTCTCCTACCACCGTGTGCGCTGGGCGGAC
AAAAGCGGCCAGATGGAAAACCTATGGCTGAGCGGACAAGAGGTGACCGC
GGACAAGGCGTCGCTGCAGCGAGAAGGTGTGACGCACATCGTGAACTGCT
CCATCCACTTGACGAACTTCTTCCCCCAAGACTTCTCCTACCACCGTGTG
CGCTGGGCGGACAAAAGCGGCCAGGATATCGACCCCGCTGTACTGGAGGC
GGCTTTCCGGCATATCGACGCGGCGCGCTCAGCGGGAAACGCCTGTTTGG
TGCACTGCCGGGCGGGCATGAGCAGGTCTTGCTCGCTAGTCGTCGGATAC
CTCATGCAGCTCGGAGAGGGTATGTCGCTTGTGGCCGCGCTACAGTTCTG
CCAGGCAAAGCGTCGACAGGTGCAACGAACGAACGGCCGACTGAATATAT
TGTCTTGAGATATCGACCCCGCTGTACTGGAGGCGGCTTTCCGGCATATC
GACGCGGCGCGCTCAGCGGGAAACGCCTGTTTGGTGCACTGCCGGGCGGG
CATGAGCAGGTCTTGCTCGCTAGTCGTCGGATACCTCATGCAGCTCGGAG
AGGGTATGTCGCTTGTGGCCGCGCTACAGTTCTGCCAGGCAAAGCGTCGA
CAGGTGCAACGAACGAACGGCCGACTGAATATATTGTCTTGA
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