mRNA_H-elongata_contig112851.1051.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig112851.1051.1 vs. uniprot
Match: A0A6H5K6H4_9PHAE (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H4_9PHAE) HSP 1 Score: 141 bits (355), Expect = 3.670e-37 Identity = 70/117 (59.83%), Postives = 86/117 (73.50%), Query Frame = 2
Query: 5 GSALYFFYFMALGSILPFLPLIWRSKGLSGHQVGVLGAIQPICAFFVTPIICAFADRHSIQQQVLYAAMILYATLRPSLLMVGSFLAVGVVETASAIFKSPVVSLIDSASRHFNGSD 355
LYFF FMA G + PF+PLIWRSKGLS HQVG+LGAI+P+ +FFV P++CAFADRHSI QQV+Y A+ LY RPS+L G+FLAV VE + + SP+ SLIDS+ R G D
Sbjct: 9 ACVLYFFLFMAHGCVAPFMPLIWRSKGLSEHQVGILGAIRPVASFFVNPVMCAFADRHSIHQQVVYTALFLYVVTRPSVLFAGTFLAVAAVEASCSFSTSPIGSLIDSSIRQAFGGD 125
BLAST of mRNA_H-elongata_contig112851.1051.1 vs. uniprot
Match: D7G0X8_ECTSI (Probable maltose permease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X8_ECTSI) HSP 1 Score: 119 bits (299), Expect = 2.050e-30 Identity = 59/116 (50.86%), Postives = 81/116 (69.83%), Query Frame = 2
Query: 5 GSALYFFYFMALGSILPFLPLIWRSKGLSGHQVGVLGAIQPICAFFVTPIICAFADRHSIQQQVLYAAMILYATLRPSLLMVGSFLAVGVVETASAIFKSPVVSLIDSASRHFNGS 352
G ALYFF F + GS+ PFLPLIWRSKGL+ +VG+L A++PI P ICAF D+H +QQ LY ++L+A ++L GSF A+ VE +S++ +SP+VSLID+A R+ GS
Sbjct: 130 GCALYFFLFASFGSLTPFLPLIWRSKGLAATEVGLLAAVRPIAVILAGPTICAFTDKHGVQQTALYVLLLLFAITGSTVLFAGSFFALAAVEISSSVSRSPIVSLIDAAVRNAFGS 245
BLAST of mRNA_H-elongata_contig112851.1051.1 vs. uniprot
Match: A0A6H5JEM5_9PHAE (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM5_9PHAE) HSP 1 Score: 100 bits (250), Expect = 9.010e-23 Identity = 51/85 (60.00%), Postives = 66/85 (77.65%), Query Frame = 2
Query: 101 VGVLGAIQPICAFFVTPIICAFADRHSIQQQVLYAAMILYATLRPSLLMVGSFLAVGVVETASAIFKSPVVSLIDSASRHFNGSD 355
VG+LGAI P+ +FF TP+ CAFADRH+IQQQV+Y A ILYA RPS+L+ SFLAV VE + ++ +SPV SL+D+A RH +G D
Sbjct: 10 VGLLGAINPVASFFWTPVACAFADRHNIQQQVVYVASILYAVTRPSVLLASSFLAVAAVEISVSVSESPVGSLVDAAIRHASGGD 94
BLAST of mRNA_H-elongata_contig112851.1051.1 vs. uniprot
Match: D7G3W1_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W1_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 2.300e-16 Identity = 35/45 (77.78%), Postives = 42/45 (93.33%), Query Frame = 2
Query: 59 LPLIWRSKGLSGHQVGVLGAIQPICAFFVTPIICAFADRHSIQQQ 193
+PLIWRSKGLS HQVG+LGAI+P+ +FFVTP++CAFADRHSI QQ
Sbjct: 1 MPLIWRSKGLSEHQVGILGAIRPVASFFVTPVMCAFADRHSIHQQ 45
BLAST of mRNA_H-elongata_contig112851.1051.1 vs. uniprot
Match: D7G4M5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M5_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 9.650e-14 Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 2
Query: 5 GSALYFFYFMALGSILPFLPLIWRSKGLSGHQVGVLGAIQPICAFFVTPIICAFADRHSIQQ 190
G ALYFF FM+LGS++PF+P+IWRSK LS +VG+L A++PI P+IC+ ++ +QQ
Sbjct: 13 GCALYFFLFMSLGSVMPFVPVIWRSKRLSETEVGLLAAVRPIALLLAGPVICSLIGKYGVQQ 74
BLAST of mRNA_H-elongata_contig112851.1051.1 vs. uniprot
Match: A7RXM5_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RXM5_NEMVE) HSP 1 Score: 65.1 bits (157), Expect = 7.220e-10 Identity = 29/69 (42.03%), Postives = 50/69 (72.46%), Query Frame = 2
Query: 8 SALYFFYFMALGSILPFLPLIWRSKGLSGHQVGVLGAIQPICAFFVTPIICAFADRHSIQQQVLYAAMI 214
+A Y+ ++ ALGS+LPFL L +RS GLS Q+GVLG I+P+ A P+ C ++++++++ +L A++I
Sbjct: 20 NAYYYLFYAALGSLLPFLTLYYRSLGLSAWQIGVLGGIRPLIALLSGPLWCFISNQYNVRKLILVASLI 88
BLAST of mRNA_H-elongata_contig112851.1051.1 vs. uniprot
Match: X1C9Y1_9ZZZZ (MFS_1_like domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1C9Y1_9ZZZZ) HSP 1 Score: 57.0 bits (136), Expect = 2.780e-8 Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 2
Query: 11 ALYFFYFMALGSILPFLPLIWRSKGLSGHQVGVLGAIQPICAFFVTPIICAFADRHSIQQQVLYAAM 211
A+YFFY+ A S+LPFL + + S GLSG+Q+G L + P+ A F P AD +++L AM
Sbjct: 6 AIYFFYYGATASLLPFLAIYYESLGLSGYQIGFLAGLMPLIALFSAPFWGGLADATQKHKRLLLLAM 72
BLAST of mRNA_H-elongata_contig112851.1051.1 vs. uniprot
Match: UPI000C03AF9D (major facilitator superfamily domain-containing protein 6-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C03AF9D) HSP 1 Score: 58.9 bits (141), Expect = 1.010e-7 Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 2
Query: 17 YFFYFMALGSILPFLPLIWRSKGLSGHQVGVLGAIQPICAFFVTPIICAFADR 175
YFFYF ALG+ILPFLPL ++ GL + G++ IQP +F TP+ A +D+
Sbjct: 40 YFFYFAALGAILPFLPLFYKQLGLPAKKAGIISGIQPFISFAFTPMWGALSDK 92
BLAST of mRNA_H-elongata_contig112851.1051.1 vs. uniprot
Match: A0A3N5S2W3_9CHLR (MFS transporter (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5S2W3_9CHLR) HSP 1 Score: 58.2 bits (139), Expect = 1.780e-7 Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = 2
Query: 5 GSALYFFYFMALGSILPFLPLIWRSKGLSGHQVGVLGAIQPICAFFVTPIICAFADRHSIQQQVLYAAMILYATLRPSLLMVGSFLAVGVVETASAIFKSPVVSLIDS 328
+YF Y++ALGS+LPF+ L + GL+G Q+GVL A+ + T + A AD+ + +++L AA++L + FL + V A AI SP+V L+DS
Sbjct: 13 AGGMYFGYYLALGSLLPFISLYYERIGLTGVQIGVLTALPVLILSSTTLLWGAIADKFRLHKKILSAALLLTPLAVLIVPQTIEFLPLIPVILAYAISTSPIVPLMDS 120
BLAST of mRNA_H-elongata_contig112851.1051.1 vs. uniprot
Match: UPI000A2A5D21 (major facilitator superfamily domain-containing protein 6 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A5D21) HSP 1 Score: 58.2 bits (139), Expect = 1.910e-7 Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 2
Query: 8 SALYFFYFMALGSILPFLPLIWR-SKGLSGHQVGVLGAIQPICAFFVTPIICAFADRHSIQQQVLYAAMILYAT 226
A YFFYF ALGS+ P++PL ++ S + H VG++ I+P C F PI+ AD++ + VL A+ Y T
Sbjct: 59 KAFYFFYFAALGSLQPYIPLYFKHSLQMPAHLVGIVIGIRPFCLFVSAPILGTIADKYRKVRAVLVVALFSYIT 132 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112851.1051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig112851.1051.1 >prot_H-elongata_contig112851.1051.1 ID=prot_H-elongata_contig112851.1051.1|Name=mRNA_H-elongata_contig112851.1051.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp SRIRAVFFLLHGAWEYLAILALNMAKQGIIRPSGRRARGDTAHMRFLRHAback to top mRNA from alignment at H-elongata_contig112851:237..1234- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig112851.1051.1 ID=mRNA_H-elongata_contig112851.1051.1|Name=mRNA_H-elongata_contig112851.1051.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=998bp|location=Sequence derived from alignment at H-elongata_contig112851:237..1234- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig112851:237..1234- >mRNA_H-elongata_contig112851.1051.1 ID=mRNA_H-elongata_contig112851.1051.1|Name=mRNA_H-elongata_contig112851.1051.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig112851:237..1234- (Himanthalia elongata Himel1 dioecious)back to top |