mRNA_H-elongata_contig11280.1046.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11280.1046.1 vs. uniprot
Match: D7FPV0_ECTSI (SET domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPV0_ECTSI) HSP 1 Score: 461 bits (1185), Expect = 8.290e-157 Identity = 236/344 (68.60%), Postives = 273/344 (79.36%), Query Frame = 2
Query: 2 DGQKSAGRSLTLTRACFTVLRLLHERGLGKASPFHAYLGVLPFDHRLPMEWNESEVELLKGTSAESLVGVASLDRQFEAFQRVVMLHPTMWDSSVCSKTAFAKGVNWVRSRGFTAFGDPQMIPGADMFNHDPNKQAVQIGTDGDDHFVMRTVHPVKAGQEVFSSFGNLSNAQLLNSYGFVLPGNPFDNVLIPTKLAVDTCHDTFLNIDIEGGKLGKEAAKSTWERRLQMVMSN--AGESEDEAFVIAKYDLVPEKLVDTVQLLTMSNDEEVAYATIAAVAQAKMEQYSPLLDGGKISADSSEKAEKVDRSIGADARVVAEMLVSEEKSILVDLKLQLMGAIMQD 1027
G+ S + LTRAC TVLRLLHERGLG++SPFH+YL VLP DHRLP+EW E+EV LL+GTSAE LVG SLD QFEAFQ VV HPT+W+ SVC+K AFAKGVNWVRSRGFT GDP MIPGADMFNHDPNKQ+VQIGTDG++HFVM+TV PVKAG+EVFSSFG++SNAQLLNSYGFVLPGN FD VLIPT+L V+TC+ TF + +E KLG+ K TWE+RL MV SN A E E EAFV++KYDL+PE L D VQ+LTMSNDEEVAYATIAAV+QAKM QYSPLL K +A +IGADAR +A MLV+EEK +L DL+LQLM I+ D
Sbjct: 119 QGESSKPPAPRLTRACLTVLRLLHERGLGESSPFHSYLSVLPQDHRLPLEWTEAEVGLLQGTSAEPLVGAGSLDSQFEAFQSVVAQHPTVWEPSVCTKAAFAKGVNWVRSRGFTVMGDPHMIPGADMFNHDPNKQSVQIGTDGEEHFVMKTVQPVKAGEEVFSSFGHISNAQLLNSYGFVLPGNSFDTVLIPTQLVVNTCYATF--VKLEADKLGEAETKKTWEQRLAMVASNRDADEGEQEAFVVSKYDLLPESLADMVQILTMSNDEEVAYATIAAVSQAKMGQYSPLLQDAKRNAGEG--------AIGADARTLARMLVNEEKKVLQDLRLQLMSVILDD 452
BLAST of mRNA_H-elongata_contig11280.1046.1 vs. uniprot
Match: A0A836C8N7_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N7_9STRA) HSP 1 Score: 296 bits (759), Expect = 1.150e-92 Identity = 163/343 (47.52%), Postives = 206/343 (60.06%), Query Frame = 2
Query: 35 LTRACFTVLRLLHERGLGKASPFHAYLGVLPFDHRLPMEWNESEVELLKGTSAESLVGVASLDRQFEAFQRVVMLHPTMWDSSVCSKTAFAKGVNWVRSRGFTAFGDPQMIPGADMFNHDPNKQAVQIGT---DGDDHFVMRTVHPVKAGQEVFSSFGNLSNAQLLNSYGFVLPGNPFDNVLIPTKLAVDTCHDTFLNIDIEGGKLGKEA-------AKSTWERRLQMVMSNAG-ESEDEAFVIAKYDLVPEKLVDTVQLLTMSNDEEVAYATIAAVAQAKMEQYSPLLDGGKISADSSEKAEKVDRSIGADARVVAEMLVSEEKSILVDLKLQLMGAIMQDG 1030
LT ACFTVLRLLHE G G + F YL +LP DHR+P+EWN E LL+GT+AE LV +L+ Q+ F+ +V HP +W VCS AFAK VNWVRSRGFT G+P MIP ADMFNH+P+ Q+ G D D FVMR V + G EVFSSFG ++NAQL+NSYGFVLP NPFD+VL+P KL +D C F N++ G + G+ + W++RL M+ SE+E FV+ KYD++PE L + +Q L + D V Y + AV K++ Y+P AD S+ ADAR V E LV EE L DLK QLM M G
Sbjct: 118 LTSACFTVLRLLHELGEGGKAHFSNYLSILPRDHRIPLEWNAEERALLQGTAAEPLVLSGNLEGQYSVFEELVKEHPGLWAKEVCSSAAFAKAVNWVRSRGFTVHGEPYMIPCADMFNHNPSDQSAMFGQASEDSADVFVMRAVKSIPKGSEVFSSFGQIANAQLVNSYGFVLPQNPFDSVLVPAKLVIDACRAAFANLERSGEEGGEXXXXXXXXXVERAWQKRLDMLRGGGVLVSEEEQFVLTKYDMLPEPLAEAIQSLLFTEDPLVVYGALVAVIAEKLQSYAP---AAAFEAD----------SVRADARAVVEALVREETVFLTDLKAQLMRECMMMG 447
BLAST of mRNA_H-elongata_contig11280.1046.1 vs. uniprot
Match: A0A8K1C4W9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4W9_PYTOL) HSP 1 Score: 108 bits (271), Expect = 2.240e-22 Identity = 100/330 (30.30%), Postives = 154/330 (46.67%), Query Frame = 2
Query: 53 TVLRLLHERGLGKASPFHAYLGVLPFDHRLPMEWNESEVELLKGTSAESLVGVASLDRQFEAF-QRVVMLHPTMWDSSVCSKTAFAKGVNWVRSRGFTAFGD---PQMIPGADMFNHDPNKQAVQIGTDGDDHFVMRTVHPVKAGQEVFSSFGNLSNAQLLNSYGFVLPGN-PFDNVLIPTKLAVDTCHDTFLNIDIEGG------KLGKEAAKSTWE-----RRLQMVMSNAGESEDEAFVIAKYDLVPEK--LVDTVQLLTMSND--EEVAYATIAAVAQAKMEQYSPLLDGGKISADSSEKAEKVDRSIGADARVVAEMLVSEEKSI 982
TVL LL+E+ G+AS FH YL LP +PM W LLK T+A +V + F+ + + +W +SV S T F + + SR F A D P ++P DM NHDP I + ++ + + + + V S+G LSNAQLL YGFVLP P D++LI T AV T + ++ G +L K+A +T +R ++ + +S+D V A + E + DT+ +N+ E+ Y ++ + Q K +QYS LL AE V +AR + + LV+ E+ +
Sbjct: 95 TVLALLNEKSKGEASAFHGYLQQLPSRVAVPMTWTAESRALLKDTAASPIVDFELVQSLFQRYLSPLAASFSELWPASVASLTEFIWAYSVISSRAF-AINDRQEPTLLPVIDMANHDPTDSNAIIQRTPEGNYTLSATRAIASDEAVTISYGELSNAQLLCRYGFVLPTTVPTDSILI-TSTAVRT---VYAHVSAGGSVESALQELEKQAHATTTTDSPPTKRRKLFEPSPADSDD-TLVFALHGNPAEAFGISDTLLSFVFANNLSAELLYDVLSVLLQHKDKQYSELL------------AELVKSDGSDEARGLVQALVTHERQV 406
BLAST of mRNA_H-elongata_contig11280.1046.1 vs. uniprot
Match: A0A5J4YBZ4_9CHLO (SET domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YBZ4_9CHLO) HSP 1 Score: 95.5 bits (236), Expect = 1.380e-17 Identity = 85/284 (29.93%), Postives = 133/284 (46.83%), Query Frame = 2
Query: 53 TVLRLLHERGLGKASPFHAYLGVLPFDHRLPMEWNESEVELLKGTSAESLVGVASLDRQFEAFQRVVMLHPT-MWDSSVCSKTAFAKGVNWVRSRGFTAF------GDPQ------MIPGADMFNHD--PNKQAVQIGTDGDDH--------------FVMRTVHPVKAGQEVFSSFGNLSNAQLLNSYGFVL---PG--NPFDNVLIPTKLAVDTCHDTFLNIDIEGGKLGKEAAKSTWERRLQMVMSNAGESEDEAFVIAKYDLVPEKLVDTVQLLTMSNDE 802
TVL LL+E G G S F A+L LP +H + W++ ++ L+GT+ E + S FE +M T +W + V + AF V+SR F G Q M+P DM NH P+K+ + +H F M+ + G+++ ++G+LS+AQLL +YGFV PG NP + V +PT L + +C + G EAA + +E + ++ + A +D AFV+ + +P+ LV VQ+L M E
Sbjct: 89 TVLLLLYEMGQGSKSKFSAFLQTLPQEHDCVLCWSKGQLSELQGTAIE--IAGDSTRTVFEREVLPIMQQATDIWSAEVQTYEAFELYAGLVQSRAFHMLQENWITGSAQEGVELYMLPAIDMINHSTQPDKRNTLLRKSNAEHTVKVDGEAMTIQGFFTMKAERDIAKGEQLLHTYGDLSDAQLLQTYGFVEDFEPGYDNPHNFVPVPTVLLLQSCSEA-----------GDEAALACFEGKRKL-LQQANILKD-AFVVTSQEPLPDDLVTAVQVLHMEPHE 357
BLAST of mRNA_H-elongata_contig11280.1046.1 vs. uniprot
Match: A0A3F2RVL3_9STRA (SET domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RVL3_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 9.230e-17 Identity = 59/176 (33.52%), Postives = 89/176 (50.57%), Query Frame = 2
Query: 26 SLTLTRACFTVLRLLHERGLGKASPFHAYLGVLPFDHRLPMEWNESEVELLKGTSAESLVGVASLDRQFEAF-QRVVMLHPTMWDSSVCSKTAFAKGVNWVRSRGFTAFGD--PQMIPGADMFNHDPNKQAVQIGTDGDDHFVMRTVHPVKAGQEVFSSFGNLSNAQLLNSYGFVL 544
++ L+ T + LL E G+ S F Y+ LP D LP+ WN E+LK T+A ++ + + + ++ + + PT+W S V + F + V SR F G+ P ++P DM NH A I D F + T+ V+ + V S+G+LSNAQLL YGFVL
Sbjct: 82 AMQLSGTLRTTMALLAEYTRGEKSDFSGYIQQLPTDISLPLTWNAKHREMLKHTTAFPIIDDKLVLKMYSSYAEPLEKSFPTIWPSEVSTLERFMWAYSVVSSRAFKIVGEQEPTLLPVIDMANHAVENPAAHIVRADDGSFQLTTLRKVEKNEPVTISYGDLSNAQLLCRYGFVL 257
BLAST of mRNA_H-elongata_contig11280.1046.1 vs. uniprot
Match: A0A5D6XTL9_9STRA (SET domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTL9_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.280e-16 Identity = 71/204 (34.80%), Postives = 96/204 (47.06%), Query Frame = 2
Query: 29 LTLTRACFTVLRLLHERGLGKASPFHAYLGVLPFDHRLPMEWNESEVELLKGTSAESLVGVASLDRQFEAFQRVVMLHPTMWDSSVCSKTAFAKGVNWVRSRGFTAFG--DPQMIPGADMFNHDPNKQAVQIGTDGDDHFVMRTVHPVKAGQEVFSSFGNLSNAQLLNSYGFVLPGN-PFDNVLIPTKLAVDTCHDTFLNIDIE 631
L L+ VL LLHER + S F Y+ LP LPM W+ LK T+A L R+F P +W + + T F V SR FT G +P ++P DM NH A I D F + T+ V G+ V S+G+LSNA+LL YGFVLP P D +L+ + + T + FLN D++
Sbjct: 105 LQLSPTLQLVLALLHERARRQQSRFDGYIAQLPAHVSLPMNWSVHGRRQLKRTAALFERFAVPLARRF----------PALWPADETTLTDFQWAYAVVSSRAFTISGASEPALLPVIDMANHASENPAATIVRADDGSFQLVTLRAVAKGEAVTISYGDLSNAELLCRYGFVLPEPVPSDCMLVSSTELLAT-YTAFLNDDVD 297
BLAST of mRNA_H-elongata_contig11280.1046.1 vs. uniprot
Match: A0A6A3KFJ7_9STRA (SET domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KFJ7_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 3.200e-16 Identity = 63/190 (33.16%), Postives = 92/190 (48.42%), Query Frame = 2
Query: 26 SLTLTRACFTVLRLLHERGLGKASPFHAYLGVLPFDHRLPMEWNESEVELLKGTSAESLVGVASLDRQFEAFQRVVMLH-PTMWDSSVCSKTAFAKGVNWVRSRGFTAFGD--PQMIPGADMFNHDPNKQAVQIGTDGDDHFVMRTVHPVKAGQEVFSSFGNLSNAQLLNSYGFVLPGN-PFDNVLIPTK 583
SL + A T L LL E G+ S F+ Y+ LP LP W E+LK T+A ++ + + + + +M T+W + V + F + V SR F D P ++P DM NH A I F + T+ V+ + V S+G+LSNAQLL YGFVLP + P D++LI +
Sbjct: 90 SLQPSDAVKTTLALLAELARGEKSEFYGYIQQLPTCISLPFSWETKSREMLKNTTAHPILDDKLVLKMYADYAAPLMKEFSTIWPTDVSTLEKFQWAYSMVSSRAFKVTDDQEPTLLPVIDMANHAAENPAAHIVKTETGSFQLMTLRKVEKDEPVTISYGDLSNAQLLCHYGFVLPTSVPSDSILITSS 279
BLAST of mRNA_H-elongata_contig11280.1046.1 vs. uniprot
Match: V9FCG7_PHYPR (SET domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=V9FCG7_PHYPR) HSP 1 Score: 90.5 bits (223), Expect = 3.910e-16 Identity = 59/177 (33.33%), Postives = 84/177 (47.46%), Query Frame = 2
Query: 26 SLTLTRACFTVLRLLHERGLGKASPFHAYLGVLPFDHRLPMEWNESEVELLKGTSAESLVGVASLDRQFEAFQRVVMLH-PTMWDSSVCSKTAFAKGVNWVRSRGFTAFG--DPQMIPGADMFNHDPNKQAVQIGTDGDDHFVMRTVHPVKAGQEVFSSFGNLSNAQLLNSYGFVLP 547
+L L+ T L L E G S FH Y+ LP LP W+E E+LK T+A ++ + + +E + + P +W + V + F + V SR F +P ++P DM NH A I F + + V+ G+ V S+GNLSNAQLL YGFVLP
Sbjct: 81 TLQLSGTVTTTLALWAELARGDKSDFHGYIQQLPTTISLPFSWDEKHREMLKNTTAFPILDDKLVLKLYEDYAAPLTKEFPAIWPTEVSTLKKFQWAYSMVSSRAFKVADAPEPTLLPVIDMANHSAENPAAHIVKTDSGSFQLVALRKVENGEPVTISYGNLSNAQLLCRYGFVLP 257
BLAST of mRNA_H-elongata_contig11280.1046.1 vs. uniprot
Match: K3WGB2_GLOUD (SET domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGB2_GLOUD) HSP 1 Score: 90.1 bits (222), Expect = 6.470e-16 Identity = 64/208 (30.77%), Postives = 99/208 (47.60%), Query Frame = 2
Query: 23 RSLTLTRACFTVLRLLHERGLGKASPFHAYLGVLPFDHRLPMEWNESEVELLKGTSAESLVGVASLDRQFEAFQ-RVVMLHPTMWDSSVCSKTA-FAKGVNWVRSRGFTAFG--DPQMIPGADMFNHDPNKQAVQIGTDGDDHFVMRTVHPVKAGQEVFSSFGNLSNAQLLNSYGFVLPGN-PFDNVLIPTKLAVDTCHDTFLNIDIE 631
+ + L+ V+ LL+E GLG+ S F Y+ LP LPM W+ LK T+A V + F +F + P++W +V A F V SR FT +P ++P DM NH +I F + + ++ G+ V S+G LSNA+ L YGFVLP + P D +L+ + + T + F+N D++
Sbjct: 94 QEMQLSPTVLLVMALLYEHGLGEKSRFAGYIAQLPKQIPLPMTWDAKARRALKHTAAAPSVDQELVANMFTSFAVPLATKFPSIWPENVAKDPAHFQWAYTVVSSRAFTIADATEPTLLPVIDMANHAHTNPCAKIVKTDAGAFQLVALRQIEKGEAVTISYGELSNAEFLCRYGFVLPESVPTDCILVQSTELLQT-YTAFMNDDVD 300
BLAST of mRNA_H-elongata_contig11280.1046.1 vs. uniprot
Match: A0A329RP34_9STRA (SET domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RP34_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 4.210e-15 Identity = 98/357 (27.45%), Postives = 149/357 (41.74%), Query Frame = 2
Query: 26 SLTLTRACFTVLRLLHERGLGKASPFHAYLGVLPFDHRLPMEWNESEVELLKGTSAESLVGVASLDRQFEAFQ-RVVMLHPTMWDSSVCSKTAFAKGVNWVRSRGFTAFG--DPQMIPGADMFNHDPNKQAVQIGTDGDDHFVMRTVHPVKAGQEVFSSFGNLSNAQLLNSYGFVLPGNPFDNVLIPTKLAVDTCHDTFL------NIDIEGG--KLGKEAAKSTWERRLQMVMSNAGESEDEAFVIAKYDLVPE-KLVDTVQLLTMSND--EEVAYATIAAVAQAKMEQYSPLLDGGKISADSSEKAEKVDRSIGADARVVAEMLVSEEKSILVDLKLQLMGAIMQDGHSSEEDVD 1054
+L L+ T + LL E G S FH Y+ L LP W E ELLK T+A ++ + + +E + + PT+W + V + F + V SR F +P M+P DM NH A I F + + V+ + V S+G+LSNAQLL YGFVLP + + T + +F + D+E +GK + ++ E+ F D E L D + M+++ E Y +AAV Q K ++YS LL A+SSE SI +L E+ + + L LM +++G S +D D
Sbjct: 81 TLQLSGTVKTTVALLAELARGDKSDFHGYIQQLQTTISLPFSWAEKHRELLKYTTAFPILDDKLVLKLYEDYAVPLAKEFPTIWSTEVSTLKKFQWAYSMVSSRAFKVANAQEPTMLPVIDMANHSAENPAAYIVKTDSGSFQLIALRKVEKDEPVTISYGDLSNAQLLCRYGFVLPTLVSSDSIHITSSELTNAFKSFSQNSEDEDEDVEDNIPHVGKXXXXXXANPAKRRKLAQPKNDENALFFSLHGDAEQEFGLGDALLSFVMASNLPTEQLYDVLAAVLQEKDKRYSDLL------AESSEDTSAEVNSI--------HLLCQHERQVCRRILLGLMS--LEEGSDSSDDED 421 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11280.1046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11280.1046.1 >prot_H-elongata_contig11280.1046.1 ID=prot_H-elongata_contig11280.1046.1|Name=mRNA_H-elongata_contig11280.1046.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=331bp MEWNESEVELLKGTSAESLVGVASLDRQFEAFQRVVMLHPTMWDSSVCSKback to top mRNA from alignment at H-elongata_contig11280:3766..7340- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11280.1046.1 ID=mRNA_H-elongata_contig11280.1046.1|Name=mRNA_H-elongata_contig11280.1046.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3575bp|location=Sequence derived from alignment at H-elongata_contig11280:3766..7340- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11280:3766..7340- >mRNA_H-elongata_contig11280.1046.1 ID=mRNA_H-elongata_contig11280.1046.1|Name=mRNA_H-elongata_contig11280.1046.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1986bp|location=Sequence derived from alignment at H-elongata_contig11280:3766..7340- (Himanthalia elongata Himel1 dioecious)back to top |