mRNA_H-elongata_contig11183.964.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11183.964.1
Unique NamemRNA_H-elongata_contig11183.964.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11183.964.1 vs. uniprot
Match: A0A6H5L472_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L472_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.880e-30
Identity = 59/94 (62.77%), Postives = 74/94 (78.72%), Query Frame = 2 
Query:   65 LKTMFADMRKGRVSWAILPLVVRAREAGIPLSTGVYNAAIAAYMSSPNKYADALKVLQWLKDSGDPYVRPDGKSYNIVMRVYSEAGKWRMVYEV 346
            +KT F ++R+GRV WA+LPLV++A++AGIPLSTGVYNAAIAAY  +P KY DAL+VL  L+   DP VRPD  SYN  M V SEAG+WR+V E+
Sbjct:  257 IKTRFRNIREGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYAGTPRKYEDALRVLNMLRREEDPGVRPDLGSYNAAMWVCSEAGQWRLVMEL 350
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BLAST of mRNA_H-elongata_contig11183.964.1 vs. uniprot
Match: D7FLV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV0_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 2.270e-30
Identity = 59/94 (62.77%), Postives = 74/94 (78.72%), Query Frame = 2 
Query:   65 LKTMFADMRKGRVSWAILPLVVRAREAGIPLSTGVYNAAIAAYMSSPNKYADALKVLQWLKDSGDPYVRPDGKSYNIVMRVYSEAGKWRMVYEV 346
            +KT F ++R+GRV WA+LPLV++A++AGIPLSTGVYNAAIAAY  +P KY DAL+VL  L+   DP VRPD  SYN  M V SEAG+WR+V E+
Sbjct:  207 MKTRFRNIREGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYSGTPRKYEDALRVLNMLRREEDPGVRPDLGSYNAAMWVCSEAGQWRLVMEL 300
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11183.964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L472_9PHAE1.880e-3062.77Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FLV0_ECTSI2.270e-3062.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11183contigH-elongata_contig11183:2660..3037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue5.3e-25
Seed eggNOG ortholog2880.D7FLV0
KEGG koko:K17710
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016,ko03029
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-26_001150.1
Exons1
Model size378
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11183.964.1prot_H-elongata_contig11183.964.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11183 2733..3014 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929641.439451-UTR-H-elongata_contig11183:2659..27321622929641.439451-UTR-H-elongata_contig11183:2659..2732Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11183 2660..2732 +
1691679102.2971628-UTR-H-elongata_contig11183:2659..27321691679102.2971628-UTR-H-elongata_contig11183:2659..2732Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11183 2660..2732 +
1622929641.4725869-UTR-H-elongata_contig11183:3014..30371622929641.4725869-UTR-H-elongata_contig11183:3014..3037Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11183 3015..3037 +
1691679102.3252134-UTR-H-elongata_contig11183:3014..30371691679102.3252134-UTR-H-elongata_contig11183:3014..3037Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11183 3015..3037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929641.458206-CDS-H-elongata_contig11183:2732..30141622929641.458206-CDS-H-elongata_contig11183:2732..3014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11183 2733..3014 +
1691679102.3153644-CDS-H-elongata_contig11183:2732..30141691679102.3153644-CDS-H-elongata_contig11183:2732..3014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11183 2733..3014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11183.964.1

>prot_H-elongata_contig11183.964.1 ID=prot_H-elongata_contig11183.964.1|Name=mRNA_H-elongata_contig11183.964.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MFADMRKGRVSWAILPLVVRAREAGIPLSTGVYNAAIAAYMSSPNKYADA
LKVLQWLKDSGDPYVRPDGKSYNIVMRVYSEAGKWRMVYEVGG*
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mRNA from alignment at H-elongata_contig11183:2660..3037+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11183.964.1 ID=mRNA_H-elongata_contig11183.964.1|Name=mRNA_H-elongata_contig11183.964.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=378bp|location=Sequence derived from alignment at H-elongata_contig11183:2660..3037+ (Himanthalia elongata Himel1 dioecious)
ATTGGGGAGAAACGTTGCGGGATCATTGGTATCGATACCGCTCAATACCT
ACAAGTACGAAAAATTAAAGACAATGTTCGCTGATATGCGCAAAGGAAGG
GTGAGCTGGGCCATTCTGCCACTGGTTGTACGTGCTCGCGAAGCCGGCAT
ACCGTTGAGCACCGGGGTGTACAATGCGGCGATCGCGGCGTACATGAGCT
CACCGAACAAGTACGCCGACGCCTTGAAAGTTCTACAGTGGTTGAAGGAT
TCTGGGGATCCATACGTTAGACCAGACGGTAAGTCCTACAACATTGTCAT
GCGTGTCTATAGCGAGGCTGGCAAATGGAGGATGGTGTACGAGGTGGGTG
GGTAGAGCGAGATATGATCGCACACGAC
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Coding sequence (CDS) from alignment at H-elongata_contig11183:2660..3037+

>mRNA_H-elongata_contig11183.964.1 ID=mRNA_H-elongata_contig11183.964.1|Name=mRNA_H-elongata_contig11183.964.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig11183:2660..3037+ (Himanthalia elongata Himel1 dioecious)
ATGTTCGCTGATATGCGCAAAGGAAGGGTGAGCTGGGCCATTCTGCCACT
GGTTGTACGTGCTCGCGAAGCCGGCATACCGTTGAGCACCGGGGTGTACA
ATGCGGCGATCGCGGCGTACATGAGCTCACCGAACAAGTACGCCGACGCC
TTGAAAGTTCTACAGTGGTTGAAGGATTCTGGGGATCCATACGTTAGACC
AGACGGTAAGTCCTACAACATTGTCATGCGTGTCTATAGCGAGGCTGGCA
AATGGAGGATGGTGTACGAGGTGGGTGGGTAGATGTTCGCTGATATGCGC
AAAGGAAGGGTGAGCTGGGCCATTCTGCCACTGGTTGTACGTGCTCGCGA
AGCCGGCATACCGTTGAGCACCGGGGTGTACAATGCGGCGATCGCGGCGT
ACATGAGCTCACCGAACAAGTACGCCGACGCCTTGAAAGTTCTACAGTGG
TTGAAGGATTCTGGGGATCCATACGTTAGACCAGACGGTAAGTCCTACAA
CATTGTCATGCGTGTCTATAGCGAGGCTGGCAAATGGAGGATGGTGTACG
AGGTGGGTGGGTAG
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