mRNA_H-elongata_contig112058.977.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112058.977.1
Unique NamemRNA_H-elongata_contig112058.977.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig112058.977.1 vs. uniprot
Match: A0A6H5KP90_9PHAE (TRUD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP90_9PHAE)

HSP 1 Score: 393 bits (1010), Expect = 1.830e-125
Identity = 221/329 (67.17%), Postives = 250/329 (75.99%), Query Frame = 1
Query:    1 QGPIALLGNFSYVGQPLKLGNLSGNRFGIVLRNVNLPGFPAPGGEGESVNRAQSGPGDQAAGSPEAVNAEAARTEAEVVAAAGARLKKTIDHRCARVKERGFINYFGLQRFGTGGAPTSEVGLAMLKEDWEGAVRLVMTPRIGENEATHASKVHYLKNPTDIEGTLNKLPFFMHAEKSMMQVLLRGGANAHVDALKAVPKNLQLMYLHAFQSLLWNLAASERIELYGREGVVEGDLVFPRDS---TVSIDSSVADPEAGPFDSEGSALLNHEGGADDDDEATESRDVEDQDAKRPRKTPARLPDVHMVTNEDVKKRTFRLTDVVLPMPG 978
            QG I LLGNFSYV +PLKLG+LSGNRFGIVLRN++LP     GGE  +      G   Q A + EA   EA   EA VV   GA+LK+T+D RCA VKERGFINYFGLQRFG+GGAPTSEVGLAMLKEDW GAVRL+MTPR+GENEATHASKVHYLKNPTDI+GTLNKLPFFM AEKSMMQ LL+GG NAH+DALKAVPKNLQLMYLHAFQSLLWNLAASERI+LYGR+  VEGDLVFPRDS    +  D+++ DP  G      +A+   E   D +DE  E +  E   AKR +     LP VH+VT EDV++ TFRLTDVVLPMPG
Sbjct:  472 QGSIVLLGNFSYVAEPLKLGDLSGNRFGIVLRNLSLPS----GGENGAXXXXXGG---QDASADEASKKEAEYAEAAVVET-GAKLKETVDRRCAWVKERGFINYFGLQRFGSGGAPTSEVGLAMLKEDWAGAVRLIMTPRMGENEATHASKVHYLKNPTDIQGTLNKLPFFMDAEKSMMQALLKGGPNAHIDALKAVPKNLQLMYLHAFQSLLWNLAASERIKLYGRDAAVEGDLVFPRDSPAAAIEDDATLVDPAIGA-----AAVDAAERDGDGEDEGGEGQQPE---AKRAKTAETSLPPVHVVTKEDVEEGTFRLTDVVLPMPG 784          
BLAST of mRNA_H-elongata_contig112058.977.1 vs. uniprot
Match: A0A8J4CFZ8_9CHLO (TRUD domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CFZ8_9CHLO)

HSP 1 Score: 173 bits (439), Expect = 6.050e-45
Identity = 122/320 (38.12%), Postives = 168/320 (52.50%), Query Frame = 1
Query:   19 LGNFSYVGQPLKLGNLSGNRFGIVLRNVNLPGFPAPGGEGESVNRAQSGPGDQAAGSPEAVNAEAARTEAEVVAAAGARLKKTIDHRCARVKERGFINYFGLQRFGTGGAPTSEVGLAMLKEDWEGAVRLVMTPRIGENEATHASKVHYLKNPTDIEGTLNKLPFFMHAEKSMMQVLLRGGANAHVDALKAVPKNLQLMYLHAFQSLLWNLAASERIELYGREGVVEGDLVFPRDSTVSIDSSVADPEAGPFDSEGSALLNHEGGADDDDEATESRDVEDQDAKRPRKTPARLPDVHMVTNEDVKKRTFRLTDVVLPMPG 978
            +GNFS+  + L+LG LSGN F +++R+V L   P P           +   D     P+  +    + +++VVA         +   C  V   GFINYFGLQRFGTGGA T EVG A+L+ ++E A RLV+T R  E      ++  +  N  D +G L +LP FM  E++++ VL    A+    A+KAVP+ +++MYLHA+QS +WN AAS RI  YGR+GVV GDLV PR S  +               EG  LL   GG DD  E  E  D  +  A        RL    + T  DV+   + + DVVLP+PG
Sbjct:  320 VGNFSFCDEGLRLGCLSGNEFHLLMRDVRLAS-PEPPAVAXXXXXXTAITADGEEAGPKGTSG--TKIDSDVVA--------QVTAACETVARNGFINYFGLQRFGTGGAATQEVGKALLRGEYEKAARLVLTGRADERSDYADARRLFFDNG-DAKGALRRLPHFMLGERAVLSVLATDPAD-WAGAMKAVPRTMRMMYLHAWQSYVWNSAASHRIRTYGRDGVVAGDLVLPRSSATAAGG------------EGLMLL---GGVDDSGEGMEPEDESEGSAGT---VTRRLALARLATEADVEAGRYNIFDVVLPLPG 608          
BLAST of mRNA_H-elongata_contig112058.977.1 vs. uniprot
Match: A0A8J4AYV4_9CHLO (TRUD domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AYV4_9CHLO)

HSP 1 Score: 174 bits (440), Expect = 6.700e-45
Identity = 119/320 (37.19%), Postives = 165/320 (51.56%), Query Frame = 1
Query:   19 LGNFSYVGQPLKLGNLSGNRFGIVLRNVNLPGFPAPGGEGESVNRAQSGPGDQAAGSPEAVNAEAARTEAEVVAAAGARLKKTIDHRCARVKERGFINYFGLQRFGTGGAPTSEVGLAMLKEDWEGAVRLVMTPRIGENEATHASKVHYLKNPTDIEGTLNKLPFFMHAEKSMMQVLLRGGANAHVDALKAVPKNLQLMYLHAFQSLLWNLAASERIELYGREGVVEGDLVFPRDSTVSIDSSVADPEAGPFDSEGSALLNHEGGADDDDEATESRDVEDQDAKRPRKTPARLPDVHMVTNEDVKKRTFRLTDVVLPMPG 978
            +GNFS+    L+LG L GN F +++R+V L G   P    E+V       G +         A   + E +V+          +   C  V   GFINYFGLQRFGTGGA T EVG A+L+ ++E A RLV+T R  E  A +A          D +G L +LP FM  E++++ VL     +    A++AVP+ +++MYLHA+QS +WN +AS RI  YGR+ VV GDLV PR    +              S G+  L   GG DD  E  E+ D  +  A        RL  V +VT+ DV+   + + DVVLP+PG
Sbjct:  462 VGNFSFCDDGLRLGCLLGNEFHLLMRDVRLVGSEPPAATAEAVTAEGEEMGTE--------GASGTKVEVDVIG--------QVTIACETVARSGFINYFGLQRFGTGGAATQEVGKALLRGEYERAARLVLTGRADER-ADYAEARKLFSEMGDAKGALRRLPHFMLGERAVLAVLATNPTD-WAGAMRAVPRTMRMMYLHAWQSYVWNSSASHRIRTYGRDRVVAGDLVLPRSGATA--------------SGGAESLELGGGVDDSGEGMEAEDGSEGSAGT---VSRRLALVRLVTDADVEAGRYDIFDVVLPLPG 746          
BLAST of mRNA_H-elongata_contig112058.977.1 vs. uniprot
Match: A0A8J4GCG3_9CHLO (TRUD domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GCG3_9CHLO)

HSP 1 Score: 173 bits (439), Expect = 9.000e-45
Identity = 122/320 (38.12%), Postives = 168/320 (52.50%), Query Frame = 1
Query:   19 LGNFSYVGQPLKLGNLSGNRFGIVLRNVNLPGFPAPGGEGESVNRAQSGPGDQAAGSPEAVNAEAARTEAEVVAAAGARLKKTIDHRCARVKERGFINYFGLQRFGTGGAPTSEVGLAMLKEDWEGAVRLVMTPRIGENEATHASKVHYLKNPTDIEGTLNKLPFFMHAEKSMMQVLLRGGANAHVDALKAVPKNLQLMYLHAFQSLLWNLAASERIELYGREGVVEGDLVFPRDSTVSIDSSVADPEAGPFDSEGSALLNHEGGADDDDEATESRDVEDQDAKRPRKTPARLPDVHMVTNEDVKKRTFRLTDVVLPMPG 978
            +GNFS+  + L+LG LSGN F +++R+V L   P P           +   D     P+  +    + +++VVA         +   C  V   GFINYFGLQRFGTGGA T EVG A+L+ ++E A RLV+T R  E      ++  +  N  D +G L +LP FM  E++++ VL    A+    A+KAVP+ +++MYLHA+QS +WN AAS RI  YGR+GVV GDLV PR S  +               EG  LL   GG DD  E  E  D  +  A        RL    + T  DV+   + + DVVLP+PG
Sbjct:  447 VGNFSFCDEGLRLGCLSGNEFHLLMRDVRLAS-PEPPAVAXXXXXXTAITADGEEAGPKGTSG--TKIDSDVVA--------QVTAACETVARNGFINYFGLQRFGTGGAATQEVGKALLRGEYEKAARLVLTGRADERSDYADARRLFFDNG-DAKGALRRLPHFMLGERAVLSVLATDPAD-WAGAMKAVPRTMRMMYLHAWQSYVWNSAASHRIRTYGRDGVVAGDLVLPRSSATAAGG------------EGLMLL---GGVDDSGEGMEPEDESEGSAGT---VTRRLALARLATEADVEAGRYNIFDVVLPLPG 735          
BLAST of mRNA_H-elongata_contig112058.977.1 vs. uniprot
Match: A0A834SK78_9FABA (Multisubstrate pseudouridine synthase 7 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834SK78_9FABA)

HSP 1 Score: 156 bits (395), Expect = 2.960e-39
Identity = 92/227 (40.53%), Postives = 136/227 (59.91%), Query Frame = 1
Query:  301 GFINYFGLQRFGTGGAPTSEVGLAMLKEDWEGAVRLVMTPRIGENEATHASKVHYLKNPTDIEGTLNKLPFFMHAEKSMMQVLLRGGANAHVDALKAVPKNLQLMYLHAFQSLLWNLAASERIELYGREGVVEGDLVFPRDSTVSIDSSVADPE-AGPFDSEGSALLNHEGGADDDDEATESRDVEDQDAKRPRKTPARLPDVHMVTNEDVKKRTFRLTDVVLPMPG 978
            GFINYFGLQRFG+G  PT  +G A+L+ +W+ AV +++ PR GE +A   ++ +Y KN  D+EGTL +LP  + AE++++Q L +   N ++ ALKA+P+ L++MY+H++QS LWN AAS R++ YG E VV GDLV+ +D+ V  D+   D E     D    + LN E  AD         DV ++              V  VT +D+    + + DV+LPMPG
Sbjct:  306 GFINYFGLQRFGSGSVPTHLIGAALLRGEWKLAVDMILDPRTGERDAITKAREYY-KNSNDVEGTLKQLPRHLVAERAVLQCLKKSPEN-YLQALKAIPRTLRMMYVHSYQSYLWNHAASLRVQKYGTEQVVLGDLVYCKDNPVGKDTGFVDNELTNGCDDRYDSSLNEEEFAD--------MDVREESNSH----------VKAVTADDLNSGYYTIEDVILPMPG 512          
BLAST of mRNA_H-elongata_contig112058.977.1 vs. uniprot
Match: A0A2P6TL97_CHLSO (Multisubstrate pseudouridine synthase 7-like n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TL97_CHLSO)

HSP 1 Score: 156 bits (394), Expect = 5.770e-39
Identity = 94/235 (40.00%), Postives = 130/235 (55.32%), Query Frame = 1
Query:   19 LGNFSYVGQPLKLGNLSGNRFGIVLRNVNLPGFPAPGGEGESVNRAQSGPGDQAAGSPEAVNAEAARTEAEVVAAAGARLKKTIDHRCARVKERGFINYFGLQRFGTGGAPTSEVGLAMLKEDWEGAVRLVMTPRIGENEATHASKVHYLKNPTDIEGTLNKLPFFMHAEKSMMQVLLRGGANAHVDALKAVPKNLQLMYLHAFQSLLWNLAASERIELYGREGVVEGDLVFPRD 723
            LGNF +V + L+LG+L GNRF +VLRN+                        QA+ +  A  AEAA      VAAA   L+++           GFINY+GLQRFG+G  PT  +G ++L+  W  AVR ++TPR                   DIEG L ++P F+ AE  ++QVL R G N ++ A+ A+P+NL+ +Y+HA+QS LWN AAS R+E +G E VV GDLV  +D
Sbjct:  313 LGNFEFVSEQLRLGDLRGNRFELVLRNI------------------------QASSAGSAAEAEAA------VAAAAEGLRRS-----------GFINYYGLQRFGSGAVPTHRIGQSLLRGQWREAVRQLLTPRPDCTREDQVEAARLYLEEGDIEGALARMPRFLVAEPMLLQVLKRQGPNDYLSAVMALPRNLRTIYIHAYQSYLWNAAASHRVETFGAERVVAGDLVLLQD 506          
BLAST of mRNA_H-elongata_contig112058.977.1 vs. uniprot
Match: L1J8P3_GUITC (TRUD domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J8P3_GUITC)

HSP 1 Score: 154 bits (390), Expect = 9.590e-39
Identity = 111/322 (34.47%), Postives = 163/322 (50.62%), Query Frame = 1
Query:   19 LGNFSYVGQPLKLGNLSGNRFGIVLRNVNLPGFPAPGGEGESVNRAQSGPGDQAAGSPEAVNAEAARTEAEVVAAAGARLKKTIDHRCARVKERGFINYFGLQRFGTGGAPTSEVGLAMLKEDWEGAVRLVMTPRIGENEATHASKVHYLKNPTDIEGTLNKLPFFMHAEKSMMQVLLRGGANAHVDALKAVPKNLQLMYLHAFQSLLWNLAASERIELYGREGVVEGDLVFPRDSTVSIDSSVADPEAGPFDSEGSALLNHEGGADDDDEATES--RDVEDQDAKRPRKTPARLPDVHMVTNEDVKKRTFRLTDVVLPMPG 978
            +GN S   Q LKLG L GNRF I+LR+V                         + GS EA+                          C  +KE+GFINYFG QRFGT   PT  +G  +L EDWE A  L++ PR GE E +  ++  + K   D    L + P +M AE++++ V  + G N+H++AL+A+P+NL+LMY+H++QS +WN   SER+ +YG++  VEGDLV        ++S   + E+  FD EG             DE+T S     E+Q++   + T +    V ++   DV K  + + DVVLP+PG
Sbjct:  245 IGNLSVCEQTLKLGQLYGNRFQIILRDVQA-----------------------SEGSIEAL--------------------------CNSLKEKGFINYFGKQRFGTSSIPTYSIGREILHEDWEKAADLILCPRDGEKEESKTAREKF-KEHKDPAKALEEFPRWMFAERTLLDVYKKRGMNSHLNALQALPRNLRLMYIHSYQSYIWNKMVSERLRMYGKDRPVEGDLV--------LESKDVESES-LFDLEGV------------DESTLSGANASEEQESDHDKWTKSHPKKVKVLAASDVDK--YSIFDVVLPLPG 493          
BLAST of mRNA_H-elongata_contig112058.977.1 vs. uniprot
Match: UPI001CB9CF69 (multisubstrate pseudouridine synthase 7 isoform X1 n=2 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9CF69)

HSP 1 Score: 155 bits (392), Expect = 1.040e-38
Identity = 92/232 (39.66%), Postives = 135/232 (58.19%), Query Frame = 1
Query:  295 ERGFINYFGLQRFGTGGAPTSEVGLAMLKEDWEGAVRLVMTPRIGENEATHASKVHYLKNPTDIEGTLNKLPFFMHAEKSMMQVLLRGGANAHVDALKAVPKNLQLMYLHAFQSLLWNLAASERIELYGREGVVEGDLVFPRDSTVS----IDSSVADPEAGPFDSEGSALLNHEGGADDDDEATESRDVEDQDAKRPRKTPARLPDVHMVTNEDVKKRTFRLTDVVLPMPG 978
            + GFINYFG+QRFG+G  PT  +G  +LK +WE AVR+++ PR GE +   + + +Y K   DI+GTL +LP F+ AEK+++Q L +   N ++ ALKAVP+ L++MY+H++QS LWN AAS R++ YG + VV GDLV+  +   +    ID SV + E GP                      ES + +  D      +      V +V NED+    + +TDVVLP+PG
Sbjct:  376 KHGFINYFGMQRFGSGSIPTHLIGAKLLKGEWEEAVRMILDPRDGERDDIRSIREYY-KESEDIDGTLRQLPRFLVAEKAILQCLKKCPGN-YLQALKAVPRTLRMMYVHSYQSYLWNHAASMRVQKYGTDHVVLGDLVYCNEENSNEIKQIDDSVYE-EIGP---------------------NESSENDHLDESETHVSEGNCTSVKVVNNEDIASGHYTVTDVVLPLPG 583          
BLAST of mRNA_H-elongata_contig112058.977.1 vs. uniprot
Match: A0A7S1SQ98_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SQ98_9CHLO)

HSP 1 Score: 144 bits (362), Expect = 1.130e-38
Identity = 77/141 (54.61%), Postives = 97/141 (68.79%), Query Frame = 1
Query:  289 VKERGFINYFGLQRFGTGGAPTSEVGLAMLKEDWEGAVRLVMTPRIGENEATHASKVHYLKNPTDIEGTLNKLPFFMHAEKSMMQVLLRGGANAHVDALKAVPKNLQLMYLHAFQSLLWNLAASERIELYGREGVVEGDLV 711
            + +RGF+NYFGLQRFG GGA T EVG+ +LK  WE AVR +M PR  E   + A K  YL+   DI+G L  LP FM  E+SM++ L R   +  V AL  +P+N++ MYLH++QSLLWNLAASERI L+G E  V GDLV
Sbjct:   26 IAQRGFVNYFGLQRFGQGGAGTHEVGVLLLKGHWEAAVRAIMAPRSDERVDSLAVKKAYLEQG-DIKGALAALPRFMAVERSMLEALGRNPKD-FVGALGCIPRNMRTMYLHSYQSLLWNLAASERIALFGAEAPVAGDLV 164          
BLAST of mRNA_H-elongata_contig112058.977.1 vs. uniprot
Match: A0A2P6V0Y5_9CHLO (Multisubstrate pseudouridine synthase 7 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0Y5_9CHLO)

HSP 1 Score: 154 bits (388), Expect = 4.160e-38
Identity = 90/233 (38.63%), Postives = 127/233 (54.51%), Query Frame = 1
Query:  289 VKERGFINYFGLQRFGTGGAPTSEVGLAMLKEDWEGAVRLVMTPRIGENEATHASKVHYLKNPTDIEGTLNKLPFFMHAEKSMMQVLLRGGANAHVDALKAVPKNLQLMYLHAFQSLLWNLAASERIELYGREGVVEGDLVFPRDSTVSIDSSVADPEAGPF---DSEGSALLNHEGGADDDDEATESRDVEDQDAKRPRKTPARLPDVHMVTNEDVKKRTFRLTDVVLPMPG 978
            +++ GF+NY+GLQRFGTGG PT  VG A+L+  W  AVR+++TPR   + A  A          DIEG L ++P F+ AE  ++Q L + G + +++AL  +P+NL+ MY+HA+QS LWN AAS RI  YG    V+GDLV  +    +   + A     P    D+EG A    EG         E RD             A   +VH+VT  +    T+ + DVVLP+PG
Sbjct:  312 LRDTGFVNYYGLQRFGTGGVPTHRVGAALLRGQWREAVRMLLTPRPDCSRADQAEACRLYLEEGDIEGALRRMPRFLVAEPLLLQALKQHGPSGYLNALSTLPRNLRTMYIHAYQSYLWNSAASHRIATYGAAAAVQGDLVLTQSGDAA--RAAARNRGRPRLQEDAEGEAAAGAEG---------EGRDAAXXXXXXXXXXXAAGEEVHVVTAAEAAAGTYSIDDVVLPLPG 533          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112058.977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KP90_9PHAE1.830e-12567.17TRUD domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A8J4CFZ8_9CHLO6.050e-4538.13TRUD domain-containing protein n=1 Tax=Volvox reti... [more]
A0A8J4AYV4_9CHLO6.700e-4537.19TRUD domain-containing protein n=1 Tax=Volvox afri... [more]
A0A8J4GCG3_9CHLO9.000e-4538.13TRUD domain-containing protein n=2 Tax=Volvox reti... [more]
A0A834SK78_9FABA2.960e-3940.53Multisubstrate pseudouridine synthase 7 n=1 Tax=Se... [more]
A0A2P6TL97_CHLSO5.770e-3940.00Multisubstrate pseudouridine synthase 7-like n=1 T... [more]
L1J8P3_GUITC9.590e-3934.47TRUD domain-containing protein n=1 Tax=Guillardia ... [more]
UPI001CB9CF691.040e-3839.66multisubstrate pseudouridine synthase 7 isoform X1... [more]
A0A7S1SQ98_9CHLO1.130e-3854.61Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A2P6V0Y5_9CHLO4.160e-3838.63Multisubstrate pseudouridine synthase 7 n=1 Tax=Mi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112058contigH-elongata_contig112058:176..1966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score395.2
Seed ortholog evalue3e-107
Seed eggNOG ortholog2880.D7G805
Preferred namePUS7
KEGG koko:K06176,ko:K08831
GOsGO:0000154,GO:0000455,GO:0001522,GO:0002682,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005732,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006417,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009890,GO:0009892,GO:0009982,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016556,GO:0016853,GO:0016866,GO:0017148,GO:0019222,GO:0019899,GO:0022613,GO:0031118,GO:0031119,GO:0031120,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031429,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034470,GO:0034641,GO:0034660,GO:0040031,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045595,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0072588,GO:0080090,GO:0090304,GO:1901360,GO:1901532,GO:1902036,GO:1902494,GO:1903706,GO:1990481,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000380,GO:2000736
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0585@1,KOG2339@2759
EC2.7.11.1,5.4.99.27
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03016,ko03041
Hectar predicted targeting categoryother localisation
Exons4
Model size981
Cds size981
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112058.977.1prot_H-elongata_contig112058.977.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112058 176..1966 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929642.4375095-CDS-H-elongata_contig112058:175..5361622929642.4375095-CDS-H-elongata_contig112058:175..536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112058 176..536 -
1691679102.7347753-CDS-H-elongata_contig112058:175..5361691679102.7347753-CDS-H-elongata_contig112058:175..536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112058 176..536 -
1622929642.45846-CDS-H-elongata_contig112058:863..10271622929642.45846-CDS-H-elongata_contig112058:863..1027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112058 864..1027 -
1691679102.7476704-CDS-H-elongata_contig112058:863..10271691679102.7476704-CDS-H-elongata_contig112058:863..1027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112058 864..1027 -
1622929642.4789157-CDS-H-elongata_contig112058:1432..16981622929642.4789157-CDS-H-elongata_contig112058:1432..1698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112058 1433..1698 -
1691679102.7554548-CDS-H-elongata_contig112058:1432..16981691679102.7554548-CDS-H-elongata_contig112058:1432..1698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112058 1433..1698 -
1622929642.5012975-CDS-H-elongata_contig112058:1776..19661622929642.5012975-CDS-H-elongata_contig112058:1776..1966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112058 1777..1966 -
1691679102.7634602-CDS-H-elongata_contig112058:1776..19661691679102.7634602-CDS-H-elongata_contig112058:1776..1966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112058 1777..1966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112058.977.1

>prot_H-elongata_contig112058.977.1 ID=prot_H-elongata_contig112058.977.1|Name=mRNA_H-elongata_contig112058.977.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=327bp
QGPIALLGNFSYVGQPLKLGNLSGNRFGIVLRNVNLPGFPAPGGEGESVN
RAQSGPGDQAAGSPEAVNAEAARTEAEVVAAAGARLKKTIDHRCARVKER
GFINYFGLQRFGTGGAPTSEVGLAMLKEDWEGAVRLVMTPRIGENEATHA
SKVHYLKNPTDIEGTLNKLPFFMHAEKSMMQVLLRGGANAHVDALKAVPK
NLQLMYLHAFQSLLWNLAASERIELYGREGVVEGDLVFPRDSTVSIDSSV
ADPEAGPFDSEGSALLNHEGGADDDDEATESRDVEDQDAKRPRKTPARLP
DVHMVTNEDVKKRTFRLTDVVLPMPG*
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mRNA from alignment at H-elongata_contig112058:176..1966-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112058.977.1 ID=mRNA_H-elongata_contig112058.977.1|Name=mRNA_H-elongata_contig112058.977.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1791bp|location=Sequence derived from alignment at H-elongata_contig112058:176..1966- (Himanthalia elongata Himel1 dioecious)
CAGGGCCCCATCGCGCTTTTGGGCAACTTCTCCTACGTCGGACAGCCCCT CAAGCTCGGAAATCTTTCAGGCAACCGCTTCGGCATCGTCCTCAGGAACG TCAATCTCCCTGGATTTCCTGCTCCCGGAGGCGAAGGAGAAAGCGTGAAC CGTGCACAGAGCGGTCCTGGCGATCAAGCTGCCGGTAGCCGTGCGGCCCC CGACGATCAAGTCGCGATCGGCGAGGATAACGGGATGAGTGATAACGTGG GCGACGCCGATGCGGAAGCTGAAGCGGTGAACGCGGAAGCGGCAAGGACG GAAGCCGAAGTGGTAGCGGCAGCAGGAGCCAGGCTGAAGAAAACGATCGA CCACCGGTGTGCTCGCGTGAAAGAGCGGGGCTTCATCAACTACTTCGGGC TCCAGCGCTTCGGAACAGGCGGGGCGCCCACAAGCGAGGTGGGGCTGGCG ATGCTCAAGGAGGACTGGGAGGGGGCTGTGAGGCTGGTGATGACACCCAG GATCGGCGAGAACGAAGCAACCCATGCGAGCAAGGTGGGGATGTTTCTGG GCTGATATTGCTCTTGGCCTTAGTAAACCAACGTCAGAGCGAGGTGTTTG CGGGGGGGGTTGGCGCGAGGGCAATTACTACGTCGCAAGGCAATTCGGCC GGGAAGCGTAAATTCTTATTCCTAGCCTTAGGATTGAGATGGAACTGCTT TATGTGCAGCGCGGGTGTTGATTCGTGGTGTCCACCATCTGGACACTTTC ACACTTACTGCCATCACGTATGGTGGGCGCAAAGTGTGCAGGAACTGGAG CCGCCTCGAGCTGATTCGCCGCAAGCGCAAGTCATCCGCACGGTACGATC GCTGTGACCTGGGTATCCACACCGTTTGCACGAGCGTCGATTTTTGATCC GTCGCCGTCGCGACGCATAACCAACATCCACCCTCGAAGGTGCACTACCT CAAGAACCCGACAGATATCGAAGGCACTTTGAACAAGCTCCCGTTCTTCA TGCACGCGGAAAAAAGCATGATGCAGGTTCTGCTCAGAGGAGGCGCAAAC GCCCACGTGGATGCCCTCAAGGCCGTGCCCAAGAACCTTCAGCTTATGTA CCTGTAAGTGGGCATTTGATGTAATTTTGTACCGATTCTGAAGGTATTAC CAGCAATGGGTTCAATTTAGCATATTAGTGTTGCCACCTCCAATATTTCC TTACACGGTGTTGGTATTCACATCTTCACATGTGCTGTCTGCCTCACATA CATAATCGATGATGGCTTCCATATAAAACCAATCGTTGCTTGCGCCGTGA CAGGAACTCGAACGCCCAAAGACCAACCAGGCATGGTGACGTGCTCGCGC GCAATGAAGCGAATCACGCGGGCAGTGTGTTTGCGCCGCCCTCATTATCT CCTGCATCCGTCGTGTTACGCCCTCCCCAGACACGCCTTCCAATCTCTCC TTTGGAACCTTGCAGCCTCGGAGCGCATCGAGCTCTACGGAAGAGAAGGT GTCGTCGAAGGCGATCTCGTTTTCCCTAGAGATTCGACTGTGAGCATCGA CTCTTCTGTTGCAGACCCAGAGGCTGGTCCCTTCGACTCAGAGGGAAGTG CACTTTTGAACCACGAAGGCGGCGCAGACGATGATGACGAAGCGACAGAG AGCAGGGATGTCGAAGACCAGGATGCCAAGCGGCCCAGGAAGACGCCGGC GCGCCTGCCTGATGTGCATATGGTGACGAACGAGGACGTAAAGAAGAGAA CCTTCCGGCTGACTGATGTGGTGCTACCCATGCCCGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig112058:176..1966-

>mRNA_H-elongata_contig112058.977.1 ID=mRNA_H-elongata_contig112058.977.1|Name=mRNA_H-elongata_contig112058.977.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1962bp|location=Sequence derived from alignment at H-elongata_contig112058:176..1966- (Himanthalia elongata Himel1 dioecious)
CAGGGCCCCATCGCGCTTTTGGGCAACTTCTCCTACGTCGGACAGCCCCT
CAAGCTCGGAAATCTTTCAGGCAACCGCTTCGGCATCGTCCTCAGGAACG
TCAATCTCCCTGGATTTCCTGCTCCCGGAGGCGAAGGAGAAAGCGTGAAC
CGTGCACAGAGCGGTCCTGGCGATCAAGCTGCCGGTAGCCCAGGGCCCCA
TCGCGCTTTTGGGCAACTTCTCCTACGTCGGACAGCCCCTCAAGCTCGGA
AATCTTTCAGGCAACCGCTTCGGCATCGTCCTCAGGAACGTCAATCTCCC
TGGATTTCCTGCTCCCGGAGGCGAAGGAGAAAGCGTGAACCGTGCACAGA
GCGGTCCTGGCGATCAAGCTGCCGGTAGCCCTGAAGCGGTGAACGCGGAA
GCGGCAAGGACGGAAGCCGAAGTGGTAGCGGCAGCAGGAGCCAGGCTGAA
GAAAACGATCGACCACCGGTGTGCTCGCGTGAAAGAGCGGGGCTTCATCA
ACTACTTCGGGCTCCAGCGCTTCGGAACAGGCGGGGCGCCCACAAGCGAG
GTGGGGCTGGCGATGCTCAAGGAGGACTGGGAGGGGGCTGTGAGGCTGGT
GATGACACCCAGGATCGGCGAGAACGAAGCAACCCATGCGAGCAAGCTGA
AGCGGTGAACGCGGAAGCGGCAAGGACGGAAGCCGAAGTGGTAGCGGCAG
CAGGAGCCAGGCTGAAGAAAACGATCGACCACCGGTGTGCTCGCGTGAAA
GAGCGGGGCTTCATCAACTACTTCGGGCTCCAGCGCTTCGGAACAGGCGG
GGCGCCCACAAGCGAGGTGGGGCTGGCGATGCTCAAGGAGGACTGGGAGG
GGGCTGTGAGGCTGGTGATGACACCCAGGATCGGCGAGAACGAAGCAACC
CATGCGAGCAAGGTGCACTACCTCAAGAACCCGACAGATATCGAAGGCAC
TTTGAACAAGCTCCCGTTCTTCATGCACGCGGAAAAAAGCATGATGCAGG
TTCTGCTCAGAGGAGGCGCAAACGCCCACGTGGATGCCCTCAAGGCCGTG
CCCAAGAACCTTCAGCTTATGTACCTGTGCACTACCTCAAGAACCCGACA
GATATCGAAGGCACTTTGAACAAGCTCCCGTTCTTCATGCACGCGGAAAA
AAGCATGATGCAGGTTCTGCTCAGAGGAGGCGCAAACGCCCACGTGGATG
CCCTCAAGGCCGTGCCCAAGAACCTTCAGCTTATGTACCTACACGCCTTC
CAATCTCTCCTTTGGAACCTTGCAGCCTCGGAGCGCATCGAGCTCTACGG
AAGAGAAGGTGTCGTCGAAGGCGATCTCGTTTTCCCTAGAGATTCGACTG
TGAGCATCGACTCTTCTGTTGCAGACCCAGAGGCTGGTCCCTTCGACTCA
GAGGGAAGTGCACTTTTGAACCACGAAGGCGGCGCAGACGATGATGACGA
AGCGACAGAGAGCAGGGATGTCGAAGACCAGGATGCCAAGCGGCCCAGGA
AGACGCCGGCGCGCCTGCCTGATGTGCATATGGTGACGAACGAGGACGTA
AAGAAGAGAACCTTCCGGCTGACTGATGTGGTGCTACCCATGCCCGGGTG
AACACGCCTTCCAATCTCTCCTTTGGAACCTTGCAGCCTCGGAGCGCATC
GAGCTCTACGGAAGAGAAGGTGTCGTCGAAGGCGATCTCGTTTTCCCTAG
AGATTCGACTGTGAGCATCGACTCTTCTGTTGCAGACCCAGAGGCTGGTC
CCTTCGACTCAGAGGGAAGTGCACTTTTGAACCACGAAGGCGGCGCAGAC
GATGATGACGAAGCGACAGAGAGCAGGGATGTCGAAGACCAGGATGCCAA
GCGGCCCAGGAAGACGCCGGCGCGCCTGCCTGATGTGCATATGGTGACGA
ACGAGGACGTAAAGAAGAGAACCTTCCGGCTGACTGATGTGGTGCTACCC
ATGCCCGGGTGA
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