mRNA_H-elongata_contig11280.1046.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11280.1046.1
Unique NamemRNA_H-elongata_contig11280.1046.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11280.1046.1 vs. uniprot
Match: D7FPV0_ECTSI (SET domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPV0_ECTSI)

HSP 1 Score: 461 bits (1185), Expect = 8.290e-157
Identity = 236/344 (68.60%), Postives = 273/344 (79.36%), Query Frame = 2
Query:    2 DGQKSAGRSLTLTRACFTVLRLLHERGLGKASPFHAYLGVLPFDHRLPMEWNESEVELLKGTSAESLVGVASLDRQFEAFQRVVMLHPTMWDSSVCSKTAFAKGVNWVRSRGFTAFGDPQMIPGADMFNHDPNKQAVQIGTDGDDHFVMRTVHPVKAGQEVFSSFGNLSNAQLLNSYGFVLPGNPFDNVLIPTKLAVDTCHDTFLNIDIEGGKLGKEAAKSTWERRLQMVMSN--AGESEDEAFVIAKYDLVPEKLVDTVQLLTMSNDEEVAYATIAAVAQAKMEQYSPLLDGGKISADSSEKAEKVDRSIGADARVVAEMLVSEEKSILVDLKLQLMGAIMQD 1027
             G+ S   +  LTRAC TVLRLLHERGLG++SPFH+YL VLP DHRLP+EW E+EV LL+GTSAE LVG  SLD QFEAFQ VV  HPT+W+ SVC+K AFAKGVNWVRSRGFT  GDP MIPGADMFNHDPNKQ+VQIGTDG++HFVM+TV PVKAG+EVFSSFG++SNAQLLNSYGFVLPGN FD VLIPT+L V+TC+ TF  + +E  KLG+   K TWE+RL MV SN  A E E EAFV++KYDL+PE L D VQ+LTMSNDEEVAYATIAAV+QAKM QYSPLL   K +A           +IGADAR +A MLV+EEK +L DL+LQLM  I+ D
Sbjct:  119 QGESSKPPAPRLTRACLTVLRLLHERGLGESSPFHSYLSVLPQDHRLPLEWTEAEVGLLQGTSAEPLVGAGSLDSQFEAFQSVVAQHPTVWEPSVCTKAAFAKGVNWVRSRGFTVMGDPHMIPGADMFNHDPNKQSVQIGTDGEEHFVMKTVQPVKAGEEVFSSFGHISNAQLLNSYGFVLPGNSFDTVLIPTQLVVNTCYATF--VKLEADKLGEAETKKTWEQRLAMVASNRDADEGEQEAFVVSKYDLLPESLADMVQILTMSNDEEVAYATIAAVSQAKMGQYSPLLQDAKRNAGEG--------AIGADARTLARMLVNEEKKVLQDLRLQLMSVILDD 452          
BLAST of mRNA_H-elongata_contig11280.1046.1 vs. uniprot
Match: A0A836C8N7_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N7_9STRA)

HSP 1 Score: 296 bits (759), Expect = 1.150e-92
Identity = 163/343 (47.52%), Postives = 206/343 (60.06%), Query Frame = 2
Query:   35 LTRACFTVLRLLHERGLGKASPFHAYLGVLPFDHRLPMEWNESEVELLKGTSAESLVGVASLDRQFEAFQRVVMLHPTMWDSSVCSKTAFAKGVNWVRSRGFTAFGDPQMIPGADMFNHDPNKQAVQIGT---DGDDHFVMRTVHPVKAGQEVFSSFGNLSNAQLLNSYGFVLPGNPFDNVLIPTKLAVDTCHDTFLNIDIEGGKLGKEA-------AKSTWERRLQMVMSNAG-ESEDEAFVIAKYDLVPEKLVDTVQLLTMSNDEEVAYATIAAVAQAKMEQYSPLLDGGKISADSSEKAEKVDRSIGADARVVAEMLVSEEKSILVDLKLQLMGAIMQDG 1030
            LT ACFTVLRLLHE G G  + F  YL +LP DHR+P+EWN  E  LL+GT+AE LV   +L+ Q+  F+ +V  HP +W   VCS  AFAK VNWVRSRGFT  G+P MIP ADMFNH+P+ Q+   G    D  D FVMR V  +  G EVFSSFG ++NAQL+NSYGFVLP NPFD+VL+P KL +D C   F N++  G + G+          +  W++RL M+       SE+E FV+ KYD++PE L + +Q L  + D  V Y  + AV   K++ Y+P        AD          S+ ADAR V E LV EE   L DLK QLM   M  G
Sbjct:  118 LTSACFTVLRLLHELGEGGKAHFSNYLSILPRDHRIPLEWNAEERALLQGTAAEPLVLSGNLEGQYSVFEELVKEHPGLWAKEVCSSAAFAKAVNWVRSRGFTVHGEPYMIPCADMFNHNPSDQSAMFGQASEDSADVFVMRAVKSIPKGSEVFSSFGQIANAQLVNSYGFVLPQNPFDSVLVPAKLVIDACRAAFANLERSGEEGGEXXXXXXXXXVERAWQKRLDMLRGGGVLVSEEEQFVLTKYDMLPEPLAEAIQSLLFTEDPLVVYGALVAVIAEKLQSYAP---AAAFEAD----------SVRADARAVVEALVREETVFLTDLKAQLMRECMMMG 447          
BLAST of mRNA_H-elongata_contig11280.1046.1 vs. uniprot
Match: A0A8K1C4W9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4W9_PYTOL)

HSP 1 Score: 108 bits (271), Expect = 2.240e-22
Identity = 100/330 (30.30%), Postives = 154/330 (46.67%), Query Frame = 2
Query:   53 TVLRLLHERGLGKASPFHAYLGVLPFDHRLPMEWNESEVELLKGTSAESLVGVASLDRQFEAF-QRVVMLHPTMWDSSVCSKTAFAKGVNWVRSRGFTAFGD---PQMIPGADMFNHDPNKQAVQIGTDGDDHFVMRTVHPVKAGQEVFSSFGNLSNAQLLNSYGFVLPGN-PFDNVLIPTKLAVDTCHDTFLNIDIEGG------KLGKEAAKSTWE-----RRLQMVMSNAGESEDEAFVIAKYDLVPEK--LVDTVQLLTMSND--EEVAYATIAAVAQAKMEQYSPLLDGGKISADSSEKAEKVDRSIGADARVVAEMLVSEEKSI 982
            TVL LL+E+  G+AS FH YL  LP    +PM W      LLK T+A  +V    +   F+ +   +      +W +SV S T F    + + SR F A  D   P ++P  DM NHDP      I    + ++ +     + + + V  S+G LSNAQLL  YGFVLP   P D++LI T  AV T    + ++   G       +L K+A  +T       +R ++   +  +S+D   V A +    E   + DT+     +N+   E+ Y  ++ + Q K +QYS LL            AE V      +AR + + LV+ E+ +
Sbjct:   95 TVLALLNEKSKGEASAFHGYLQQLPSRVAVPMTWTAESRALLKDTAASPIVDFELVQSLFQRYLSPLAASFSELWPASVASLTEFIWAYSVISSRAF-AINDRQEPTLLPVIDMANHDPTDSNAIIQRTPEGNYTLSATRAIASDEAVTISYGELSNAQLLCRYGFVLPTTVPTDSILI-TSTAVRT---VYAHVSAGGSVESALQELEKQAHATTTTDSPPTKRRKLFEPSPADSDD-TLVFALHGNPAEAFGISDTLLSFVFANNLSAELLYDVLSVLLQHKDKQYSELL------------AELVKSDGSDEARGLVQALVTHERQV 406          
BLAST of mRNA_H-elongata_contig11280.1046.1 vs. uniprot
Match: A0A5J4YBZ4_9CHLO (SET domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YBZ4_9CHLO)

HSP 1 Score: 95.5 bits (236), Expect = 1.380e-17
Identity = 85/284 (29.93%), Postives = 133/284 (46.83%), Query Frame = 2
Query:   53 TVLRLLHERGLGKASPFHAYLGVLPFDHRLPMEWNESEVELLKGTSAESLVGVASLDRQFEAFQRVVMLHPT-MWDSSVCSKTAFAKGVNWVRSRGFTAF------GDPQ------MIPGADMFNHD--PNKQAVQIGTDGDDH--------------FVMRTVHPVKAGQEVFSSFGNLSNAQLLNSYGFVL---PG--NPFDNVLIPTKLAVDTCHDTFLNIDIEGGKLGKEAAKSTWERRLQMVMSNAGESEDEAFVIAKYDLVPEKLVDTVQLLTMSNDE 802
            TVL LL+E G G  S F A+L  LP +H   + W++ ++  L+GT+ E  +   S    FE     +M   T +W + V +  AF      V+SR F         G  Q      M+P  DM NH   P+K+   +     +H              F M+    +  G+++  ++G+LS+AQLL +YGFV    PG  NP + V +PT L + +C +            G EAA + +E + ++ +  A   +D AFV+   + +P+ LV  VQ+L M   E
Sbjct:   89 TVLLLLYEMGQGSKSKFSAFLQTLPQEHDCVLCWSKGQLSELQGTAIE--IAGDSTRTVFEREVLPIMQQATDIWSAEVQTYEAFELYAGLVQSRAFHMLQENWITGSAQEGVELYMLPAIDMINHSTQPDKRNTLLRKSNAEHTVKVDGEAMTIQGFFTMKAERDIAKGEQLLHTYGDLSDAQLLQTYGFVEDFEPGYDNPHNFVPVPTVLLLQSCSEA-----------GDEAALACFEGKRKL-LQQANILKD-AFVVTSQEPLPDDLVTAVQVLHMEPHE 357          
BLAST of mRNA_H-elongata_contig11280.1046.1 vs. uniprot
Match: A0A3F2RVL3_9STRA (SET domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RVL3_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 9.230e-17
Identity = 59/176 (33.52%), Postives = 89/176 (50.57%), Query Frame = 2
Query:   26 SLTLTRACFTVLRLLHERGLGKASPFHAYLGVLPFDHRLPMEWNESEVELLKGTSAESLVGVASLDRQFEAF-QRVVMLHPTMWDSSVCSKTAFAKGVNWVRSRGFTAFGD--PQMIPGADMFNHDPNKQAVQIGTDGDDHFVMRTVHPVKAGQEVFSSFGNLSNAQLLNSYGFVL 544
            ++ L+    T + LL E   G+ S F  Y+  LP D  LP+ WN    E+LK T+A  ++    + + + ++ + +    PT+W S V +   F    + V SR F   G+  P ++P  DM NH     A  I    D  F + T+  V+  + V  S+G+LSNAQLL  YGFVL
Sbjct:   82 AMQLSGTLRTTMALLAEYTRGEKSDFSGYIQQLPTDISLPLTWNAKHREMLKHTTAFPIIDDKLVLKMYSSYAEPLEKSFPTIWPSEVSTLERFMWAYSVVSSRAFKIVGEQEPTLLPVIDMANHAVENPAAHIVRADDGSFQLTTLRKVEKNEPVTISYGDLSNAQLLCRYGFVL 257          
BLAST of mRNA_H-elongata_contig11280.1046.1 vs. uniprot
Match: A0A5D6XTL9_9STRA (SET domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTL9_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.280e-16
Identity = 71/204 (34.80%), Postives = 96/204 (47.06%), Query Frame = 2
Query:   29 LTLTRACFTVLRLLHERGLGKASPFHAYLGVLPFDHRLPMEWNESEVELLKGTSAESLVGVASLDRQFEAFQRVVMLHPTMWDSSVCSKTAFAKGVNWVRSRGFTAFG--DPQMIPGADMFNHDPNKQAVQIGTDGDDHFVMRTVHPVKAGQEVFSSFGNLSNAQLLNSYGFVLPGN-PFDNVLIPTKLAVDTCHDTFLNIDIE 631
            L L+     VL LLHER   + S F  Y+  LP    LPM W+      LK T+A        L R+F          P +W +   + T F      V SR FT  G  +P ++P  DM NH     A  I    D  F + T+  V  G+ V  S+G+LSNA+LL  YGFVLP   P D +L+ +   + T +  FLN D++
Sbjct:  105 LQLSPTLQLVLALLHERARRQQSRFDGYIAQLPAHVSLPMNWSVHGRRQLKRTAALFERFAVPLARRF----------PALWPADETTLTDFQWAYAVVSSRAFTISGASEPALLPVIDMANHASENPAATIVRADDGSFQLVTLRAVAKGEAVTISYGDLSNAELLCRYGFVLPEPVPSDCMLVSSTELLAT-YTAFLNDDVD 297          
BLAST of mRNA_H-elongata_contig11280.1046.1 vs. uniprot
Match: A0A6A3KFJ7_9STRA (SET domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KFJ7_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.200e-16
Identity = 63/190 (33.16%), Postives = 92/190 (48.42%), Query Frame = 2
Query:   26 SLTLTRACFTVLRLLHERGLGKASPFHAYLGVLPFDHRLPMEWNESEVELLKGTSAESLVGVASLDRQFEAFQRVVMLH-PTMWDSSVCSKTAFAKGVNWVRSRGFTAFGD--PQMIPGADMFNHDPNKQAVQIGTDGDDHFVMRTVHPVKAGQEVFSSFGNLSNAQLLNSYGFVLPGN-PFDNVLIPTK 583
            SL  + A  T L LL E   G+ S F+ Y+  LP    LP  W     E+LK T+A  ++    + + +  +   +M    T+W + V +   F    + V SR F    D  P ++P  DM NH     A  I       F + T+  V+  + V  S+G+LSNAQLL  YGFVLP + P D++LI + 
Sbjct:   90 SLQPSDAVKTTLALLAELARGEKSEFYGYIQQLPTCISLPFSWETKSREMLKNTTAHPILDDKLVLKMYADYAAPLMKEFSTIWPTDVSTLEKFQWAYSMVSSRAFKVTDDQEPTLLPVIDMANHAAENPAAHIVKTETGSFQLMTLRKVEKDEPVTISYGDLSNAQLLCHYGFVLPTSVPSDSILITSS 279          
BLAST of mRNA_H-elongata_contig11280.1046.1 vs. uniprot
Match: V9FCG7_PHYPR (SET domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=V9FCG7_PHYPR)

HSP 1 Score: 90.5 bits (223), Expect = 3.910e-16
Identity = 59/177 (33.33%), Postives = 84/177 (47.46%), Query Frame = 2
Query:   26 SLTLTRACFTVLRLLHERGLGKASPFHAYLGVLPFDHRLPMEWNESEVELLKGTSAESLVGVASLDRQFEAFQRVVMLH-PTMWDSSVCSKTAFAKGVNWVRSRGFTAFG--DPQMIPGADMFNHDPNKQAVQIGTDGDDHFVMRTVHPVKAGQEVFSSFGNLSNAQLLNSYGFVLP 547
            +L L+    T L L  E   G  S FH Y+  LP    LP  W+E   E+LK T+A  ++    + + +E +   +    P +W + V +   F    + V SR F      +P ++P  DM NH     A  I       F +  +  V+ G+ V  S+GNLSNAQLL  YGFVLP
Sbjct:   81 TLQLSGTVTTTLALWAELARGDKSDFHGYIQQLPTTISLPFSWDEKHREMLKNTTAFPILDDKLVLKLYEDYAAPLTKEFPAIWPTEVSTLKKFQWAYSMVSSRAFKVADAPEPTLLPVIDMANHSAENPAAHIVKTDSGSFQLVALRKVENGEPVTISYGNLSNAQLLCRYGFVLP 257          
BLAST of mRNA_H-elongata_contig11280.1046.1 vs. uniprot
Match: K3WGB2_GLOUD (SET domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGB2_GLOUD)

HSP 1 Score: 90.1 bits (222), Expect = 6.470e-16
Identity = 64/208 (30.77%), Postives = 99/208 (47.60%), Query Frame = 2
Query:   23 RSLTLTRACFTVLRLLHERGLGKASPFHAYLGVLPFDHRLPMEWNESEVELLKGTSAESLVGVASLDRQFEAFQ-RVVMLHPTMWDSSVCSKTA-FAKGVNWVRSRGFTAFG--DPQMIPGADMFNHDPNKQAVQIGTDGDDHFVMRTVHPVKAGQEVFSSFGNLSNAQLLNSYGFVLPGN-PFDNVLIPTKLAVDTCHDTFLNIDIE 631
            + + L+     V+ LL+E GLG+ S F  Y+  LP    LPM W+      LK T+A   V    +   F +F   +    P++W  +V    A F      V SR FT     +P ++P  DM NH       +I       F +  +  ++ G+ V  S+G LSNA+ L  YGFVLP + P D +L+ +   + T +  F+N D++
Sbjct:   94 QEMQLSPTVLLVMALLYEHGLGEKSRFAGYIAQLPKQIPLPMTWDAKARRALKHTAAAPSVDQELVANMFTSFAVPLATKFPSIWPENVAKDPAHFQWAYTVVSSRAFTIADATEPTLLPVIDMANHAHTNPCAKIVKTDAGAFQLVALRQIEKGEAVTISYGELSNAEFLCRYGFVLPESVPTDCILVQSTELLQT-YTAFMNDDVD 300          
BLAST of mRNA_H-elongata_contig11280.1046.1 vs. uniprot
Match: A0A329RP34_9STRA (SET domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RP34_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.210e-15
Identity = 98/357 (27.45%), Postives = 149/357 (41.74%), Query Frame = 2
Query:   26 SLTLTRACFTVLRLLHERGLGKASPFHAYLGVLPFDHRLPMEWNESEVELLKGTSAESLVGVASLDRQFEAFQ-RVVMLHPTMWDSSVCSKTAFAKGVNWVRSRGFTAFG--DPQMIPGADMFNHDPNKQAVQIGTDGDDHFVMRTVHPVKAGQEVFSSFGNLSNAQLLNSYGFVLPGNPFDNVLIPTKLAVDTCHDTFL------NIDIEGG--KLGKEAAKSTWERRLQMVMSNAGESEDEAFVIAKYDLVPE-KLVDTVQLLTMSND--EEVAYATIAAVAQAKMEQYSPLLDGGKISADSSEKAEKVDRSIGADARVVAEMLVSEEKSILVDLKLQLMGAIMQDGHSSEEDVD 1054
            +L L+    T + LL E   G  S FH Y+  L     LP  W E   ELLK T+A  ++    + + +E +   +    PT+W + V +   F    + V SR F      +P M+P  DM NH     A  I       F +  +  V+  + V  S+G+LSNAQLL  YGFVLP     + +  T   +     +F       + D+E     +GK           +  ++     E+  F     D   E  L D +    M+++   E  Y  +AAV Q K ++YS LL      A+SSE       SI         +L   E+ +   + L LM   +++G  S +D D
Sbjct:   81 TLQLSGTVKTTVALLAELARGDKSDFHGYIQQLQTTISLPFSWAEKHRELLKYTTAFPILDDKLVLKLYEDYAVPLAKEFPTIWSTEVSTLKKFQWAYSMVSSRAFKVANAQEPTMLPVIDMANHSAENPAAYIVKTDSGSFQLIALRKVEKDEPVTISYGDLSNAQLLCRYGFVLPTLVSSDSIHITSSELTNAFKSFSQNSEDEDEDVEDNIPHVGKXXXXXXANPAKRRKLAQPKNDENALFFSLHGDAEQEFGLGDALLSFVMASNLPTEQLYDVLAAVLQEKDKRYSDLL------AESSEDTSAEVNSI--------HLLCQHERQVCRRILLGLMS--LEEGSDSSDDED 421          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11280.1046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPV0_ECTSI8.290e-15768.60SET domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836C8N7_9STRA1.150e-9247.52SET domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A8K1C4W9_PYTOL2.240e-2230.30Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5J4YBZ4_9CHLO1.380e-1729.93SET domain-containing protein n=1 Tax=Trebouxia sp... [more]
A0A3F2RVL3_9STRA9.230e-1733.52SET domain-containing protein n=3 Tax=Phytophthora... [more]
A0A5D6XTL9_9STRA1.280e-1634.80SET domain-containing protein n=1 Tax=Pythium bras... [more]
A0A6A3KFJ7_9STRA3.200e-1633.16SET domain-containing protein n=4 Tax=Phytophthora... [more]
V9FCG7_PHYPR3.910e-1633.33SET domain-containing protein n=9 Tax=Phytophthora... [more]
K3WGB2_GLOUD6.470e-1630.77SET domain-containing protein n=1 Tax=Globisporang... [more]
A0A329RP34_9STRA4.210e-1527.45SET domain-containing protein n=2 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11280contigH-elongata_contig11280:3766..7340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score398.7
Seed ortholog evalue2.7e-108
Seed eggNOG ortholog2880.D7FPV0
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K19199
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
EggNOG free text desc.peptidyl-lysine monomethylation
EggNOG OGsKOG1337@1,KOG1337@2759
EC2.1.1.43
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSET domain protein
Ec32 orthologEc-18_001770.1
Exons7
Model size1262
Cds size993
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929649.4997885-UTR-H-elongata_contig11280:3765..38891622929649.4997885-UTR-H-elongata_contig11280:3765..3889Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11280 3766..3889 -
1691679105.0896132-UTR-H-elongata_contig11280:3765..38891691679105.0896132-UTR-H-elongata_contig11280:3765..3889Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11280 3766..3889 -
1622929649.643754-UTR-H-elongata_contig11280:7195..73401622929649.643754-UTR-H-elongata_contig11280:7195..7340Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11280 7196..7340 -
1691679105.201327-UTR-H-elongata_contig11280:7195..73401691679105.201327-UTR-H-elongata_contig11280:7195..7340Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11280 7196..7340 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929649.5205283-CDS-H-elongata_contig11280:3889..40121622929649.5205283-CDS-H-elongata_contig11280:3889..4012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11280 3890..4012 -
1691679105.1090157-CDS-H-elongata_contig11280:3889..40121691679105.1090157-CDS-H-elongata_contig11280:3889..4012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11280 3890..4012 -
1622929649.5358737-CDS-H-elongata_contig11280:4329..45661622929649.5358737-CDS-H-elongata_contig11280:4329..4566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11280 4330..4566 -
1691679105.119464-CDS-H-elongata_contig11280:4329..45661691679105.119464-CDS-H-elongata_contig11280:4329..4566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11280 4330..4566 -
1622929649.5527-CDS-H-elongata_contig11280:4770..49991622929649.5527-CDS-H-elongata_contig11280:4770..4999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11280 4771..4999 -
1691679105.1334362-CDS-H-elongata_contig11280:4770..49991691679105.1334362-CDS-H-elongata_contig11280:4770..4999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11280 4771..4999 -
1622929649.5748615-CDS-H-elongata_contig11280:5614..57091622929649.5748615-CDS-H-elongata_contig11280:5614..5709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11280 5615..5709 -
1691679105.149305-CDS-H-elongata_contig11280:5614..57091691679105.149305-CDS-H-elongata_contig11280:5614..5709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11280 5615..5709 -
1622929649.6015217-CDS-H-elongata_contig11280:5984..61161622929649.6015217-CDS-H-elongata_contig11280:5984..6116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11280 5985..6116 -
1691679105.1631782-CDS-H-elongata_contig11280:5984..61161691679105.1631782-CDS-H-elongata_contig11280:5984..6116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11280 5985..6116 -
1622929649.6170287-CDS-H-elongata_contig11280:6594..67351622929649.6170287-CDS-H-elongata_contig11280:6594..6735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11280 6595..6735 -
1691679105.178525-CDS-H-elongata_contig11280:6594..67351691679105.178525-CDS-H-elongata_contig11280:6594..6735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11280 6595..6735 -
1622929649.632774-CDS-H-elongata_contig11280:7159..71951622929649.632774-CDS-H-elongata_contig11280:7159..7195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11280 7160..7195 -
1691679105.1904702-CDS-H-elongata_contig11280:7159..71951691679105.1904702-CDS-H-elongata_contig11280:7159..7195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11280 7160..7195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11280.1046.1prot_H-elongata_contig11280.1046.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11280 3890..7195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11280.1046.1

>prot_H-elongata_contig11280.1046.1 ID=prot_H-elongata_contig11280.1046.1|Name=mRNA_H-elongata_contig11280.1046.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=331bp
MEWNESEVELLKGTSAESLVGVASLDRQFEAFQRVVMLHPTMWDSSVCSK
TAFAKGVNWVRSRGFTAFGDPQMIPGADMFNHDPNKQAVQIGTDGDDHFV
MRTVHPVKAGQEVFSSFGNLSNAQLLNSYGFVLPGNPFDNVLIPTKLAVD
TCHDTFLNIDIEGGKLGKEAAKSTWERRLQMVMSNAGESEDEAFVIAKYD
LVPEKLVDTVQLLTMSNDEEVAYATIAAVAQAKMEQYSPLLDGGKISADS
SEKAEKVDRSIGADARVVAEMLVSEEKSILVDLKLQLMGAIMQDGHSSEE
DVDLDSEPHEQQVILPRKTGDSRNKRRKKQ*
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mRNA from alignment at H-elongata_contig11280:3766..7340-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11280.1046.1 ID=mRNA_H-elongata_contig11280.1046.1|Name=mRNA_H-elongata_contig11280.1046.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3575bp|location=Sequence derived from alignment at H-elongata_contig11280:3766..7340- (Himanthalia elongata Himel1 dioecious)
GGATGGCCAAAAGTCAGCGGGCCGATCGTTAACGCTAACACGAGCGTGCT TTACCGTGCTGCGCTTATTGCACGAGCGAGGACTCGGGAAGGCGTCCCCT TTCCACGCCTACTTGGGCGTCCTCCCGTTCGACCACCGCTTGCCGATGGA GTGGAATGAGTCTGAGGTTGAGCTCCTGAAGGTACGGTATAGAGAAGGAG TAGAGTGTGTGGGAAGTTTTTACATAGGAGCAGCGTCTACTTGGCATGGT CGTTCATCCGGCAGGCATCATCGGTACTGTAAACGTGCTACTTACAATGT AACGATGAGTCGGAACGCTTGGTCACCCTTTCCGCGGTGACCCTCTAGCC GTGTCTTGGTTGTCTCTGAAATACACTTCGCATTGGTCGTCGTGGTCGGC TCTAGTGGTAGATCCGTTTTTCCATAGCAACGCGTAAGAGTAGGTAGACA AGGTTGGCGTGAGGCCCAGCAGTAGTCGAAGCAGTAGTCGAAGTAGAGGC TTTAGGGCCAGTTTGTCTTGACGATCGTTCGCTGTGGCGCTGATCAAGCC CCCGACGAAGTCACTTCAACGCAGCAGCGCCGGAACCTTCCGCGGTCGCC CTCAGGGGACTTCGGCGGAATCGCTCGTCGGCGTAGCTAGCCTAGACAGG CAGTTCGAAGCTTTTCAAAGGGTGGTGATGTTGCACCCGACCATGTGGGA CTCCAGCGTGTGCTCCAAAACTGCGTTTGCCAAAGGAGTGAATTGGGTGA GGAGAGGAACATGGCTTGTTTGGCCGGATTCTCTATCTTCACGTGCGTAT GATCGTACACCTGCTGCCACAGGCTGCCTTCGGGCGTTTGTCAGGGAAAC TCTTGGCAGCGCCACTTTGTTTAATGTCCATGTCGTTCGTACATTTTAGG TCCTGTATGCCCCCGATTCATTCAACCACACCTTTGGATTTGGTAACCAA TTCAATAGACTGATAAGAGACAAAATGTCACAACAATTAACAAGTGTTTT GTACTCTTCCTGGGATGCTTTCTGCTGGGGGGTGAAGGGTGAATTACTCT TTTAGCTCGGCCGTGACGCACCCGCTCCCGTGGTGCCTCCCCCTTCTCTC CCTGCCGATGCCGATGGTGCACTATTGTAATACTGCACTACTGCACTATA GTGTATTTCGGAGTATTTCATTATTGATGATGCCCAATAGAGCTAGCTCA TCCTGTTGCGCTCTTGGGTAAAAGGTGCGCTCGCGAGGGTTTACGGCGTT CGGCGATCCGCAGATGATCCCGGGGGCAGACATGTTCAACCATGATCCCA ACAAGCAGGCGGTGCAGATCGGAACAGACGGTGACGACCACTTCGTGATG AGGACGGTAAGTAGCTTGCCCCCTCTCGCTCGTCGTGTCTAAGACCAGGG CCACATCCATTATCTTTCCGAGCACCTGCTTGGAGTCAAGCAACGTTATT GCGCAGGACGTGATCTAGCAGTCATTCCGGGTTTTGAGGTCGGGTAGTGT GCCCGGAGACGACACCCCTAAAAAATGCTTCATAATAGGACTGACGTGTA TCGCCGCCGTTTCAAGTGCGATCAATTCTCTAGGCAAGAAGAGACAAAAC AAAACCGTCGGGTTCGTGCGGTGCGGTACAGGTGCACCCTGTCAAAGCGG GACAGGAGGTATTCAGCAGCTTTGGCAATCTCTCGAACGCCCAGCTGCTC AACTCGTACGGCTTTGTTCTGCCAGGGTAAGGGAATGAATGGACAAGGAC GACAAGGACAAGCACGAGGCCTTTTTATTGGCTTCCCTCTCCCACCATTC CCCGTGACTCGACCCTTGATACCCTTGAGACACACTACCGTCACCTTTTG ACCATGGGACGCTACCGAACGAGGGCAATGATACAGACGATTCGCGTCCG TTGGTTTTACTCTAGCTCAAGCCATGTCGCTTTCCTGACTGTGGGGGGGG GGGGGGGGGGGAAAAGGGGTAAAACAAAGGGGGTTGGACGGGGAAAAAAA TTTGTCCTTTAAATTCAGCTGTNNNNNNNNNNCAAGCAAGGAAAAAATTA ACACACTCGTCTCTTCTTTTTTTTTTTTACTTACACAGCACCATTTCTTT TTTGTGGGGGGGGGGGGGGGGGGGGGAGGGCAAGAGCGTTAAGACAACGG TGTTCGACGGCGAAATAATATTGTCCCTTAAATTCAGCTGTCGTCCAACT GTCTGTCCCCTGAAAAAGTGACAGTCCCTCTGGATGATTAAAATGGTGTA GTCGAACCACGCGGACCTTAAAACGTAGTAGCATTGCGCCGCCCCCACCC TCCTTTTGGGAAACATTTTCTGGCTACGGCCTCCTCCCCAGAAACCCGTT CGACAACGTGCTCATCCCAACCAAGCTGGCCGTGGACACCTGTCACGACA CCTTCTTGAATATCGATATCGAGGGTGGAAAACTCGGCAAGGAAGCCGCG AAGTCGACTTGGGAGCGACGACTCCAGATGGTGATGAGCAACGCAGGAGA AAGCGAGGATGAAGCTTTCGTCATCGCAAAGTATGATCTGGTGCCGGAGA AGCTGGTGGACACGGTTCAGGTCGGCCAAACTGTCCAATAAAAATCAGGA GCAGAGAACGCGGGATGGGAATACTCTTGGAAATAATGTAGCGGTCGTTC CGGGGGGAACAATGATGCGAGAAAAATATAAAATGTGAACGCTCTATTGC TCGGCCAAAATCAATCGTCCCCTATCCCCGTCCTCGCTTCCGGTGGGTGC CACCGGCCATGCTGACGTTCGTAGCTGCTGACCATGTCCAACGACGAGGA AGTAGCGTACGCGACGATCGCTGCAGTCGCGCAGGCCAAGATGGAGCAGT ATAGCCCTCTTCTGGACGGAGGAAAAATTAGCGCCGATAGCAGCGAGAAA GCGGAGAAAGTCGATCGGTCCATCGGGGCTGACGCTCGGGTTGTCGCGGA GATGCTCGTATCGGAAGAGAAATCAATTCTTGTTGACTTAAAGCTTCAGC TCATGGGCGCGGTGAGTCGGAGTCGACGTAGGGAAATACATTTTTATCTA GAGCGGGTGCTCTATGTCGATCGTGTGGCGTTTTTTTCGGCTAGAGCCGC GCCGTGAACCTAAAACAACGACCACCCCCCCCAGACATGCCCACCCCTGT TGCTTACGCGAGACTGTCAGGCCGGTACAATAGTAGCTGGTCTGGCCTGT GGGTTAGTCTGTTTACAGGCCATAGCTTTCAATTTCTACTGGAAATGTCT CACTGATCAGCCGAAGAATAATCGCGACCACAGTTCTCCCTTTTCTCGCT TCGCTGGGCGCTTTTTGCTGGGTTACAGATTATGCAGGATGGTCATTCCT CGGAGGAAGATGTAGACTTAGATAGCGAGCCTCATGAGCAACAGGTGATA CTGCCGAGGAAAACAGGGGACAGCAGAAACAAGAGGCGCAAGAAACAGTG ACCTACTCAACAATCGCGTCGTCCCCTTGGCGTGGCTTCCTCGGTAACTT AAAACAGGCCCTGTCGAGGTTATTGTGTCGAAATGAAAACACTTCGCGAT CAAAATATGAGAGACATTTGGTGTG
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Coding sequence (CDS) from alignment at H-elongata_contig11280:3766..7340-

>mRNA_H-elongata_contig11280.1046.1 ID=mRNA_H-elongata_contig11280.1046.1|Name=mRNA_H-elongata_contig11280.1046.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1986bp|location=Sequence derived from alignment at H-elongata_contig11280:3766..7340- (Himanthalia elongata Himel1 dioecious)
ATGGAGTGGAATGAGTCTGAGGTTGAGCTCCTGAAGATGGAGTGGAATGA
GTCTGAGGTTGAGCTCCTGAAGGGGACTTCGGCGGAATCGCTCGTCGGCG
TAGCTAGCCTAGACAGGCAGTTCGAAGCTTTTCAAAGGGTGGTGATGTTG
CACCCGACCATGTGGGACTCCAGCGTGTGCTCCAAAACTGCGTTTGCCAA
AGGAGTGAATTGGGGGACTTCGGCGGAATCGCTCGTCGGCGTAGCTAGCC
TAGACAGGCAGTTCGAAGCTTTTCAAAGGGTGGTGATGTTGCACCCGACC
ATGTGGGACTCCAGCGTGTGCTCCAAAACTGCGTTTGCCAAAGGAGTGAA
TTGGGTGCGCTCGCGAGGGTTTACGGCGTTCGGCGATCCGCAGATGATCC
CGGGGGCAGACATGTTCAACCATGATCCCAACAAGCAGGCGGTGCAGATC
GGAACAGACGGTGACGACCACTTCGTGATGAGGACGGTGCGCTCGCGAGG
GTTTACGGCGTTCGGCGATCCGCAGATGATCCCGGGGGCAGACATGTTCA
ACCATGATCCCAACAAGCAGGCGGTGCAGATCGGAACAGACGGTGACGAC
CACTTCGTGATGAGGACGGTGCACCCTGTCAAAGCGGGACAGGAGGTATT
CAGCAGCTTTGGCAATCTCTCGAACGCCCAGCTGCTCAACTCGTACGGCT
TTGTTCTGCCAGGGTGCACCCTGTCAAAGCGGGACAGGAGGTATTCAGCA
GCTTTGGCAATCTCTCGAACGCCCAGCTGCTCAACTCGTACGGCTTTGTT
CTGCCAGGAAACCCGTTCGACAACGTGCTCATCCCAACCAAGCTGGCCGT
GGACACCTGTCACGACACCTTCTTGAATATCGATATCGAGGGTGGAAAAC
TCGGCAAGGAAGCCGCGAAGTCGACTTGGGAGCGACGACTCCAGATGGTG
ATGAGCAACGCAGGAGAAAGCGAGGATGAAGCTTTCGTCATCGCAAAGTA
TGATCTGGTGCCGGAGAAGCTGGTGGACACGGTTCAGAAACCCGTTCGAC
AACGTGCTCATCCCAACCAAGCTGGCCGTGGACACCTGTCACGACACCTT
CTTGAATATCGATATCGAGGGTGGAAAACTCGGCAAGGAAGCCGCGAAGT
CGACTTGGGAGCGACGACTCCAGATGGTGATGAGCAACGCAGGAGAAAGC
GAGGATGAAGCTTTCGTCATCGCAAAGTATGATCTGGTGCCGGAGAAGCT
GGTGGACACGGTTCAGCTGCTGACCATGTCCAACGACGAGGAAGTAGCGT
ACGCGACGATCGCTGCAGTCGCGCAGGCCAAGATGGAGCAGTATAGCCCT
CTTCTGGACGGAGGAAAAATTAGCGCCGATAGCAGCGAGAAAGCGGAGAA
AGTCGATCGGTCCATCGGGGCTGACGCTCGGGTTGTCGCGGAGATGCTCG
TATCGGAAGAGAAATCAATTCTTGTTGACTTAAAGCTTCAGCTCATGGGC
GCGCTGCTGACCATGTCCAACGACGAGGAAGTAGCGTACGCGACGATCGC
TGCAGTCGCGCAGGCCAAGATGGAGCAGTATAGCCCTCTTCTGGACGGAG
GAAAAATTAGCGCCGATAGCAGCGAGAAAGCGGAGAAAGTCGATCGGTCC
ATCGGGGCTGACGCTCGGGTTGTCGCGGAGATGCTCGTATCGGAAGAGAA
ATCAATTCTTGTTGACTTAAAGCTTCAGCTCATGGGCGCGATTATGCAGG
ATGGTCATTCCTCGGAGGAAGATGTAGACTTAGATAGCGAGCCTCATGAG
CAACAGGTGATACTGCCGAGGAAAACAGGGGACAGCAGAAACAAGAGGCG
CAAGAAACAGTGAATTATGCAGGATGGTCATTCCTCGGAGGAAGATGTAG
ACTTAGATAGCGAGCCTCATGAGCAACAGGTGATACTGCCGAGGAAAACA
GGGGACAGCAGAAACAAGAGGCGCAAGAAACAGTGA
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