mRNA_H-elongata_contig11195.974.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11195.974.1
Unique NamemRNA_H-elongata_contig11195.974.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11195.974.1 vs. uniprot
Match: D8LSH1_ECTSI (Serine/threonine protein kinase, possibly NIMA-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH1_ECTSI)

HSP 1 Score: 400 bits (1028), Expect = 2.230e-131
Identity = 193/224 (86.16%), Postives = 204/224 (91.07%), Query Frame = 1
Query:    7 QIIKLKNIPNKEQVACRNEVELLRRMCHPNIVGYTNSLIYKNCLCIIMEYCDAGDLGDRVNEAKASEIDNLFPESEVMTWFVQITLGLHYMHTNRVLHRDIKTQNVFILSSGRVVLGDLGISKLLGSTHDFASTCIGTPYYMSPEIFKNQPYNDKSDVWALGCLLYELLTLKHAFDAQSLNSLAGKIIKGRFPPVSTQYSRNLRALVNDMLAINPRKRPDTEQV 678
            ++IKLKNIP KEQ AC+NEVELL RMCHPNIVGYTNS +YKNCLCIIMEYCDAGDLGDRVNEAK      L PES+VMTWFVQ  LGLH+MH+NRVLHRDIKTQNVFILSSGRVVLGDLGISKLLG T DFASTCIGTPYYMSPEIFKN PYNDKSDVWALGCLLYELLTLKHAFDAQSLN LAGKIIKG+FP VSTQYS+NLRALVNDMLA NP+KRPD EQ+
Sbjct:   33 KVIKLKNIPPKEQEACKNEVELLSRMCHPNIVGYTNSFLYKNCLCIIMEYCDAGDLGDRVNEAKGQ----LLPESKVMTWFVQTALGLHFMHSNRVLHRDIKTQNVFILSSGRVVLGDLGISKLLGGTRDFASTCIGTPYYMSPEIFKNHPYNDKSDVWALGCLLYELLTLKHAFDAQSLNGLAGKIIKGKFPSVSTQYSKNLRALVNDMLATNPKKRPDIEQI 252          
BLAST of mRNA_H-elongata_contig11195.974.1 vs. uniprot
Match: A0A835ZAS8_9STRA (NEK1 protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAS8_9STRA)

HSP 1 Score: 345 bits (886), Expect = 2.790e-116
Identity = 162/224 (72.32%), Postives = 190/224 (84.82%), Query Frame = 1
Query:    7 QIIKLKNIPNKEQVACRNEVELLRRMCHPNIVGYTNSLIYKNCLCIIMEYCDAGDLGDRVNEAKASEIDNLFPESEVMTWFVQITLGLHYMHTNRVLHRDIKTQNVFILSSGRVVLGDLGISKLLGSTHDFASTCIGTPYYMSPEIFKNQPYNDKSDVWALGCLLYELLTLKHAFDAQSLNSLAGKIIKGRFPPVSTQYSRNLRALVNDMLAINPRKRPDTEQV 678
            ++IKLKN+P KEQ ACR+EVELL+RM HPNIVGY +S +YKNCLCIIME+CDAGDLG+RV +A       LFPE+++MTWFVQI LGLH+MH NRVLHRDIKTQN+FILSSGRVVLGDLGISK++G T DFAST IGTPYYMSPEIF+N+PYN KSDVWALG +LYEL TLKHAFDAQ + SL+ KIIKG++PPV   YS N + LV D+LAI+P  RPD EQ+
Sbjct:   33 KVIKLKNMPKKEQEACRSEVELLKRMIHPNIVGYMDSFLYKNCLCIIMEFCDAGDLGERVTKATQQNPVALFPETKIMTWFVQIALGLHFMHKNRVLHRDIKTQNIFILSSGRVVLGDLGISKVMGGTTDFASTQIGTPYYMSPEIFQNKPYNHKSDVWALGIVLYELATLKHAFDAQCITSLSSKIIKGKYPPVDAGYSNNFKGLVKDLLAISPGARPDVEQI 256          
BLAST of mRNA_H-elongata_contig11195.974.1 vs. uniprot
Match: A0A7S1UB12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UB12_9STRA)

HSP 1 Score: 315 bits (807), Expect = 2.420e-104
Identity = 149/229 (65.07%), Postives = 183/229 (79.91%), Query Frame = 1
Query:    7 QIIKLKNIPNKEQVACRNEVELLRRMCHPNIVGYTNSLIYKN--CLCIIMEYCDAGDLGDRVNEAKASEIDNLFPESEVMTWFVQITLGLHYMHTNRVLHRDIKTQNVFILSSGRVVLGDLGISKLLGSTHDFASTCIGTPYYMSPEIFKNQPYNDKSDVWALGCLLYELLTLKHAFDAQSLNSLAGKIIKGRFPPVSTQYSRNLRALVNDMLAINPRKRPDTEQVWGL 687
            ++IK+KNIP KE+ ACR EVELLRR+ HPNIVGY  S + +N   LCI+MEYCD GDL D + +A+      LFPES+V+ WFVQ+ LGLHYMH+NR+LHRD+KTQN+F+L +GR+VLGDLGISK+L  T DFA TCIGTPYYMSPEIFKN+PYN KSD+WALGC+LYEL TL HAFDA SLN LA KII+G++PP+  +YSRNLR L++ ML  +P  RPD E +  L
Sbjct:   33 KVIKVKNIPRKEREACRVEVELLRRLNHPNIVGYKESFLTRNKESLCIVMEYCDGGDLCDVIKKARRQ----LFPESKVLHWFVQMALGLHYMHSNRILHRDLKTQNIFLLGNGRLVLGDLGISKVLEGTMDFAQTCIGTPYYMSPEIFKNKPYNHKSDIWALGCVLYELTTLNHAFDAASLNGLASKIIRGKYPPIHPKYSRNLRNLIDSMLDKSPSARPDLEDILKL 257          
BLAST of mRNA_H-elongata_contig11195.974.1 vs. uniprot
Match: A0A836CGE2_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGE2_9STRA)

HSP 1 Score: 307 bits (786), Expect = 9.450e-100
Identity = 143/226 (63.27%), Postives = 184/226 (81.42%), Query Frame = 1
Query:    7 QIIKLKNIPNKEQVACRNEVELLRRMCHPNIVGYTNSLIY--KNCLCIIMEYCDAGDLGDRVNEAKASEIDNLFPESEVMTWFVQITLGLHYMHTNRVLHRDIKTQNVFILSSGRVVLGDLGISKLLGSTHDFASTCIGTPYYMSPEIFKNQPYNDKSDVWALGCLLYELLTLKHAFDAQSLNSLAGKIIKGRFPPVSTQYSRNLRALVNDMLAINPRKRPDTEQV 678
            ++IK+KNIP KE+ ACR EVELL+R+ HPNIVGY  S +   K+CLCI MEYCD GDL +++  A+      LF ES+++ +FVQ++LGLHYMH++R+LHRD+KTQNVF+L +GRVVLGDLGISK+L  T DFASTCIGTPYYMSPEIFKN+PYN KSDVWALGC+LYE+ TL HAFD+ SLN LA KI++G++PP++ +YS +LR L+  MLA +P  RPD +Q+
Sbjct:   33 KVIKIKNIPRKEREACRMEVELLKRLHHPNIVGYRESFLTPRKDCLCIAMEYCDGGDLCEQIKGARR----RLFSESKILHFFVQMSLGLHYMHSHRILHRDLKTQNVFLLGNGRVVLGDLGISKVLNGTMDFASTCIGTPYYMSPEIFKNEPYNHKSDVWALGCVLYEMTTLNHAFDSNSLNGLASKIVRGKYPPINPKYSPHLRDLIASMLATSPAARPDMDQI 254          
BLAST of mRNA_H-elongata_contig11195.974.1 vs. uniprot
Match: A0A7S2WHN0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WHN0_9STRA)

HSP 1 Score: 307 bits (787), Expect = 2.020e-98
Identity = 143/222 (64.41%), Postives = 180/222 (81.08%), Query Frame = 1
Query:    7 QIIKLKNIPNKEQVACRNEVELLRRMCHPNIVGYTNSLIYKN--CLCIIMEYCDAGDLGDRVNEAKASEIDNLFPESEVMTWFVQITLGLHYMHTNRVLHRDIKTQNVFILSSGRVVLGDLGISKLLGSTHDFASTCIGTPYYMSPEIFKNQPYNDKSDVWALGCLLYELLTLKHAFDAQSLNSLAGKIIKGRFPPVSTQYSRNLRALVNDMLAINPRKRPD 666
            +++++KN+P KE+ ACR EVELLRR+ HPNIVGY  S +++N   LCI+M+YCD GDL  ++  AK      LFPES+++ WFVQ+ LGL YMH NRVLHRD+KTQN+F+L +GR+VLGDLGISK+L  T DFA TCIGTPYYMSPEIFKN+PYN KSD+WALGC+LYE+ TL HAFDA SLN LA KIIKGRFPP++ +YS++LR L++ MLA +P  RPD
Sbjct:   62 KVVRIKNLPKKEREACRMEVELLRRLHHPNIVGYLGSFMHRNNESLCIVMQYCDGGDLCAQIKAAKKQ----LFPESKILHWFVQMALGLFYMHENRVLHRDLKTQNIFMLGNGRLVLGDLGISKVLEGTMDFAETCIGTPYYMSPEIFKNKPYNHKSDIWALGCVLYEMTTLNHAFDANSLNGLACKIIKGRFPPINPKYSKHLRDLISSMLATSPSSRPD 279          
BLAST of mRNA_H-elongata_contig11195.974.1 vs. uniprot
Match: A0A7S3HJZ2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJZ2_9STRA)

HSP 1 Score: 304 bits (779), Expect = 1.640e-93
Identity = 143/226 (63.27%), Postives = 182/226 (80.53%), Query Frame = 1
Query:    7 QIIKLKNIPNKEQVACRNEVELLRRMCHPNIVGYTNSLIYKN--CLCIIMEYCDAGDLGDRVNEAKASEIDNLFPESEVMTWFVQITLGLHYMHTNRVLHRDIKTQNVFILSSGRVVLGDLGISKLLGSTHDFASTCIGTPYYMSPEIFKNQPYNDKSDVWALGCLLYELLTLKHAFDAQSLNSLAGKIIKGRFPPVSTQYSRNLRALVNDMLAINPRKRPDTEQV 678
            +IIK+KNIP KE+ A + EV+LLRR+ HPNIV Y +S + KN   LCI MEYCD GDL  ++  A+     NLF ES+++ WFVQ+TLGLHYMH N+VLHRD+KTQNVF+L +GR+VLGDLGISK+L  T DFA TCIGTPYYMSPEIFKN+PY+ KSDVWALGC+LYE+ TL HAFDA SLN LA KI+KG++PP++ +YS++L  L+  ML +NP++RPD +Q+
Sbjct:   35 KIIKIKNIPKKEREATKVEVDLLRRLNHPNIVRYIDSFLSKNKESLCICMEYCDGGDLASQIKAARK----NLFSESKILHWFVQLTLGLHYMHGNKVLHRDLKTQNVFMLGNGRLVLGDLGISKVLDGTMDFAQTCIGTPYYMSPEIFKNKPYSYKSDVWALGCVLYEMTTLNHAFDANSLNGLATKIVKGKYPPINPKYSKHLSELIGQMLQLNPQQRPDLDQI 256          
BLAST of mRNA_H-elongata_contig11195.974.1 vs. uniprot
Match: A0A8J2SGK3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SGK3_9STRA)

HSP 1 Score: 297 bits (761), Expect = 5.040e-91
Identity = 139/226 (61.50%), Postives = 178/226 (78.76%), Query Frame = 1
Query:    7 QIIKLKNIPNKEQVACRNEVELLRRMCHPNIVGYTNSLIYKN--CLCIIMEYCDAGDLGDRVNEAKASEIDNLFPESEVMTWFVQITLGLHYMHTNRVLHRDIKTQNVFILSSGRVVLGDLGISKLLGSTHDFASTCIGTPYYMSPEIFKNQPYNDKSDVWALGCLLYELLTLKHAFDAQSLNSLAGKIIKGRFPPVSTQYSRNLRALVNDMLAINPRKRPDTEQV 678
            ++IK+KNIP KE+ ACR EV+L++R+ HPNIV Y +S + +N   LCI+M YCD GDLG+++ +A        F E++V+ WFVQ+ LGLHYMH NRVLHRD+KTQN+F+L +GR+VLGDLGISK+L  T DFA TCIGTPYYMSPEIFKN+PYN KSD+WALGC+LYE  TL HAFDA SLN LA KI++G++PPVS++YS++L  LV  MLA  P +RP  E +
Sbjct:   33 KVIKIKNIPKKEREACRAEVQLMKRLRHPNIVAYRDSFLARNRESLCIVMTYCDGGDLGNQITQAAKRR--RPFTEAKVLHWFVQMALGLHYMHANRVLHRDLKTQNIFLLGNGRLVLGDLGISKVLEGTLDFAQTCIGTPYYMSPEIFKNKPYNHKSDIWALGCVLYECATLNHAFDANSLNGLACKIVRGKYPPVSSRYSKHLSDLVGAMLATQPSQRPTLEAI 256          
BLAST of mRNA_H-elongata_contig11195.974.1 vs. uniprot
Match: D8LPU9_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPU9_ECTSI)

HSP 1 Score: 300 bits (767), Expect = 2.410e-90
Identity = 141/230 (61.30%), Postives = 181/230 (78.70%), Query Frame = 1
Query:    4 AQIIKLKNIPNKEQVACRNEVELLRRMCHPNIVGYTNSLIY--KNCLCIIMEYCDAGDLGDRVNEAKASEIDNLFPESEVMTWFVQITLGLHYMHTNRVLHRDIKTQNVFILSSGRVVLGDLGISKLLGSTHDFASTCIGTPYYMSPEIFKNQPYNDKSDVWALGCLLYELLTLKHAFDAQSLNSLAGKIIKGRFPPVSTQYSRNLRALVNDMLAINPRKRPDTEQVWGL 687
            A+IIK+KNIP KE+ ACR EV+L+RR+ HPNIVGY +S +   K+ LCI+MEYCD GDL  ++  A+      LFPES+++ WFVQI LGLHYMH+  VLHRD+KTQN+F+L +GR+VLGDLGISK+L  T DFAST IGTPYYMSPE+F N+PYN KSD+WALGC+LYE+  L HAFDA SL+ LA ++ KGR+P +  +YSRNLR L++ MLA +P +RPD +Q+  L
Sbjct:   32 AKIIKIKNIPRKEREACRTEVDLMRRLHHPNIVGYKDSFLTPRKDHLCIVMEYCDGGDLSTQIKNARK----RLFPESKILHWFVQIALGLHYMHSRLVLHRDLKTQNIFLLGNGRLVLGDLGISKVLEGTMDFASTRIGTPYYMSPELFNNKPYNHKSDIWALGCVLYEMSALSHAFDATSLHGLAQRVAKGRYPSIHVKYSRNLRDLISRMLATSPSQRPDLDQILQL 257          
BLAST of mRNA_H-elongata_contig11195.974.1 vs. uniprot
Match: A0A6H5K9D4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9D4_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 2.330e-87
Identity = 125/207 (60.39%), Postives = 161/207 (77.78%), Query Frame = 1
Query:   73 LRRMCHPNIVGYTNSLIY--KNCLCIIMEYCDAGDLGDRVNEAKASEIDNLFPESEVMTWFVQITLGLHYMHTNRVLHRDIKTQNVFILSSGRVVLGDLGISKLLGSTHDFASTCIGTPYYMSPEIFKNQPYNDKSDVWALGCLLYELLTLKHAFDAQSLNSLAGKIIKGRFPPVSTQYSRNLRALVNDMLAINPRKRPDTEQVWGL 687
            +RR+ HPNIVGY +S +   K+ LCI+MEYCD GDL  ++  A+      LFPES+++ WFVQI LGLHYMH+  VLHRD+KTQN+F+L +GR+VLGDLGISK+L  T DFAST IGTPYYMSPE+F N+PYN KSD+WALGC+LYE+  L HAFDA SL+ LA ++ KGR+P +  +YSRNLR L++ MLA +P +RPD +Q+  L
Sbjct:    1 MRRLHHPNIVGYKDSFLTPRKDHLCIVMEYCDGGDLSTQIKNARK----RLFPESKILHWFVQIALGLHYMHSRLVLHRDLKTQNIFLLGNGRLVLGDLGISKVLEGTMDFASTRIGTPYYMSPELFDNKPYNHKSDIWALGCVLYEMSALSHAFDATSLHGLAQRVAKGRYPSIHVKYSRNLRDLISRMLATSPSQRPDLDQILQL 203          
BLAST of mRNA_H-elongata_contig11195.974.1 vs. uniprot
Match: A0A5A8CUE2_CAFRO (Protein kinase domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CUE2_CAFRO)

HSP 1 Score: 261 bits (668), Expect = 3.430e-79
Identity = 118/226 (52.21%), Postives = 172/226 (76.11%), Query Frame = 1
Query:    7 QIIKLKNIPNKEQVACRNEVELLRRMCHPNIVGYTNSLIYK--NCLCIIMEYCDAGDLGDRVNEAKASEIDNLFPESEVMTWFVQITLGLHYMHTNRVLHRDIKTQNVFILSSGRVVLGDLGISKLLGSTHDFASTCIGTPYYMSPEIFKNQPYNDKSDVWALGCLLYELLTLKHAFDAQSLNSLAGKIIKGRFPPVSTQYSRNLRALVNDMLAINPRKRPDTEQV 678
            ++IK++ IP  E+ AC+NEV +++R+ HPNIV Y +S   +  + LCI+M YCD GDL  R+ + +      L PE +++ WFVQI LGL  MH+++VLHRD+KT N+F+LSSGR+VLGDLGISK L +T   AST IGTPYYMSPE+F+++PYN KSDVWA+GC+LYEL T++H F+A+S+  L  +I++GR+PP++ +YS+ LR+L++ +L+  P  RPD ++V
Sbjct:   33 KVIKMRGIPKAEREACKNEVAIMQRLPHPNIVAYKDSFSVQRGDKLCIVMTYCDGGDLSARLEQQRGK----LLPEDQILHWFVQIALGLGCMHSSKVLHRDLKTANIFLLSSGRLVLGDLGISKSLDATMAMASTQIGTPYYMSPELFQSKPYNHKSDVWAIGCVLYELCTMRHPFEAESIQQLGARILRGRYPPIAARYSKGLRSLIDSLLSQAPSSRPDVDEV 254          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11195.974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSH1_ECTSI2.230e-13186.16Serine/threonine protein kinase, possibly NIMA-lik... [more]
A0A835ZAS8_9STRA2.790e-11672.32NEK1 protein n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S1UB12_9STRA2.420e-10465.07Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A836CGE2_9STRA9.450e-10063.27Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S2WHN0_9STRA2.020e-9864.41Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3HJZ2_9STRA1.640e-9363.27Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A8J2SGK3_9STRA5.040e-9161.50Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
D8LPU9_ECTSI2.410e-9061.30Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
A0A6H5K9D4_9PHAE2.330e-8760.39Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A5A8CUE2_CAFRO3.430e-7952.21Protein kinase domain-containing protein n=4 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11195contigH-elongata_contig11195:2148..4400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score247.3
Seed ortholog evalue7.2e-63
Seed eggNOG ortholog5888.CAK81181
KEGG koko:K08282,ko:K08857,ko:K20876,ko:K20879
KEGG TC1.I.1.1.3
KEGG Pathwayko04621,map04621
EggNOG free text desc.Protein tyrosine kinase
EggNOG OGs3ZAMW@5878,KOG0589@1,KOG0589@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelCiliophora
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSerine/threonine protein kinase, possibly NIMA-like
Ec32 orthologEc-21_003680.1
Exons4
Model size705
Cds size705
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11195.974.1prot_H-elongata_contig11195.974.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11195 2148..4400 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929642.1068077-CDS-H-elongata_contig11195:2147..23571622929642.1068077-CDS-H-elongata_contig11195:2147..2357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11195 2148..2357 +
1691679102.5724702-CDS-H-elongata_contig11195:2147..23571691679102.5724702-CDS-H-elongata_contig11195:2147..2357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11195 2148..2357 +
1622929642.120711-CDS-H-elongata_contig11195:2902..30671622929642.120711-CDS-H-elongata_contig11195:2902..3067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11195 2903..3067 +
1691679102.5823538-CDS-H-elongata_contig11195:2902..30671691679102.5823538-CDS-H-elongata_contig11195:2902..3067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11195 2903..3067 +
1622929642.1355097-CDS-H-elongata_contig11195:3265..34321622929642.1355097-CDS-H-elongata_contig11195:3265..3432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11195 3266..3432 +
1691679102.5906267-CDS-H-elongata_contig11195:3265..34321691679102.5906267-CDS-H-elongata_contig11195:3265..3432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11195 3266..3432 +
1622929642.1502502-CDS-H-elongata_contig11195:4237..44001622929642.1502502-CDS-H-elongata_contig11195:4237..4400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11195 4238..4400 +
1691679102.6002855-CDS-H-elongata_contig11195:4237..44001691679102.6002855-CDS-H-elongata_contig11195:4237..4400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11195 4238..4400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11195.974.1

>prot_H-elongata_contig11195.974.1 ID=prot_H-elongata_contig11195.974.1|Name=mRNA_H-elongata_contig11195.974.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=235bp
HAQIIKLKNIPNKEQVACRNEVELLRRMCHPNIVGYTNSLIYKNCLCIIM
EYCDAGDLGDRVNEAKASEIDNLFPESEVMTWFVQITLGLHYMHTNRVLH
RDIKTQNVFILSSGRVVLGDLGISKLLGSTHDFASTCIGTPYYMSPEIFK
NQPYNDKSDVWALGCLLYELLTLKHAFDAQSLNSLAGKIIKGRFPPVSTQ
YSRNLRALVNDMLAINPRKRPDTEQVWGLRSLLQ*
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mRNA from alignment at H-elongata_contig11195:2148..4400+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11195.974.1 ID=mRNA_H-elongata_contig11195.974.1|Name=mRNA_H-elongata_contig11195.974.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2253bp|location=Sequence derived from alignment at H-elongata_contig11195:2148..4400+ (Himanthalia elongata Himel1 dioecious)
CACGCCCAGATTATCAAGCTGAAGAACATTCCGAACAAGGAACAGGTGGC CTGCCGCAACGAGGTTGAATTGCTGAGGCGCATGTGCCATCCCAACATCG TGGGATACACAAACTCTTTAATATATAAGAACTGCCTGTGCATTATCATG GAGTATTGCGACGCCGGCGACCTAGGCGATCGCGTCAACGAGGCGAAGGC AAGCGAGATAGTTTATATTTTTCAACGTGTTTACATCGAGCTCAGCACCT AGACGGTTTAGAAAGAGAGGAGGTATAATGAAATATATTTGTCTGAAAAT ACTATACTTTCCGTCGAATTGATGTTACTTTTTCGCTTCTATAGATGCAA TATTTGACAACGGGTAGTATATTATAAGGTACTCGTGCTGCCATGACGTG AAGGCGTGCTCGAAGATGGCGCTTTTCGCAGCATTCCGTAATTTAGTACT CAAAGGAAGTATAGTAGATGAGCCGCGCATGTAAATTCGCTTTATCGTGA ATATTCTGTCTCTCGTACGACCCCGAGCGCGACGCCTCTCTCCCGAGGCA TTATATGCTTGCATATACGTCACTCGTACTGCCACGTGAGGGTAAATACT TTTGCATGCTTTGCGTCGAGACAACTTTGACACTAGACCCTTTATTTCTC TCTCATCCTGCGCCGCTCCTTTTTTACATCGGCGTAACTTAAATCAATTT TATTTCCAAAATATAACATCTACATATGCGTGGGTGCGCGCACGCTCGGT GGCAGGACAATTTGTTCCCCGAAAGTGAGGTGATGACATGGTTTGTGCAG ATCACGCTTGGGCTACATTACATGCATACGAACCGGGTACTTCACCGTGA CATCAAGACCCAGAACGTGTTCATTTTAAGCAGCGGCAGGGTCGTCCTAG GTGACCTCGGCATATCAAAGGTGCGATCCAGTCTTGCTAAGTATAACAAG GTATGCTCGGCTGCATCTAATGGAAGCCTTAAGGGTTTGCGCCTAAGGTA TACCACACCCTTGGGCGCTTCATACCGAGCGACCCTCTCGAAAGCTTGAA TGAGCGATGTTCGCCGCCCTCATCACACACTTCTCGTCGCCTGTTGCTCG TTTCCTCCGATAAAACAGCTACTCGGGAGCACACACGATTTTGCGAGCAC ATGTATCGGTACGCCGTACTATATGTCTCCGGAGATATTTAAGAACCAGC CATACAACGACAAGTCTGACGTGTGGGCCCTCGGCTGCCTGCTGTACGAG CTACTCACGCTCAAGCATGCCTTTGACGCGCAGAGGTTTGACACAAAACA TGAAGTGAAAACAAAAATTAAGGGCAGGGTCGCAGCCGAGTCTTATACAA GGCTTACGCCACGCCTTAGCCGACACTTTTTCCAAATCATTAGCCAATCC GACGGCACTGCACAAATATATTAAATTTAGCGACCATATTCTTCCTCCAC CACCGCATCGTTCTAACGTACATCGACCGAGTGGCAACACCGTTTCCATG TCAAAGGTTTTACAGTAGTGGTGATACATTCGTTGCCCTCGTCAAGGTTG GATGGAATCCCAAGTGAGGTGGGGGGAAGGGGGACGGGATACAAAGGGAA ACTCCTTCATTTTTGCGAGCAATGCGCACCAAGCCTAATAGAGGTCGTTA CTTTGCTGACTGGGTGAATTCCAGCGAGGTAGTTTAACTCTCAGCAGCAA CACAAGATTCGTTTGTAGTATCTTAAAAGATATATACGTTCTTCGCGCAA GATGAAGAAAATCGGGAGAGATTTTTGTAGAGGGGTGCTCACAACTCTCC CGCAAACCTCACCAATGTGTGCCGCCGATGTCCAATGTCGGTGTAAGGTG GCGATATCACCACAGCTATCATATGAAGATTCTCCGAGTTCCCCCTTCCC CTGCCCGTCCTCGTGATTCGCGCACAAATCCCGAACATGATCCGTTTGTA GATGGTGTTCAAGTCATGGTTCTGTGTACATGTCCCGGTTGTCTAGAATA GGCTGGCTTCACTCACGTACACCTATTTCTTTTCATTTCTCTCTGACCCC CACCCCCTCTCTTTCTTCCTCATTTCACCCGTGTACTCAGTCTTAATAGC CTCGCAGGAAAGATTATCAAGGGTAGGTTTCCGCCAGTTTCTACCCAGTA CTCCAGAAACCTACGTGCGCTGGTCAACGACATGCTCGCCATTAACCCAA GAAAGCGGCCCGACACAGAGCAGGTATGGGGGCTACGAAGTTTGTTGCAG TAG
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Coding sequence (CDS) from alignment at H-elongata_contig11195:2148..4400+

>mRNA_H-elongata_contig11195.974.1 ID=mRNA_H-elongata_contig11195.974.1|Name=mRNA_H-elongata_contig11195.974.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1410bp|location=Sequence derived from alignment at H-elongata_contig11195:2148..4400+ (Himanthalia elongata Himel1 dioecious)
CACGCCCAGATTATCAAGCTGAAGAACATTCCGAACAAGGAACAGGTGGC
CTGCCGCAACGAGGTTGAATTGCTGAGGCGCATGTGCCATCCCAACATCG
TGGGATACACAAACTCTTTAATATATAAGAACTGCCTGTGCATTATCATG
GAGTATTGCGACGCCGGCGACCTAGGCGATCGCGTCAACGAGGCGAAGGC
AAGCGAGATACACGCCCAGATTATCAAGCTGAAGAACATTCCGAACAAGG
AACAGGTGGCCTGCCGCAACGAGGTTGAATTGCTGAGGCGCATGTGCCAT
CCCAACATCGTGGGATACACAAACTCTTTAATATATAAGAACTGCCTGTG
CATTATCATGGAGTATTGCGACGCCGGCGACCTAGGCGATCGCGTCAACG
AGGCGAAGGCAAGCGAGATAGACAATTTGTTCCCCGAAAGTGAGGTGATG
ACATGGTTTGTGCAGATCACGCTTGGGCTACATTACATGCATACGAACCG
GGTACTTCACCGTGACATCAAGACCCAGAACGTGTTCATTTTAAGCAGCG
GCAGGGTCGTCCTAGGTGACCTCGGCATATCAAAGGACAATTTGTTCCCC
GAAAGTGAGGTGATGACATGGTTTGTGCAGATCACGCTTGGGCTACATTA
CATGCATACGAACCGGGTACTTCACCGTGACATCAAGACCCAGAACGTGT
TCATTTTAAGCAGCGGCAGGGTCGTCCTAGGTGACCTCGGCATATCAAAG
CTACTCGGGAGCACACACGATTTTGCGAGCACATGTATCGGTACGCCGTA
CTATATGTCTCCGGAGATATTTAAGAACCAGCCATACAACGACAAGTCTG
ACGTGTGGGCCCTCGGCTGCCTGCTGTACGAGCTACTCACGCTCAAGCAT
GCCTTTGACGCGCAGAGCTACTCGGGAGCACACACGATTTTGCGAGCACA
TGTATCGGTACGCCGTACTATATGTCTCCGGAGATATTTAAGAACCAGCC
ATACAACGACAAGTCTGACGTGTGGGCCCTCGGCTGCCTGCTGTACGAGC
TACTCACGCTCAAGCATGCCTTTGACGCGCAGAGTCTTAATAGCCTCGCA
GGAAAGATTATCAAGGGTAGGTTTCCGCCAGTTTCTACCCAGTACTCCAG
AAACCTACGTGCGCTGGTCAACGACATGCTCGCCATTAACCCAAGAAAGC
GGCCCGACACAGAGCAGGTATGGGGGCTACGAAGTTTGTTGCAGTAGTCT
TAATAGCCTCGCAGGAAAGATTATCAAGGGTAGGTTTCCGCCAGTTTCTA
CCCAGTACTCCAGAAACCTACGTGCGCTGGTCAACGACATGCTCGCCATT
AACCCAAGAAAGCGGCCCGACACAGAGCAGGTATGGGGGCTACGAAGTTT
GTTGCAGTAG
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