prot_H-elongata_contig11183.964.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig11183.964.1
Unique Nameprot_H-elongata_contig11183.964.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length94
Homology
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BLAST of mRNA_H-elongata_contig11183.964.1 vs. uniprot
Match: A0A6H5L472_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L472_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 3.350e-29
Identity = 57/90 (63.33%), Postives = 71/90 (78.89%), Query Frame = 0 
Query:    2 FADMRKGRVSWAILPLVVRAREAGIPLSTGVYNAAIAAYMSSPNKYADALKVLQWLKDSGDPYVRPDGKSYNIVMRVYSEAGKWRMVYEV 91
            F ++R+GRV WA+LPLV++A++AGIPLSTGVYNAAIAAY  +P KY DAL+VL  L+   DP VRPD  SYN  M V SEAG+WR+V E+
Sbjct:  261 FRNIREGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYAGTPRKYEDALRVLNMLRREEDPGVRPDLGSYNAAMWVCSEAGQWRLVMEL 350
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BLAST of mRNA_H-elongata_contig11183.964.1 vs. uniprot
Match: D7FLV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV0_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 3.770e-29
Identity = 57/90 (63.33%), Postives = 71/90 (78.89%), Query Frame = 0 
Query:    2 FADMRKGRVSWAILPLVVRAREAGIPLSTGVYNAAIAAYMSSPNKYADALKVLQWLKDSGDPYVRPDGKSYNIVMRVYSEAGKWRMVYEV 91
            F ++R+GRV WA+LPLV++A++AGIPLSTGVYNAAIAAY  +P KY DAL+VL  L+   DP VRPD  SYN  M V SEAG+WR+V E+
Sbjct:  211 FRNIREGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYSGTPRKYEDALRVLNMLRREEDPGVRPDLGSYNAAMWVCSEAGQWRLVMEL 300
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11183.964.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L472_9PHAE3.350e-2963.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FLV0_ECTSI3.770e-2963.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 4..91
e-value: 4.0E-10
score: 41.5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11183contigH-elongata_contig11183:2733..3014 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11183.964.1mRNA_H-elongata_contig11183.964.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig11183 2660..3037 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig11183.964.1 ID=prot_H-elongata_contig11183.964.1|Name=mRNA_H-elongata_contig11183.964.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MFADMRKGRVSWAILPLVVRAREAGIPLSTGVYNAAIAAYMSSPNKYADA
LKVLQWLKDSGDPYVRPDGKSYNIVMRVYSEAGKWRMVYEVGG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf