mRNA_H-elongata_contig112554.1022.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112554.1022.1
Unique NamemRNA_H-elongata_contig112554.1022.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig112554.1022.1 vs. uniprot
Match: D7FMK4_ECTSI (Mediator of RNA polymerase II transcription subunit 14 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMK4_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 7.190e-52
Identity = 85/105 (80.95%), Postives = 96/105 (91.43%), Query Frame = 1 
Query:   13 CQDQLFFMHGALFRARQRMYDVPVAVDVLVGGKYPRLPKGIEYCGGDVDPRPIFELPANRLEILPRVDRAIRLALLRRGGVPSQFTTHVVSNGILTLFVDGEFQV 327
            CQDQ FFMHG LF ARQR+YDVPVAVDVL+GG+YP LPKGIEYCGGD+DPRPIFELPANR EI+ RVDRAIRLALLRRGGVP+QFT+H V NG+LTL V+GEF++
Sbjct:  106 CQDQFFFMHGGLFGARQRLYDVPVAVDVLIGGRYPHLPKGIEYCGGDIDPRPIFELPANREEIVLRVDRAIRLALLRRGGVPNQFTSHTVKNGVLTLTVNGEFEL 210
[Close]
BLAST of mRNA_H-elongata_contig112554.1022.1 vs. uniprot
Match: UPI0020095A09 (mediator of RNA polymerase II transcription subunit 14-like n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI0020095A09)

HSP 1 Score: 72.8 bits (177), Expect = 1.260e-12
Identity = 45/109 (41.28%), Postives = 63/109 (57.80%), Query Frame = 1 
Query:    1 CGWQCQDQLFFMHGALFRARQRMYDVPVAVDVLVGGKYPRLPKGIEYCGGDVDPRPIFELPANRLEILPRVDRAIRLALLRRGGVPSQFTTHVVSNGILTLFVDGEFQV 327
            C  Q  D +FFMH  L +AR  +YDVP A++VL+ G Y RLPK +E  G         + PA     L ++D  +R  LL    +P +FT   VS+G++TL VDGEF++
Sbjct:   91 CFTQAADSMFFMHEGLQQARAPIYDVPSAIEVLLTGNYQRLPKCVEDVGMLGTLNEDQQGPA-----LKKLDTLVRSKLLEVS-LPKEFTEIRVSDGVVTLRVDGEFKI 193
[Close]
BLAST of mRNA_H-elongata_contig112554.1022.1 vs. uniprot
Match: A0A4D9BXU0_SALSN (Mediator of RNA polymerase II transcription subunit 14 n=2 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9BXU0_SALSN)

HSP 1 Score: 70.9 bits (172), Expect = 6.110e-12
Identity = 44/109 (40.37%), Postives = 63/109 (57.80%), Query Frame = 1 
Query:    1 CGWQCQDQLFFMHGALFRARQRMYDVPVAVDVLVGGKYPRLPKGIEYCGGDVDPRPIFELPANRLEILPRVDRAIRLALLRRGGVPSQFTTHVVSNGILTLFVDGEFQV 327
            C  Q  D +FFMH  L +AR  +YDVP A++VL+ G Y RLPK +E  G         + PA     L ++D  +R  LL    +P +FT   VS+G++TL V+GEF++
Sbjct:   91 CFTQAADSMFFMHEGLQQARAPIYDVPSAIEVLLTGNYQRLPKCVEDVGMLGTLNEDQQGPA-----LKKLDTLVRSKLLEVS-LPKEFTEIRVSDGVVTLRVNGEFKI 193
[Close]
BLAST of mRNA_H-elongata_contig112554.1022.1 vs. uniprot
Match: A0A830D088_9LAMI (Mediator of RNA polymerase II transcription subunit 14 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830D088_9LAMI)

HSP 1 Score: 70.9 bits (172), Expect = 6.120e-12
Identity = 43/109 (39.45%), Postives = 62/109 (56.88%), Query Frame = 1 
Query:    1 CGWQCQDQLFFMHGALFRARQRMYDVPVAVDVLVGGKYPRLPKGIEYCGGDVDPRPIFELPANRLEILPRVDRAIRLALLRRGGVPSQFTTHVVSNGILTLFVDGEFQV 327
            C  Q  D +FFMH  L +AR  +YDVP A+++L+GG Y RLPK IE  G         + PA     L +++  +R  LL    +P + T   V +G+++L VDGEF+V
Sbjct:   91 CFTQAADSMFFMHEGLQQARAPIYDVPSAIEILLGGTYQRLPKCIEDVGTQSTLNEDQQGPA-----LKKLETLVRSKLLEIS-LPKEITEIKVYDGVVSLRVDGEFKV 193
[Close]
BLAST of mRNA_H-elongata_contig112554.1022.1 vs. uniprot
Match: A0A2U1QFK7_ARTAN (Mediator of RNA polymerase II transcription subunit 14 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QFK7_ARTAN)

HSP 1 Score: 69.3 bits (168), Expect = 2.120e-11
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 1 
Query:    1 CGWQCQDQLFFMHGALFRARQRMYDVPVAVDVLVGGKYPRLPKGIEYCGGDVDPRPIFELPANRLEILPRVDRAIRLALLRRGGVPSQFTTHVVSNGILTLFVDGEFQV 327
            C  Q  D +FFMH  L +AR  +YDVP A+++L+ G Y RLPK    C  DV  +        +  +L ++D  +R  LL    +P +F+   +S+G +TL V GEF+V
Sbjct:   90 CFTQAADSMFFMHEGLQQARAPIYDVPSAIEILLTGTYERLPK----CTEDVGIQSTLTEKQQK-PVLKKLDTLVRSKLLETA-LPKEFSEVKISDGTVTLIVQGEFKV 192
[Close]
BLAST of mRNA_H-elongata_contig112554.1022.1 vs. uniprot
Match: S8E9Y8_9LAMI (Mediator of RNA polymerase II transcription subunit 14 (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8E9Y8_9LAMI)

HSP 1 Score: 67.8 bits (164), Expect = 7.350e-11
Identity = 42/109 (38.53%), Postives = 61/109 (55.96%), Query Frame = 1 
Query:    1 CGWQCQDQLFFMHGALFRARQRMYDVPVAVDVLVGGKYPRLPKGIEYCGGDVDPRPIFELPANRLEILPRVDRAIRLALLRRGGVPSQFTTHVVSNGILTLFVDGEFQV 327
            C  Q  D +FFMH  L +AR  +YDVP A+++L+ G Y RLPK IE  G         + PA R     ++D  +R  LL    +P + +   VS+G+++L  DGEF+V
Sbjct:   91 CFTQAADSMFFMHEGLQQARAPIYDVPSAIEILLSGTYQRLPKCIEDVGTQNTLTEDQQGPALR-----KLDTLVRSKLLDVS-LPKELSRVSVSDGVVSLRADGEFEV 193
[Close]
BLAST of mRNA_H-elongata_contig112554.1022.1 vs. uniprot
Match: F0W2P3_9STRA (Mediator of RNA polymerase II transcription subunit 14 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W2P3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.000e-9
Identity = 39/107 (36.45%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:   10 QCQDQLFFMHGALFRARQRMYDVPVAVDVLVGGKYPRLPKGIEYCGGDVDPRPIFELPANRL-EILPRVDRAIRLALLRRGGVPSQFTTHVVSNGILTLFVDGEFQV 327
            +  D+LFFMH  L RA++RMYD+  A+DVL  G Y RLP  IE     + PR   E P + L +    ++  IR  L++   +P QFT+  + +G +     G+F++
Sbjct:   95 ETNDRLFFMHANLDRAKERMYDLSTAIDVLYKGSYLRLPSVIERA---MYPR---EFPPHNLTKTADTLNNLIRYRLIQ-SNIPKQFTSISLDHGFVYFTCSGQFEI 194
[Close]
BLAST of mRNA_H-elongata_contig112554.1022.1 vs. uniprot
Match: A0A085LYE7_9BILA (Mediator of RNA polymerase II transcription subunit 14 n=3 Tax=Trichuris TaxID=36086 RepID=A0A085LYE7_9BILA)

HSP 1 Score: 51.6 bits (122), Expect = 3.400e-5
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 1 
Query:   19 DQLFFM-HGALFRARQRMYDVPVAVDVLVGGKYPRLPKGIEYCGGDVDPRPIFELPANRLEILPRVDRAIRLALLRRGGV-PSQFTTHVVSNGILTLFVDGEFQVS 330
            D+LF + +  L  AR   + +P+AVDVL  G YPRL + IE     V P  I   PA    I  R+++ ++  ++ + G+ P +     VS+G+ T  V GEF+V+
Sbjct:  116 DRLFQLCNTVLLSARLPAFQIPIAVDVLTLGTYPRLSRAIEQRF--VPPEKIT--PAELQSITRRLNQVVKRRIVSQLGILPKRMRCFEVSDGMATFCVAGEFEVT 217
[Close]
BLAST of mRNA_H-elongata_contig112554.1022.1 vs. uniprot
Match: A0A5S6R235_TRIMR (Mediator of RNA polymerase II transcription subunit 14 n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6R235_TRIMR)

HSP 1 Score: 50.4 bits (119), Expect = 8.620e-5
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 1 
Query:   19 DQLFFM-HGALFRARQRMYDVPVAVDVLVGGKYPRLPKGIEYCGGDVDPRPIFELPANRLEILPRVDRAIRLALLRRGGV-PSQFTTHVVSNGILTLFVDGEFQVS 330
            D+LF + +  L  AR   + VP+AVDVL  G YPRL K IE     V P  I   P+    +  R+++ ++  ++ +  V P +  +  VS+G++T  V GEF+ +
Sbjct:  116 DRLFQLCNSVLLNARLPAFQVPIAVDVLTLGTYPRLSKAIEQRF--VPPEKIT--PSELQSVTRRLNQIVKRRIISQLAVLPKRMRSFEVSDGMVTFRVAGEFEAT 217
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112554.1022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FMK4_ECTSI7.190e-5280.95Mediator of RNA polymerase II transcription subuni... [more]
UPI0020095A091.260e-1241.28mediator of RNA polymerase II transcription subuni... [more]
A0A4D9BXU0_SALSN6.110e-1240.37Mediator of RNA polymerase II transcription subuni... [more]
A0A830D088_9LAMI6.120e-1239.45Mediator of RNA polymerase II transcription subuni... [more]
A0A2U1QFK7_ARTAN2.120e-1137.61Mediator of RNA polymerase II transcription subuni... [more]
S8E9Y8_9LAMI7.350e-1138.53Mediator of RNA polymerase II transcription subuni... [more]
F0W2P3_9STRA3.000e-936.45Mediator of RNA polymerase II transcription subuni... [more]
A0A085LYE7_9BILA3.400e-534.91Mediator of RNA polymerase II transcription subuni... [more]
A0A5S6R235_TRIMR8.620e-533.96Mediator of RNA polymerase II transcription subuni... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112554contigH-elongata_contig112554:660..1535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.1
Seed ortholog evalue1.1e-45
Seed eggNOG ortholog2880.D7FMK4
Preferred nameMED14
KEGG koko:K15156
KEGG Pathwayko04919,map04919
GOsGO:0000122,GO:0000428,GO:0001085,GO:0001091,GO:0001093,GO:0001098,GO:0001099,GO:0001103,GO:0003674,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0014070,GO:0016070,GO:0016591,GO:0016592,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019827,GO:0023052,GO:0030374,GO:0030518,GO:0030521,GO:0030522,GO:0030880,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032870,GO:0032991,GO:0033993,GO:0034641,GO:0034645,GO:0034654,GO:0035257,GO:0038023,GO:0042221,GO:0042809,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043401,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051427,GO:0051716,GO:0055029,GO:0060089,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070491,GO:0070847,GO:0070887,GO:0071310,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071704,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:0098727,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.regulation of transcription by RNA polymerase II
EggNOG OGsKOG1875@1,KOG1875@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021
Hectar predicted targeting categoryother localisation
Exons2
Model size339
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929647.4452677-CDS-H-elongata_contig112554:659..8211622929647.4452677-CDS-H-elongata_contig112554:659..821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112554 660..821 -
1691679104.3736982-CDS-H-elongata_contig112554:659..8211691679104.3736982-CDS-H-elongata_contig112554:659..821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112554 660..821 -
1622929647.4638796-CDS-H-elongata_contig112554:1358..15351622929647.4638796-CDS-H-elongata_contig112554:1358..1535Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112554 1359..1535 -
1691679104.3855565-CDS-H-elongata_contig112554:1358..15351691679104.3855565-CDS-H-elongata_contig112554:1358..1535Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112554 1359..1535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112554.1022.1prot_H-elongata_contig112554.1022.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112554 660..1535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112554.1022.1

>prot_H-elongata_contig112554.1022.1 ID=prot_H-elongata_contig112554.1022.1|Name=mRNA_H-elongata_contig112554.1022.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
CGWQCQDQLFFMHGALFRARQRMYDVPVAVDVLVGGKYPRLPKGIEYCGG
DVDPRPIFELPANRLEILPRVDRAIRLALLRRGGVPSQFTTHVVSNGILT
LFVDGEFQVSAL*
back to top

mRNA from alignment at H-elongata_contig112554:660..1535-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112554.1022.1 ID=mRNA_H-elongata_contig112554.1022.1|Name=mRNA_H-elongata_contig112554.1022.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=876bp|location=Sequence derived from alignment at H-elongata_contig112554:660..1535- (Himanthalia elongata Himel1 dioecious)
TGCGGTTGGCAGTGCCAGGATCAGTTGTTCTTCATGCACGGGGCATTGTT
TCGCGCGCGTCAGCGAATGTACGACGTGCCCGTGGCAGTCGATGTGCTGG
TTGGCGGGAAATACCCAAGGCTACCGAAAGGGATTGAGTATTGCGGGGGA
GATGTCGATCCGCGCCCCATCTTCGAGGTATTACAAAATCCATAATATCG
CTAGCTCTAATTTGACAGCAGGACGTTGAAGTTGGATATGCCCTGCCCGC
CGGTCTTCAGGTATTTCATACTATTAAGAGAGCTTTTTCGCAGATGGTCT
TGTCCATTACTGGTACTGATACTTGTGCTGTACAATCTACTGCACTACAC
ACACTCTACTAGCATCGACTTAGCTATGGTAGACTTTCTCTTTCTTTAAA
CGCCTTAGTGTAAACCCAGTCATTCCAGGCGACAAGAGTTTGTGGATACC
CAAAATTTTATTCCCATGCTTGGAATTTTTACAAGAGTACCTGCTACGCG
GTTCGATTGTAACAGTCAAACTACACATCTCCGAGATATCGAGGAAATAA
ACAGGTACCAGTAGTAACTCACCGCTGTTCGCCAGTCGATTCCACCATGA
AAAAACTAATTCTTTGAAATACAGTGCAGTTCCCATTTTGTATGAGTGAG
AGTGAACGTCAGGTGCGATCATCCTGATGCTCCTGCGACACCCCTGAACA
CACCCAAACTGCAGCTACCCGCCAACCGATTGGAGATCCTGCCGAGAGTT
GACCGCGCGATCCGATTGGCTCTTTTGAGGAGAGGCGGCGTCCCCAGCCA
GTTTACTACTCACGTTGTCTCGAATGGCATTCTTACACTCTTCGTCGATG
GGGAGTTCCAGGTATCAGCTCTCTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig112554:660..1535-

>mRNA_H-elongata_contig112554.1022.1 ID=mRNA_H-elongata_contig112554.1022.1|Name=mRNA_H-elongata_contig112554.1022.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig112554:660..1535- (Himanthalia elongata Himel1 dioecious)
TGCGGTTGGCAGTGCCAGGATCAGTTGTTCTTCATGCACGGGGCATTGTT
TCGCGCGCGTCAGCGAATGTACGACGTGCCCGTGGCAGTCGATGTGCTGG
TTGGCGGGAAATACCCAAGGCTACCGAAAGGGATTGAGTATTGCGGGGGA
GATGTCGATCCGCGCCCCATCTTCGAGTGCGGTTGGCAGTGCCAGGATCA
GTTGTTCTTCATGCACGGGGCATTGTTTCGCGCGCGTCAGCGAATGTACG
ACGTGCCCGTGGCAGTCGATGTGCTGGTTGGCGGGAAATACCCAAGGCTA
CCGAAAGGGATTGAGTATTGCGGGGGAGATGTCGATCCGCGCCCCATCTT
CGAGCTACCCGCCAACCGATTGGAGATCCTGCCGAGAGTTGACCGCGCGA
TCCGATTGGCTCTTTTGAGGAGAGGCGGCGTCCCCAGCCAGTTTACTACT
CACGTTGTCTCGAATGGCATTCTTACACTCTTCGTCGATGGGGAGTTCCA
GGTATCAGCTCTCTAGCTACCCGCCAACCGATTGGAGATCCTGCCGAGAG
TTGACCGCGCGATCCGATTGGCTCTTTTGAGGAGAGGCGGCGTCCCCAGC
CAGTTTACTACTCACGTTGTCTCGAATGGCATTCTTACACTCTTCGTCGA
TGGGGAGTTCCAGGTATCAGCTCTCTAG
back to top