mRNA_H-elongata_contig112058.977.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig112058.977.1 vs. uniprot
Match: A0A6H5KP90_9PHAE (TRUD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP90_9PHAE) HSP 1 Score: 393 bits (1010), Expect = 1.830e-125 Identity = 221/329 (67.17%), Postives = 250/329 (75.99%), Query Frame = 1
Query: 1 QGPIALLGNFSYVGQPLKLGNLSGNRFGIVLRNVNLPGFPAPGGEGESVNRAQSGPGDQAAGSPEAVNAEAARTEAEVVAAAGARLKKTIDHRCARVKERGFINYFGLQRFGTGGAPTSEVGLAMLKEDWEGAVRLVMTPRIGENEATHASKVHYLKNPTDIEGTLNKLPFFMHAEKSMMQVLLRGGANAHVDALKAVPKNLQLMYLHAFQSLLWNLAASERIELYGREGVVEGDLVFPRDS---TVSIDSSVADPEAGPFDSEGSALLNHEGGADDDDEATESRDVEDQDAKRPRKTPARLPDVHMVTNEDVKKRTFRLTDVVLPMPG 978
QG I LLGNFSYV +PLKLG+LSGNRFGIVLRN++LP GGE + G Q A + EA EA EA VV GA+LK+T+D RCA VKERGFINYFGLQRFG+GGAPTSEVGLAMLKEDW GAVRL+MTPR+GENEATHASKVHYLKNPTDI+GTLNKLPFFM AEKSMMQ LL+GG NAH+DALKAVPKNLQLMYLHAFQSLLWNLAASERI+LYGR+ VEGDLVFPRDS + D+++ DP G +A+ E D +DE E + E AKR + LP VH+VT EDV++ TFRLTDVVLPMPG
Sbjct: 472 QGSIVLLGNFSYVAEPLKLGDLSGNRFGIVLRNLSLPS----GGENGAXXXXXGG---QDASADEASKKEAEYAEAAVVET-GAKLKETVDRRCAWVKERGFINYFGLQRFGSGGAPTSEVGLAMLKEDWAGAVRLIMTPRMGENEATHASKVHYLKNPTDIQGTLNKLPFFMDAEKSMMQALLKGGPNAHIDALKAVPKNLQLMYLHAFQSLLWNLAASERIKLYGRDAAVEGDLVFPRDSPAAAIEDDATLVDPAIGA-----AAVDAAERDGDGEDEGGEGQQPE---AKRAKTAETSLPPVHVVTKEDVEEGTFRLTDVVLPMPG 784
BLAST of mRNA_H-elongata_contig112058.977.1 vs. uniprot
Match: A0A8J4CFZ8_9CHLO (TRUD domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CFZ8_9CHLO) HSP 1 Score: 173 bits (439), Expect = 6.050e-45 Identity = 122/320 (38.12%), Postives = 168/320 (52.50%), Query Frame = 1
Query: 19 LGNFSYVGQPLKLGNLSGNRFGIVLRNVNLPGFPAPGGEGESVNRAQSGPGDQAAGSPEAVNAEAARTEAEVVAAAGARLKKTIDHRCARVKERGFINYFGLQRFGTGGAPTSEVGLAMLKEDWEGAVRLVMTPRIGENEATHASKVHYLKNPTDIEGTLNKLPFFMHAEKSMMQVLLRGGANAHVDALKAVPKNLQLMYLHAFQSLLWNLAASERIELYGREGVVEGDLVFPRDSTVSIDSSVADPEAGPFDSEGSALLNHEGGADDDDEATESRDVEDQDAKRPRKTPARLPDVHMVTNEDVKKRTFRLTDVVLPMPG 978
+GNFS+ + L+LG LSGN F +++R+V L P P + D P+ + + +++VVA + C V GFINYFGLQRFGTGGA T EVG A+L+ ++E A RLV+T R E ++ + N D +G L +LP FM E++++ VL A+ A+KAVP+ +++MYLHA+QS +WN AAS RI YGR+GVV GDLV PR S + EG LL GG DD E E D + A RL + T DV+ + + DVVLP+PG
Sbjct: 320 VGNFSFCDEGLRLGCLSGNEFHLLMRDVRLAS-PEPPAVAXXXXXXTAITADGEEAGPKGTSG--TKIDSDVVA--------QVTAACETVARNGFINYFGLQRFGTGGAATQEVGKALLRGEYEKAARLVLTGRADERSDYADARRLFFDNG-DAKGALRRLPHFMLGERAVLSVLATDPAD-WAGAMKAVPRTMRMMYLHAWQSYVWNSAASHRIRTYGRDGVVAGDLVLPRSSATAAGG------------EGLMLL---GGVDDSGEGMEPEDESEGSAGT---VTRRLALARLATEADVEAGRYNIFDVVLPLPG 608
BLAST of mRNA_H-elongata_contig112058.977.1 vs. uniprot
Match: A0A8J4AYV4_9CHLO (TRUD domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AYV4_9CHLO) HSP 1 Score: 174 bits (440), Expect = 6.700e-45 Identity = 119/320 (37.19%), Postives = 165/320 (51.56%), Query Frame = 1
Query: 19 LGNFSYVGQPLKLGNLSGNRFGIVLRNVNLPGFPAPGGEGESVNRAQSGPGDQAAGSPEAVNAEAARTEAEVVAAAGARLKKTIDHRCARVKERGFINYFGLQRFGTGGAPTSEVGLAMLKEDWEGAVRLVMTPRIGENEATHASKVHYLKNPTDIEGTLNKLPFFMHAEKSMMQVLLRGGANAHVDALKAVPKNLQLMYLHAFQSLLWNLAASERIELYGREGVVEGDLVFPRDSTVSIDSSVADPEAGPFDSEGSALLNHEGGADDDDEATESRDVEDQDAKRPRKTPARLPDVHMVTNEDVKKRTFRLTDVVLPMPG 978
+GNFS+ L+LG L GN F +++R+V L G P E+V G + A + E +V+ + C V GFINYFGLQRFGTGGA T EVG A+L+ ++E A RLV+T R E A +A D +G L +LP FM E++++ VL + A++AVP+ +++MYLHA+QS +WN +AS RI YGR+ VV GDLV PR + S G+ L GG DD E E+ D + A RL V +VT+ DV+ + + DVVLP+PG
Sbjct: 462 VGNFSFCDDGLRLGCLLGNEFHLLMRDVRLVGSEPPAATAEAVTAEGEEMGTE--------GASGTKVEVDVIG--------QVTIACETVARSGFINYFGLQRFGTGGAATQEVGKALLRGEYERAARLVLTGRADER-ADYAEARKLFSEMGDAKGALRRLPHFMLGERAVLAVLATNPTD-WAGAMRAVPRTMRMMYLHAWQSYVWNSSASHRIRTYGRDRVVAGDLVLPRSGATA--------------SGGAESLELGGGVDDSGEGMEAEDGSEGSAGT---VSRRLALVRLVTDADVEAGRYDIFDVVLPLPG 746
BLAST of mRNA_H-elongata_contig112058.977.1 vs. uniprot
Match: A0A8J4GCG3_9CHLO (TRUD domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GCG3_9CHLO) HSP 1 Score: 173 bits (439), Expect = 9.000e-45 Identity = 122/320 (38.12%), Postives = 168/320 (52.50%), Query Frame = 1
Query: 19 LGNFSYVGQPLKLGNLSGNRFGIVLRNVNLPGFPAPGGEGESVNRAQSGPGDQAAGSPEAVNAEAARTEAEVVAAAGARLKKTIDHRCARVKERGFINYFGLQRFGTGGAPTSEVGLAMLKEDWEGAVRLVMTPRIGENEATHASKVHYLKNPTDIEGTLNKLPFFMHAEKSMMQVLLRGGANAHVDALKAVPKNLQLMYLHAFQSLLWNLAASERIELYGREGVVEGDLVFPRDSTVSIDSSVADPEAGPFDSEGSALLNHEGGADDDDEATESRDVEDQDAKRPRKTPARLPDVHMVTNEDVKKRTFRLTDVVLPMPG 978
+GNFS+ + L+LG LSGN F +++R+V L P P + D P+ + + +++VVA + C V GFINYFGLQRFGTGGA T EVG A+L+ ++E A RLV+T R E ++ + N D +G L +LP FM E++++ VL A+ A+KAVP+ +++MYLHA+QS +WN AAS RI YGR+GVV GDLV PR S + EG LL GG DD E E D + A RL + T DV+ + + DVVLP+PG
Sbjct: 447 VGNFSFCDEGLRLGCLSGNEFHLLMRDVRLAS-PEPPAVAXXXXXXTAITADGEEAGPKGTSG--TKIDSDVVA--------QVTAACETVARNGFINYFGLQRFGTGGAATQEVGKALLRGEYEKAARLVLTGRADERSDYADARRLFFDNG-DAKGALRRLPHFMLGERAVLSVLATDPAD-WAGAMKAVPRTMRMMYLHAWQSYVWNSAASHRIRTYGRDGVVAGDLVLPRSSATAAGG------------EGLMLL---GGVDDSGEGMEPEDESEGSAGT---VTRRLALARLATEADVEAGRYNIFDVVLPLPG 735
BLAST of mRNA_H-elongata_contig112058.977.1 vs. uniprot
Match: A0A834SK78_9FABA (Multisubstrate pseudouridine synthase 7 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834SK78_9FABA) HSP 1 Score: 156 bits (395), Expect = 2.960e-39 Identity = 92/227 (40.53%), Postives = 136/227 (59.91%), Query Frame = 1
Query: 301 GFINYFGLQRFGTGGAPTSEVGLAMLKEDWEGAVRLVMTPRIGENEATHASKVHYLKNPTDIEGTLNKLPFFMHAEKSMMQVLLRGGANAHVDALKAVPKNLQLMYLHAFQSLLWNLAASERIELYGREGVVEGDLVFPRDSTVSIDSSVADPE-AGPFDSEGSALLNHEGGADDDDEATESRDVEDQDAKRPRKTPARLPDVHMVTNEDVKKRTFRLTDVVLPMPG 978
GFINYFGLQRFG+G PT +G A+L+ +W+ AV +++ PR GE +A ++ +Y KN D+EGTL +LP + AE++++Q L + N ++ ALKA+P+ L++MY+H++QS LWN AAS R++ YG E VV GDLV+ +D+ V D+ D E D + LN E AD DV ++ V VT +D+ + + DV+LPMPG
Sbjct: 306 GFINYFGLQRFGSGSVPTHLIGAALLRGEWKLAVDMILDPRTGERDAITKAREYY-KNSNDVEGTLKQLPRHLVAERAVLQCLKKSPEN-YLQALKAIPRTLRMMYVHSYQSYLWNHAASLRVQKYGTEQVVLGDLVYCKDNPVGKDTGFVDNELTNGCDDRYDSSLNEEEFAD--------MDVREESNSH----------VKAVTADDLNSGYYTIEDVILPMPG 512
BLAST of mRNA_H-elongata_contig112058.977.1 vs. uniprot
Match: A0A2P6TL97_CHLSO (Multisubstrate pseudouridine synthase 7-like n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TL97_CHLSO) HSP 1 Score: 156 bits (394), Expect = 5.770e-39 Identity = 94/235 (40.00%), Postives = 130/235 (55.32%), Query Frame = 1
Query: 19 LGNFSYVGQPLKLGNLSGNRFGIVLRNVNLPGFPAPGGEGESVNRAQSGPGDQAAGSPEAVNAEAARTEAEVVAAAGARLKKTIDHRCARVKERGFINYFGLQRFGTGGAPTSEVGLAMLKEDWEGAVRLVMTPRIGENEATHASKVHYLKNPTDIEGTLNKLPFFMHAEKSMMQVLLRGGANAHVDALKAVPKNLQLMYLHAFQSLLWNLAASERIELYGREGVVEGDLVFPRD 723
LGNF +V + L+LG+L GNRF +VLRN+ QA+ + A AEAA VAAA L+++ GFINY+GLQRFG+G PT +G ++L+ W AVR ++TPR DIEG L ++P F+ AE ++QVL R G N ++ A+ A+P+NL+ +Y+HA+QS LWN AAS R+E +G E VV GDLV +D
Sbjct: 313 LGNFEFVSEQLRLGDLRGNRFELVLRNI------------------------QASSAGSAAEAEAA------VAAAAEGLRRS-----------GFINYYGLQRFGSGAVPTHRIGQSLLRGQWREAVRQLLTPRPDCTREDQVEAARLYLEEGDIEGALARMPRFLVAEPMLLQVLKRQGPNDYLSAVMALPRNLRTIYIHAYQSYLWNAAASHRVETFGAERVVAGDLVLLQD 506
BLAST of mRNA_H-elongata_contig112058.977.1 vs. uniprot
Match: L1J8P3_GUITC (TRUD domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J8P3_GUITC) HSP 1 Score: 154 bits (390), Expect = 9.590e-39 Identity = 111/322 (34.47%), Postives = 163/322 (50.62%), Query Frame = 1
Query: 19 LGNFSYVGQPLKLGNLSGNRFGIVLRNVNLPGFPAPGGEGESVNRAQSGPGDQAAGSPEAVNAEAARTEAEVVAAAGARLKKTIDHRCARVKERGFINYFGLQRFGTGGAPTSEVGLAMLKEDWEGAVRLVMTPRIGENEATHASKVHYLKNPTDIEGTLNKLPFFMHAEKSMMQVLLRGGANAHVDALKAVPKNLQLMYLHAFQSLLWNLAASERIELYGREGVVEGDLVFPRDSTVSIDSSVADPEAGPFDSEGSALLNHEGGADDDDEATES--RDVEDQDAKRPRKTPARLPDVHMVTNEDVKKRTFRLTDVVLPMPG 978
+GN S Q LKLG L GNRF I+LR+V + GS EA+ C +KE+GFINYFG QRFGT PT +G +L EDWE A L++ PR GE E + ++ + K D L + P +M AE++++ V + G N+H++AL+A+P+NL+LMY+H++QS +WN SER+ +YG++ VEGDLV ++S + E+ FD EG DE+T S E+Q++ + T + V ++ DV K + + DVVLP+PG
Sbjct: 245 IGNLSVCEQTLKLGQLYGNRFQIILRDVQA-----------------------SEGSIEAL--------------------------CNSLKEKGFINYFGKQRFGTSSIPTYSIGREILHEDWEKAADLILCPRDGEKEESKTAREKF-KEHKDPAKALEEFPRWMFAERTLLDVYKKRGMNSHLNALQALPRNLRLMYIHSYQSYIWNKMVSERLRMYGKDRPVEGDLV--------LESKDVESES-LFDLEGV------------DESTLSGANASEEQESDHDKWTKSHPKKVKVLAASDVDK--YSIFDVVLPLPG 493
BLAST of mRNA_H-elongata_contig112058.977.1 vs. uniprot
Match: UPI001CB9CF69 (multisubstrate pseudouridine synthase 7 isoform X1 n=2 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9CF69) HSP 1 Score: 155 bits (392), Expect = 1.040e-38 Identity = 92/232 (39.66%), Postives = 135/232 (58.19%), Query Frame = 1
Query: 295 ERGFINYFGLQRFGTGGAPTSEVGLAMLKEDWEGAVRLVMTPRIGENEATHASKVHYLKNPTDIEGTLNKLPFFMHAEKSMMQVLLRGGANAHVDALKAVPKNLQLMYLHAFQSLLWNLAASERIELYGREGVVEGDLVFPRDSTVS----IDSSVADPEAGPFDSEGSALLNHEGGADDDDEATESRDVEDQDAKRPRKTPARLPDVHMVTNEDVKKRTFRLTDVVLPMPG 978
+ GFINYFG+QRFG+G PT +G +LK +WE AVR+++ PR GE + + + +Y K DI+GTL +LP F+ AEK+++Q L + N ++ ALKAVP+ L++MY+H++QS LWN AAS R++ YG + VV GDLV+ + + ID SV + E GP ES + + D + V +V NED+ + +TDVVLP+PG
Sbjct: 376 KHGFINYFGMQRFGSGSIPTHLIGAKLLKGEWEEAVRMILDPRDGERDDIRSIREYY-KESEDIDGTLRQLPRFLVAEKAILQCLKKCPGN-YLQALKAVPRTLRMMYVHSYQSYLWNHAASMRVQKYGTDHVVLGDLVYCNEENSNEIKQIDDSVYE-EIGP---------------------NESSENDHLDESETHVSEGNCTSVKVVNNEDIASGHYTVTDVVLPLPG 583
BLAST of mRNA_H-elongata_contig112058.977.1 vs. uniprot
Match: A0A7S1SQ98_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SQ98_9CHLO) HSP 1 Score: 144 bits (362), Expect = 1.130e-38 Identity = 77/141 (54.61%), Postives = 97/141 (68.79%), Query Frame = 1
Query: 289 VKERGFINYFGLQRFGTGGAPTSEVGLAMLKEDWEGAVRLVMTPRIGENEATHASKVHYLKNPTDIEGTLNKLPFFMHAEKSMMQVLLRGGANAHVDALKAVPKNLQLMYLHAFQSLLWNLAASERIELYGREGVVEGDLV 711
+ +RGF+NYFGLQRFG GGA T EVG+ +LK WE AVR +M PR E + A K YL+ DI+G L LP FM E+SM++ L R + V AL +P+N++ MYLH++QSLLWNLAASERI L+G E V GDLV
Sbjct: 26 IAQRGFVNYFGLQRFGQGGAGTHEVGVLLLKGHWEAAVRAIMAPRSDERVDSLAVKKAYLEQG-DIKGALAALPRFMAVERSMLEALGRNPKD-FVGALGCIPRNMRTMYLHSYQSLLWNLAASERIALFGAEAPVAGDLV 164
BLAST of mRNA_H-elongata_contig112058.977.1 vs. uniprot
Match: A0A2P6V0Y5_9CHLO (Multisubstrate pseudouridine synthase 7 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0Y5_9CHLO) HSP 1 Score: 154 bits (388), Expect = 4.160e-38 Identity = 90/233 (38.63%), Postives = 127/233 (54.51%), Query Frame = 1
Query: 289 VKERGFINYFGLQRFGTGGAPTSEVGLAMLKEDWEGAVRLVMTPRIGENEATHASKVHYLKNPTDIEGTLNKLPFFMHAEKSMMQVLLRGGANAHVDALKAVPKNLQLMYLHAFQSLLWNLAASERIELYGREGVVEGDLVFPRDSTVSIDSSVADPEAGPF---DSEGSALLNHEGGADDDDEATESRDVEDQDAKRPRKTPARLPDVHMVTNEDVKKRTFRLTDVVLPMPG 978
+++ GF+NY+GLQRFGTGG PT VG A+L+ W AVR+++TPR + A A DIEG L ++P F+ AE ++Q L + G + +++AL +P+NL+ MY+HA+QS LWN AAS RI YG V+GDLV + + + A P D+EG A EG E RD A +VH+VT + T+ + DVVLP+PG
Sbjct: 312 LRDTGFVNYYGLQRFGTGGVPTHRVGAALLRGQWREAVRMLLTPRPDCSRADQAEACRLYLEEGDIEGALRRMPRFLVAEPLLLQALKQHGPSGYLNALSTLPRNLRTMYIHAYQSYLWNSAASHRIATYGAAAAVQGDLVLTQSGDAA--RAAARNRGRPRLQEDAEGEAAAGAEG---------EGRDAAXXXXXXXXXXXAAGEEVHVVTAAEAAAGTYSIDDVVLPLPG 533 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112058.977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig112058.977.1 >prot_H-elongata_contig112058.977.1 ID=prot_H-elongata_contig112058.977.1|Name=mRNA_H-elongata_contig112058.977.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=327bp QGPIALLGNFSYVGQPLKLGNLSGNRFGIVLRNVNLPGFPAPGGEGESVNback to top mRNA from alignment at H-elongata_contig112058:176..1966- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig112058.977.1 ID=mRNA_H-elongata_contig112058.977.1|Name=mRNA_H-elongata_contig112058.977.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1791bp|location=Sequence derived from alignment at H-elongata_contig112058:176..1966- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig112058:176..1966- >mRNA_H-elongata_contig112058.977.1 ID=mRNA_H-elongata_contig112058.977.1|Name=mRNA_H-elongata_contig112058.977.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1962bp|location=Sequence derived from alignment at H-elongata_contig112058:176..1966- (Himanthalia elongata Himel1 dioecious)back to top |