mRNA_H-elongata_contig112851.1051.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112851.1051.1
Unique NamemRNA_H-elongata_contig112851.1051.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig112851.1051.1 vs. uniprot
Match: A0A6H5K6H4_9PHAE (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H4_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 3.670e-37
Identity = 70/117 (59.83%), Postives = 86/117 (73.50%), Query Frame = 2
Query:    5 GSALYFFYFMALGSILPFLPLIWRSKGLSGHQVGVLGAIQPICAFFVTPIICAFADRHSIQQQVLYAAMILYATLRPSLLMVGSFLAVGVVETASAIFKSPVVSLIDSASRHFNGSD 355
               LYFF FMA G + PF+PLIWRSKGLS HQVG+LGAI+P+ +FFV P++CAFADRHSI QQV+Y A+ LY   RPS+L  G+FLAV  VE + +   SP+ SLIDS+ R   G D
Sbjct:    9 ACVLYFFLFMAHGCVAPFMPLIWRSKGLSEHQVGILGAIRPVASFFVNPVMCAFADRHSIHQQVVYTALFLYVVTRPSVLFAGTFLAVAAVEASCSFSTSPIGSLIDSSIRQAFGGD 125          
BLAST of mRNA_H-elongata_contig112851.1051.1 vs. uniprot
Match: D7G0X8_ECTSI (Probable maltose permease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X8_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 2.050e-30
Identity = 59/116 (50.86%), Postives = 81/116 (69.83%), Query Frame = 2
Query:    5 GSALYFFYFMALGSILPFLPLIWRSKGLSGHQVGVLGAIQPICAFFVTPIICAFADRHSIQQQVLYAAMILYATLRPSLLMVGSFLAVGVVETASAIFKSPVVSLIDSASRHFNGS 352
            G ALYFF F + GS+ PFLPLIWRSKGL+  +VG+L A++PI      P ICAF D+H +QQ  LY  ++L+A    ++L  GSF A+  VE +S++ +SP+VSLID+A R+  GS
Sbjct:  130 GCALYFFLFASFGSLTPFLPLIWRSKGLAATEVGLLAAVRPIAVILAGPTICAFTDKHGVQQTALYVLLLLFAITGSTVLFAGSFFALAAVEISSSVSRSPIVSLIDAAVRNAFGS 245          
BLAST of mRNA_H-elongata_contig112851.1051.1 vs. uniprot
Match: A0A6H5JEM5_9PHAE (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM5_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 9.010e-23
Identity = 51/85 (60.00%), Postives = 66/85 (77.65%), Query Frame = 2
Query:  101 VGVLGAIQPICAFFVTPIICAFADRHSIQQQVLYAAMILYATLRPSLLMVGSFLAVGVVETASAIFKSPVVSLIDSASRHFNGSD 355
            VG+LGAI P+ +FF TP+ CAFADRH+IQQQV+Y A ILYA  RPS+L+  SFLAV  VE + ++ +SPV SL+D+A RH +G D
Sbjct:   10 VGLLGAINPVASFFWTPVACAFADRHNIQQQVVYVASILYAVTRPSVLLASSFLAVAAVEISVSVSESPVGSLVDAAIRHASGGD 94          
BLAST of mRNA_H-elongata_contig112851.1051.1 vs. uniprot
Match: D7G3W1_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W1_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.300e-16
Identity = 35/45 (77.78%), Postives = 42/45 (93.33%), Query Frame = 2
Query:   59 LPLIWRSKGLSGHQVGVLGAIQPICAFFVTPIICAFADRHSIQQQ 193
            +PLIWRSKGLS HQVG+LGAI+P+ +FFVTP++CAFADRHSI QQ
Sbjct:    1 MPLIWRSKGLSEHQVGILGAIRPVASFFVTPVMCAFADRHSIHQQ 45          
BLAST of mRNA_H-elongata_contig112851.1051.1 vs. uniprot
Match: D7G4M5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M5_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 9.650e-14
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 2
Query:    5 GSALYFFYFMALGSILPFLPLIWRSKGLSGHQVGVLGAIQPICAFFVTPIICAFADRHSIQQ 190
            G ALYFF FM+LGS++PF+P+IWRSK LS  +VG+L A++PI      P+IC+   ++ +QQ
Sbjct:   13 GCALYFFLFMSLGSVMPFVPVIWRSKRLSETEVGLLAAVRPIALLLAGPVICSLIGKYGVQQ 74          
BLAST of mRNA_H-elongata_contig112851.1051.1 vs. uniprot
Match: A7RXM5_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RXM5_NEMVE)

HSP 1 Score: 65.1 bits (157), Expect = 7.220e-10
Identity = 29/69 (42.03%), Postives = 50/69 (72.46%), Query Frame = 2
Query:    8 SALYFFYFMALGSILPFLPLIWRSKGLSGHQVGVLGAIQPICAFFVTPIICAFADRHSIQQQVLYAAMI 214
            +A Y+ ++ ALGS+LPFL L +RS GLS  Q+GVLG I+P+ A    P+ C  ++++++++ +L A++I
Sbjct:   20 NAYYYLFYAALGSLLPFLTLYYRSLGLSAWQIGVLGGIRPLIALLSGPLWCFISNQYNVRKLILVASLI 88          
BLAST of mRNA_H-elongata_contig112851.1051.1 vs. uniprot
Match: X1C9Y1_9ZZZZ (MFS_1_like domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1C9Y1_9ZZZZ)

HSP 1 Score: 57.0 bits (136), Expect = 2.780e-8
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 2
Query:   11 ALYFFYFMALGSILPFLPLIWRSKGLSGHQVGVLGAIQPICAFFVTPIICAFADRHSIQQQVLYAAM 211
            A+YFFY+ A  S+LPFL + + S GLSG+Q+G L  + P+ A F  P     AD     +++L  AM
Sbjct:    6 AIYFFYYGATASLLPFLAIYYESLGLSGYQIGFLAGLMPLIALFSAPFWGGLADATQKHKRLLLLAM 72          
BLAST of mRNA_H-elongata_contig112851.1051.1 vs. uniprot
Match: UPI000C03AF9D (major facilitator superfamily domain-containing protein 6-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C03AF9D)

HSP 1 Score: 58.9 bits (141), Expect = 1.010e-7
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 2
Query:   17 YFFYFMALGSILPFLPLIWRSKGLSGHQVGVLGAIQPICAFFVTPIICAFADR 175
            YFFYF ALG+ILPFLPL ++  GL   + G++  IQP  +F  TP+  A +D+
Sbjct:   40 YFFYFAALGAILPFLPLFYKQLGLPAKKAGIISGIQPFISFAFTPMWGALSDK 92          
BLAST of mRNA_H-elongata_contig112851.1051.1 vs. uniprot
Match: A0A3N5S2W3_9CHLR (MFS transporter (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5S2W3_9CHLR)

HSP 1 Score: 58.2 bits (139), Expect = 1.780e-7
Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = 2
Query:    5 GSALYFFYFMALGSILPFLPLIWRSKGLSGHQVGVLGAIQPICAFFVTPIICAFADRHSIQQQVLYAAMILYATLRPSLLMVGSFLAVGVVETASAIFKSPVVSLIDS 328
               +YF Y++ALGS+LPF+ L +   GL+G Q+GVL A+  +     T +  A AD+  + +++L AA++L       +     FL +  V  A AI  SP+V L+DS
Sbjct:   13 AGGMYFGYYLALGSLLPFISLYYERIGLTGVQIGVLTALPVLILSSTTLLWGAIADKFRLHKKILSAALLLTPLAVLIVPQTIEFLPLIPVILAYAISTSPIVPLMDS 120          
BLAST of mRNA_H-elongata_contig112851.1051.1 vs. uniprot
Match: UPI000A2A5D21 (major facilitator superfamily domain-containing protein 6 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A5D21)

HSP 1 Score: 58.2 bits (139), Expect = 1.910e-7
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 2
Query:    8 SALYFFYFMALGSILPFLPLIWR-SKGLSGHQVGVLGAIQPICAFFVTPIICAFADRHSIQQQVLYAAMILYAT 226
             A YFFYF ALGS+ P++PL ++ S  +  H VG++  I+P C F   PI+   AD++   + VL  A+  Y T
Sbjct:   59 KAFYFFYFAALGSLQPYIPLYFKHSLQMPAHLVGIVIGIRPFCLFVSAPILGTIADKYRKVRAVLVVALFSYIT 132          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112851.1051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5K6H4_9PHAE3.670e-3759.83MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
D7G0X8_ECTSI2.050e-3050.86Probable maltose permease n=1 Tax=Ectocarpus silic... [more]
A0A6H5JEM5_9PHAE9.010e-2360.00MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
D7G3W1_ECTSI2.300e-1677.78MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4M5_ECTSI9.650e-1451.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A7RXM5_NEMVE7.220e-1042.03Predicted protein n=1 Tax=Nematostella vectensis T... [more]
X1C9Y1_9ZZZZ2.780e-841.79MFS_1_like domain-containing protein (Fragment) n=... [more]
UPI000C03AF9D1.010e-749.06major facilitator superfamily domain-containing pr... [more]
A0A3N5S2W3_9CHLR1.780e-736.11MFS transporter (Fragment) n=1 Tax=Chloroflexi bac... [more]
UPI000A2A5D211.910e-740.54major facilitator superfamily domain-containing pr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112851contigH-elongata_contig112851:237..1234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size360
Cds size357
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112851.1051.1prot_H-elongata_contig112851.1051.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112851 238..1234 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929650.3279688-CDS-H-elongata_contig112851:237..4011622929650.3279688-CDS-H-elongata_contig112851:237..401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112851 238..401 -
1691679105.4389212-CDS-H-elongata_contig112851:237..4011691679105.4389212-CDS-H-elongata_contig112851:237..401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112851 238..401 -
1622929650.345457-CDS-H-elongata_contig112851:613..7141622929650.345457-CDS-H-elongata_contig112851:613..714Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112851 614..714 -
1691679105.4502847-CDS-H-elongata_contig112851:613..7141691679105.4502847-CDS-H-elongata_contig112851:613..714Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112851 614..714 -
1622929650.3607738-CDS-H-elongata_contig112851:1142..12341622929650.3607738-CDS-H-elongata_contig112851:1142..1234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112851 1143..1234 -
1691679105.4669049-CDS-H-elongata_contig112851:1142..12341691679105.4669049-CDS-H-elongata_contig112851:1142..1234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112851 1143..1234 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112851.1051.1

>prot_H-elongata_contig112851.1051.1 ID=prot_H-elongata_contig112851.1051.1|Name=mRNA_H-elongata_contig112851.1051.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
SRIRAVFFLLHGAWEYLAILALNMAKQGIIRPSGRRARGDTAHMRFLRHA
DHLRIRRQAQHSATGAVRGDDFVCYSPAVLAYGREFLGSRSRRNGERHLQ
ESRCQPYRFRLQTLQWKRR
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mRNA from alignment at H-elongata_contig112851:237..1234-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112851.1051.1 ID=mRNA_H-elongata_contig112851.1051.1|Name=mRNA_H-elongata_contig112851.1051.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=998bp|location=Sequence derived from alignment at H-elongata_contig112851:237..1234- (Himanthalia elongata Himel1 dioecious)
TCGAGGATCCGCGCTGTATTTTTTCTACTTCATGGCGCTTGGGAGTATCT TGCCATTCTTGCCCTTAATATGGCGAAGCAAGGGATTATCCGGTGAGGTG TAAACCCGTCCATCGAAGAGGGCATACATTGTGACACACGTCGTGCAGTA CCGTCACCATGGCGAGAAAGTTTGTTTGAAAAGTAGAGCACCTTCCTAAG GTGGCGTCCGGAATTCGCTCGGGGGGAAAAAATAGTCGTCGAAATGCCTC AATCGAGTGTCGTTATCGAACGCAAAACCACTTCCCCTCAAAGCAAAAGG GGTAGCAGCTGTAGTGCGGGATGGTAGGAGTCCAATACACGTGATGATTG TGGCATTCTTGGCTACGCTGTTGTTCCGCTTGCTACGTAAGAGCTCAATC GCTCGCCCTGGAGAAGATCCACAATGAATGCTGCAAACAATCGTCCTTGT CGATCACTTACATTACTTCATATGTCCTCCATTCGCGATAACTCTCGCAA ATATGCGGCATTGCTCAAAGGCCATCAGGTCGGCGTGCTCGGGGCGATAC AGCCCATATGCGCTTTCTTCGTCACGCCGATCATCTGCGCATTCGCAGAC AGGCACAGCATTCAGCAACAGGTGCAATGAGGATGAGGATGAGGCCGGGT GACCACTACTCGAGCTTGAAGGCAGTTTGTCTCCCAAGTCAGAGAGTGTG TGTGATTGTGTGTGTTTTTGCTATTAGTCACGACTCAGCCTTCTTCTGAG ATATTTTGAAACCAGAGCCCAACGCGCTGCAACACCTGGGTGATACCCCG ACCTGATTTACGCCGGCGCGATCACTTGCTAAGGTGCTGTACGCGGCGAT GATTTTGTATGCTACTCTCCGGCCGTCCTTGCTTATGGTCGGGAGTTTCT TGGCAGTCGGAGTCGTAGAAACGGCGAGCGCCATCTTCAAGAGTCCCGTT GTCAGCCTTATAGATTCCGCCTCCAGACACTTCAATGGAAGCGACGGG
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Coding sequence (CDS) from alignment at H-elongata_contig112851:237..1234-

>mRNA_H-elongata_contig112851.1051.1 ID=mRNA_H-elongata_contig112851.1051.1|Name=mRNA_H-elongata_contig112851.1051.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig112851:237..1234- (Himanthalia elongata Himel1 dioecious)
TCGAGGATCCGCGCTGTATTTTTTCTACTTCATGGCGCTTGGGAGTATCT
TGCCATTCTTGCCCTTAATATGGCGAAGCAAGGGATTATCCGTCGAGGAT
CCGCGCTGTATTTTTTCTACTTCATGGCGCTTGGGAGTATCTTGCCATTC
TTGCCCTTAATATGGCGAAGCAAGGGATTATCCGGCCATCAGGTCGGCGT
GCTCGGGGCGATACAGCCCATATGCGCTTTCTTCGTCACGCCGATCATCT
GCGCATTCGCAGACAGGCACAGCATTCAGCAACAGGCCATCAGGTCGGCG
TGCTCGGGGCGATACAGCCCATATGCGCTTTCTTCGTCACGCCGATCATC
TGCGCATTCGCAGACAGGCACAGCATTCAGCAACAGGTGCTGTACGCGGC
GATGATTTTGTATGCTACTCTCCGGCCGTCCTTGCTTATGGTCGGGAGTT
TCTTGGCAGTCGGAGTCGTAGAAACGGCGAGCGCCATCTTCAAGAGTCCC
GTTGTCAGCCTTATAGATTCCGCCTCCAGACACTTCAATGGAAGCGACGG
GTGCTGTACGCGGCGATGATTTTGTATGCTACTCTCCGGCCGTCCTTGCT
TATGGTCGGGAGTTTCTTGGCAGTCGGAGTCGTAGAAACGGCGAGCGCCA
TCTTCAAGAGTCCCGTTGTCAGCCTTATAGATTCCGCCTCCAGACACTTC
AATGGAAGCGACGG
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