mRNA_H-elongata_contig111800.958.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111800.958.1
Unique NamemRNA_H-elongata_contig111800.958.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig111800.958.1 vs. uniprot
Match: A0A6H5LB75_9PHAE (Ribonuclease P n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB75_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.580e-47
Identity = 80/97 (82.47%), Postives = 89/97 (91.75%), Query Frame = 1
Query:    4 SLRRWGKKGKKPLVVLHSRHLVEKRLSLEAKEILKRWKEAEMVQSCAPKNNDDWYWLYAAVFASGRVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV 294
            +++++  +GKKPLVVLHSRHLVEKRLS EAKEI KRWKEA+M+QSCAPKNNDDWYWLYAAV+  G VLVLTNDEMRDHHFSMLSHRSFQRWKERHQ 
Sbjct:  685 AVKKFQDEGKKPLVVLHSRHLVEKRLSDEAKEIYKRWKEADMIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQA 781          
BLAST of mRNA_H-elongata_contig111800.958.1 vs. uniprot
Match: D7FNK8_ECTSI (PRORP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK8_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 2.550e-31
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 1
Query:  127 MVQSCAPKNNDDWYWLYAAVFASGRVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV 294
            M+QSCAPKNNDDWYWLYAAV+  G VLVLTNDEMRDHHFSMLSHRSFQRWKERHQ 
Sbjct:    1 MIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQA 56          
BLAST of mRNA_H-elongata_contig111800.958.1 vs. uniprot
Match: A0A8K1CJM4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJM4_PYTOL)

HSP 1 Score: 116 bits (290), Expect = 2.830e-28
Identity = 53/95 (55.79%), Postives = 67/95 (70.53%), Query Frame = 1
Query:   10 RRWGKKGKKPLVVLHSRHLVEKRLSLEAKEILKRWKEAEMVQSCAPKNNDDWYWLYAAVFASGRVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV 294
            R +  +GKK L+VLH R   + ++  E +E LK W E  ++ +C   NNDDWYWLYAAV   GR L++TNDEMRDHHF M+ +RSF RWKERHQV
Sbjct:  352 RHYEAQGKKTLIVLHKRRTYDDQVPTEYRETLKTWLEQNVMYNCRSGNNDDWYWLYAAVKLGGRTLMVTNDEMRDHHFQMIHNRSFTRWKERHQV 446          
BLAST of mRNA_H-elongata_contig111800.958.1 vs. uniprot
Match: A0A7S2BW17_9STRA (Ribonuclease P n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BW17_9STRA)

HSP 1 Score: 115 bits (288), Expect = 9.950e-28
Identity = 51/96 (53.12%), Postives = 71/96 (73.96%), Query Frame = 1
Query:    7 LRRWGKKGKKPLVVLHSRHLVEKRLSLEAKEILKRWKEAEMVQSCAPKNNDDWYWLYAAVFASGRVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV 294
            +R +   GK+ ++ LH RHL E+ L  + + I++RW+E +++ +    +NDDWYWLYAA++  G V ++TNDEMRDHHF MLSHR FQRWKERHQV
Sbjct:  443 IRHFEAAGKQVMLFLHKRHLFEQNLPAKYRHIVERWREQKVMYNTPVGSNDDWYWLYAALWLGGSVQLVTNDEMRDHHFQMLSHRDFQRWKERHQV 538          
BLAST of mRNA_H-elongata_contig111800.958.1 vs. uniprot
Match: W7TLK6_9STRA (Ribonuclease P n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLK6_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.920e-27
Identity = 50/94 (53.19%), Postives = 70/94 (74.47%), Query Frame = 1
Query:   28 GKKPLVVLHSRHLVEKRLSLEAKEILKRWKEAEMVQSCAPKNNDDWYWLYAAVFASGRVLVLTNDEMRDHHFSMLSHRSFQRWKERHQVSSAKG 309
            GKKPL+VLH+RH+  +R+      ++++W+E +++     +NNDDW+WL+A VF  GR L++TNDEMRDHHF MLS R+F RWKERHQV  + G
Sbjct:  407 GKKPLLVLHARHVDSRRVPPGYAALVQKWRERQLLLVVPYRNNDDWFWLFATVFKGGRTLLVTNDEMRDHHFQMLSQRTFLRWKERHQVHFSFG 500          
BLAST of mRNA_H-elongata_contig111800.958.1 vs. uniprot
Match: A0A2D4BKK1_PYTIN (Ribonuclease P n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKK1_PYTIN)

HSP 1 Score: 113 bits (283), Expect = 4.500e-27
Identity = 53/98 (54.08%), Postives = 68/98 (69.39%), Query Frame = 1
Query:    1 VSLRRWGKKGKKPLVVLHSRHLVEKRLSLEAKEILKRWKEAEMVQSCAPKNNDDWYWLYAAVFASGRVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV 294
            + L  + K+ KK LVVLH R   + ++  + + +L  WKE  ++ +C   NNDDWYWLYAAV   GR LV+TNDEMRDHHF M+ +RSF RWKERHQV
Sbjct:  464 LMLEYYEKQDKKVLVVLHKRRTYDDQVPEDFRPVLASWKERNIMYNCRSGNNDDWYWLYAAVKLGGRTLVVTNDEMRDHHFQMIHNRSFGRWKERHQV 561          
BLAST of mRNA_H-elongata_contig111800.958.1 vs. uniprot
Match: A0A067CVR5_SAPPC (Ribonuclease P n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CVR5_SAPPC)

HSP 1 Score: 112 bits (279), Expect = 7.800e-27
Identity = 53/107 (49.53%), Postives = 74/107 (69.16%), Query Frame = 1
Query:    7 LRRWGKKGKKPLVVLHSRHLVEKRLSLEAKEILKRWKEAEMVQSCAPKNNDDWYWLYAAVFASGRVLVLTNDEMRDHHFSMLSHRSFQRWKERHQVSSAKGIGIDSF 327
            L+ +  +GKK L+VLH R   ++ +  E + +++ WK+  ++ +C P NNDDWYWLYAAV   GR LV++NDEMRDHHFSM+++  FQRWKERH V   K  G  +F
Sbjct:  324 LQAYQARGKKVLIVLHKRRTKDREVPDELRPMVQSWKDDGVMFNCRPGNNDDWYWLYAAVKLGGRTLVVSNDEMRDHHFSMIANVDFQRWKERHLVHYDKVNGKFTF 430          
BLAST of mRNA_H-elongata_contig111800.958.1 vs. uniprot
Match: A0A425C9N1_9STRA (PRORP domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A425C9N1_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.100e-26
Identity = 49/90 (54.44%), Postives = 65/90 (72.22%), Query Frame = 1
Query:   25 KGKKPLVVLHSRHLVEKRLSLEAKEILKRWKEAEMVQSCAPKNNDDWYWLYAAVFASGRVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV 294
            KGKK L+VLH R   +K++ +E +  +  W+    + +C P NNDDWYWLYAAV   GR L+++NDEMRDHHF M+ +R+F RWKERHQV
Sbjct:   23 KGKKVLIVLHERRTSDKQVPIEYRAHIAEWRACHKMFNCQPGNNDDWYWLYAAVKLGGRTLMVSNDEMRDHHFQMIHNRAFGRWKERHQV 112          
BLAST of mRNA_H-elongata_contig111800.958.1 vs. uniprot
Match: A0A485KSQ4_9STRA (Ribonuclease P n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KSQ4_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.760e-26
Identity = 52/108 (48.15%), Postives = 73/108 (67.59%), Query Frame = 1
Query:    7 LRRWGKKGKKPLVVLHSRHLVEKRLSLEAKEILKRWKEAEMVQSCAPKNNDDWYWLYAAVFASGRVLVLTNDEMRDHHFSMLSHRSFQRWKERHQVS-SAKGIGIDSF 327
            L+ +  KGKK L+VLH R   + ++    + ++ +WKE  ++ +C P NNDDWYWLYAAV  SGR LV++NDEMRDHHF M+ +  F+RWKERH V    +G  ++ F
Sbjct:  308 LKAYEAKGKKTLIVLHKRRTKDHQVPEHHRAMVAQWKERGVMFNCLPGNNDDWYWLYAAVKFSGRTLVVSNDEMRDHHFQMIHNEDFRRWKERHLVHYEVRGAKLELF 415          
BLAST of mRNA_H-elongata_contig111800.958.1 vs. uniprot
Match: A0A7S2L070_9STRA (Ribonuclease P n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L070_9STRA)

HSP 1 Score: 110 bits (275), Expect = 3.310e-26
Identity = 52/99 (52.53%), Postives = 67/99 (67.68%), Query Frame = 1
Query:   28 GKKPLVVLHSRHLVEKRLSLEAKEILKRWKEAEMVQSCAPKNNDDWYWLYAAVFASGRVLVLTNDEMRDHHFSMLSHRSFQRWKERHQVSSAKGIGIDS 324
            GKK LVVLH RH   K +   A +I++RW E ++V      +NDDWYW +AA+++    LV+TNDEMRDHHF ML+HRSF RWKERHQ+    G  I +
Sbjct:  323 GKKVLVVLHERHFFSKLVPRSADKIIERWNENKLVFRTPYDSNDDWYWFHAALYSGMDTLVVTNDEMRDHHFQMLAHRSFLRWKERHQIRFHFGSWIST 421          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111800.958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LB75_9PHAE1.580e-4782.47Ribonuclease P n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
D7FNK8_ECTSI2.550e-3189.29PRORP domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A8K1CJM4_PYTOL2.830e-2855.79Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2BW17_9STRA9.950e-2853.13Ribonuclease P n=1 Tax=Dictyocha speculum TaxID=35... [more]
W7TLK6_9STRA2.920e-2753.19Ribonuclease P n=2 Tax=Monodopsidaceae TaxID=42507... [more]
A0A2D4BKK1_PYTIN4.500e-2754.08Ribonuclease P n=1 Tax=Pythium insidiosum TaxID=11... [more]
A0A067CVR5_SAPPC7.800e-2749.53Ribonuclease P n=2 Tax=Saprolegnia TaxID=4769 RepI... [more]
A0A425C9N1_9STRA1.100e-2654.44PRORP domain-containing protein n=2 Tax=Peronospor... [more]
A0A485KSQ4_9STRA1.760e-2648.15Ribonuclease P n=1 Tax=Aphanomyces stellatus TaxID... [more]
A0A7S2L070_9STRA3.310e-2652.53Ribonuclease P n=1 Tax=Leptocylindrus danicus TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111800contigH-elongata_contig111800:398..1595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue9.8e-23
Seed eggNOG ortholog36331.EPrPI00000020370
KEGG koko:K17655,ko:K18213
KEGG Pathwayko03013,map03013
EggNOG free text desc.Source PGD
EggNOG OGs1MF35@121069,COG0534@1,KOG1347@2759
EC3.1.26.5
COG Functional cat.V
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibonuclease Zc3h12a-like
Ec32 orthologEc-01_005100.1
Exons2
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929640.7996218-CDS-H-elongata_contig111800:397..6141622929640.7996218-CDS-H-elongata_contig111800:397..614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111800 398..614 -
1691679102.069155-CDS-H-elongata_contig111800:397..6141691679102.069155-CDS-H-elongata_contig111800:397..614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111800 398..614 -
1622929640.8146343-CDS-H-elongata_contig111800:1485..15951622929640.8146343-CDS-H-elongata_contig111800:1485..1595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111800 1486..1595 -
1691679102.0825815-CDS-H-elongata_contig111800:1485..15951691679102.0825815-CDS-H-elongata_contig111800:1485..1595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111800 1486..1595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111800.958.1prot_H-elongata_contig111800.958.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111800 398..1595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111800.958.1

>prot_H-elongata_contig111800.958.1 ID=prot_H-elongata_contig111800.958.1|Name=mRNA_H-elongata_contig111800.958.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
VSLRRWGKKGKKPLVVLHSRHLVEKRLSLEAKEILKRWKEAEMVQSCAPK
NNDDWYWLYAAVFASGRVLVLTNDEMRDHHFSMLSHRSFQRWKERHQVSS
AKGIGIDSF
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mRNA from alignment at H-elongata_contig111800:398..1595-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111800.958.1 ID=mRNA_H-elongata_contig111800.958.1|Name=mRNA_H-elongata_contig111800.958.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1198bp|location=Sequence derived from alignment at H-elongata_contig111800:398..1595- (Himanthalia elongata Himel1 dioecious)
GTTTCGTTGCGGCGGTGGGGGAAAAAGGGAAAGAAGCCTCTAGTCGTGCT TCACAGTCGGCATCTGGTAGAGAAACGCTTGTCTCTCGAAGCCAAGGAGA TCCTCAAGCGGTAAGGCGAAAAAAATGAGTGCGCAACCTCCCAATATCCT TTTTTGCCGTTCGTGAGTCGGATCCTATCCAAAATTTCCGGTCCTAGCTA AAGGCGTCTTTCTAGGCTGTAGTTGTACCTGTACCAACAATATCTTTTCA ATATTGCAGTAGGAAGTCTTTCCACAAACACCACCATAGCTTTTCGTTCC TCATCATGATGTCCACGGTCTCTCGCTCGCCCCTTCGACTATTGCTTCTC GTTTTTGCTTTTTCGCAGAGGGGAAGGGGGGGGGGGGGGGGANNNNNNNN NNTCTTTATGTCTTCCCGGTTTTTTCCCCCCCCCCTTGATTTTTTTTTTT TTTTTTTTTTTTTTCGGAGGGGGGGAGGGGGGGGGGGGGAGGGTAAACGC CCTTTCCATGTTTTTGTGTAATTTCCAACCGGAAACCCTCAAGAGGCGTA TTTTAAACACTTGAATGTAGAGCTCAACGGTTCGCCAGACCGTCAGGAGC TCACAAGGAGTTGCGTGAAAGCACTATAGACTAGAGAGATAAATAAACGA TTAAATCTTGAACCCCTCTTAATACCTGTGTAGTCTAATGTCAAGTATTT TCTTGTGGACATTTTGTGCTCATTGCTAGGAATGTACACACTGCTCGAAC CTGACGATAGTTGGTCGTAGTCCCCTTGACTTTATCACTCGTGGTGTACT GAAGTATATAGGATATAGTGTGGATGTTCGGAGGGTTTGGTTGAGTTCAT CTATGTTTTTCGATAAACAACTAGAACTATAAGAGTAATAAATATAGTCT AAATAATACACCCCCGAGAAACGATCGAGAAACGATCCGAATCGGACGCA TTATGAAGCCTTATGACGCATCGTGCAACAGATGGAAGGAGGCGGAGATG GTCCAATCCTGCGCGCCTAAGAATAACGACGACTGGTACTGGCTCTACGC CGCGGTGTTCGCCAGCGGCAGGGTGCTGGTTCTTACCAACGACGAAATGA GAGACCACCACTTCTCGATGTTGTCTCATCGATCTTTTCAGCGGTGGAAG GAGAGGCACCAGGTGTCAAGCGCCAAGGGCATCGGCATAGATAGTTTC
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Coding sequence (CDS) from alignment at H-elongata_contig111800:398..1595-

>mRNA_H-elongata_contig111800.958.1 ID=mRNA_H-elongata_contig111800.958.1|Name=mRNA_H-elongata_contig111800.958.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig111800:398..1595- (Himanthalia elongata Himel1 dioecious)
GTTTCGTTGCGGCGGTGGGGGAAAAAGGGAAAGAAGCCTCTAGTCGTGCT
TCACAGTCGGCATCTGGTAGAGAAACGCTTGTCTCTCGAAGCCAAGGAGA
TCCTCAAGCGGTTTCGTTGCGGCGGTGGGGGAAAAAGGGAAAGAAGCCTC
TAGTCGTGCTTCACAGTCGGCATCTGGTAGAGAAACGCTTGTCTCTCGAA
GCCAAGGAGATCCTCAAGCGATGGAAGGAGGCGGAGATGGTCCAATCCTG
CGCGCCTAAGAATAACGACGACTGGTACTGGCTCTACGCCGCGGTGTTCG
CCAGCGGCAGGGTGCTGGTTCTTACCAACGACGAAATGAGAGACCACCAC
TTCTCGATGTTGTCTCATCGATCTTTTCAGCGGTGGAAGGAGAGGCACCA
GGTGTCAAGCGCCAAGGGCATCGGCATAGATAGTTTCATGGAAGGAGGCG
GAGATGGTCCAATCCTGCGCGCCTAAGAATAACGACGACTGGTACTGGCT
CTACGCCGCGGTGTTCGCCAGCGGCAGGGTGCTGGTTCTTACCAACGACG
AAATGAGAGACCACCACTTCTCGATGTTGTCTCATCGATCTTTTCAGCGG
TGGAAGGAGAGGCACCAGGTGTCAAGCGCCAAGGGCATCGGCATAGATAG
TTTC
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