mRNA_H-elongata_contig111800.958.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig111800.958.1 vs. uniprot
Match: A0A6H5LB75_9PHAE (Ribonuclease P n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB75_9PHAE) HSP 1 Score: 171 bits (434), Expect = 1.580e-47 Identity = 80/97 (82.47%), Postives = 89/97 (91.75%), Query Frame = 1
Query: 4 SLRRWGKKGKKPLVVLHSRHLVEKRLSLEAKEILKRWKEAEMVQSCAPKNNDDWYWLYAAVFASGRVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV 294
+++++ +GKKPLVVLHSRHLVEKRLS EAKEI KRWKEA+M+QSCAPKNNDDWYWLYAAV+ G VLVLTNDEMRDHHFSMLSHRSFQRWKERHQ
Sbjct: 685 AVKKFQDEGKKPLVVLHSRHLVEKRLSDEAKEIYKRWKEADMIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQA 781
BLAST of mRNA_H-elongata_contig111800.958.1 vs. uniprot
Match: D7FNK8_ECTSI (PRORP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK8_ECTSI) HSP 1 Score: 115 bits (289), Expect = 2.550e-31 Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 1
Query: 127 MVQSCAPKNNDDWYWLYAAVFASGRVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV 294
M+QSCAPKNNDDWYWLYAAV+ G VLVLTNDEMRDHHFSMLSHRSFQRWKERHQ
Sbjct: 1 MIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQA 56
BLAST of mRNA_H-elongata_contig111800.958.1 vs. uniprot
Match: A0A8K1CJM4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJM4_PYTOL) HSP 1 Score: 116 bits (290), Expect = 2.830e-28 Identity = 53/95 (55.79%), Postives = 67/95 (70.53%), Query Frame = 1
Query: 10 RRWGKKGKKPLVVLHSRHLVEKRLSLEAKEILKRWKEAEMVQSCAPKNNDDWYWLYAAVFASGRVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV 294
R + +GKK L+VLH R + ++ E +E LK W E ++ +C NNDDWYWLYAAV GR L++TNDEMRDHHF M+ +RSF RWKERHQV
Sbjct: 352 RHYEAQGKKTLIVLHKRRTYDDQVPTEYRETLKTWLEQNVMYNCRSGNNDDWYWLYAAVKLGGRTLMVTNDEMRDHHFQMIHNRSFTRWKERHQV 446
BLAST of mRNA_H-elongata_contig111800.958.1 vs. uniprot
Match: A0A7S2BW17_9STRA (Ribonuclease P n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BW17_9STRA) HSP 1 Score: 115 bits (288), Expect = 9.950e-28 Identity = 51/96 (53.12%), Postives = 71/96 (73.96%), Query Frame = 1
Query: 7 LRRWGKKGKKPLVVLHSRHLVEKRLSLEAKEILKRWKEAEMVQSCAPKNNDDWYWLYAAVFASGRVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV 294
+R + GK+ ++ LH RHL E+ L + + I++RW+E +++ + +NDDWYWLYAA++ G V ++TNDEMRDHHF MLSHR FQRWKERHQV
Sbjct: 443 IRHFEAAGKQVMLFLHKRHLFEQNLPAKYRHIVERWREQKVMYNTPVGSNDDWYWLYAALWLGGSVQLVTNDEMRDHHFQMLSHRDFQRWKERHQV 538
BLAST of mRNA_H-elongata_contig111800.958.1 vs. uniprot
Match: W7TLK6_9STRA (Ribonuclease P n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLK6_9STRA) HSP 1 Score: 114 bits (284), Expect = 2.920e-27 Identity = 50/94 (53.19%), Postives = 70/94 (74.47%), Query Frame = 1
Query: 28 GKKPLVVLHSRHLVEKRLSLEAKEILKRWKEAEMVQSCAPKNNDDWYWLYAAVFASGRVLVLTNDEMRDHHFSMLSHRSFQRWKERHQVSSAKG 309
GKKPL+VLH+RH+ +R+ ++++W+E +++ +NNDDW+WL+A VF GR L++TNDEMRDHHF MLS R+F RWKERHQV + G
Sbjct: 407 GKKPLLVLHARHVDSRRVPPGYAALVQKWRERQLLLVVPYRNNDDWFWLFATVFKGGRTLLVTNDEMRDHHFQMLSQRTFLRWKERHQVHFSFG 500
BLAST of mRNA_H-elongata_contig111800.958.1 vs. uniprot
Match: A0A2D4BKK1_PYTIN (Ribonuclease P n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKK1_PYTIN) HSP 1 Score: 113 bits (283), Expect = 4.500e-27 Identity = 53/98 (54.08%), Postives = 68/98 (69.39%), Query Frame = 1
Query: 1 VSLRRWGKKGKKPLVVLHSRHLVEKRLSLEAKEILKRWKEAEMVQSCAPKNNDDWYWLYAAVFASGRVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV 294
+ L + K+ KK LVVLH R + ++ + + +L WKE ++ +C NNDDWYWLYAAV GR LV+TNDEMRDHHF M+ +RSF RWKERHQV
Sbjct: 464 LMLEYYEKQDKKVLVVLHKRRTYDDQVPEDFRPVLASWKERNIMYNCRSGNNDDWYWLYAAVKLGGRTLVVTNDEMRDHHFQMIHNRSFGRWKERHQV 561
BLAST of mRNA_H-elongata_contig111800.958.1 vs. uniprot
Match: A0A067CVR5_SAPPC (Ribonuclease P n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CVR5_SAPPC) HSP 1 Score: 112 bits (279), Expect = 7.800e-27 Identity = 53/107 (49.53%), Postives = 74/107 (69.16%), Query Frame = 1
Query: 7 LRRWGKKGKKPLVVLHSRHLVEKRLSLEAKEILKRWKEAEMVQSCAPKNNDDWYWLYAAVFASGRVLVLTNDEMRDHHFSMLSHRSFQRWKERHQVSSAKGIGIDSF 327
L+ + +GKK L+VLH R ++ + E + +++ WK+ ++ +C P NNDDWYWLYAAV GR LV++NDEMRDHHFSM+++ FQRWKERH V K G +F
Sbjct: 324 LQAYQARGKKVLIVLHKRRTKDREVPDELRPMVQSWKDDGVMFNCRPGNNDDWYWLYAAVKLGGRTLVVSNDEMRDHHFSMIANVDFQRWKERHLVHYDKVNGKFTF 430
BLAST of mRNA_H-elongata_contig111800.958.1 vs. uniprot
Match: A0A425C9N1_9STRA (PRORP domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A425C9N1_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.100e-26 Identity = 49/90 (54.44%), Postives = 65/90 (72.22%), Query Frame = 1
Query: 25 KGKKPLVVLHSRHLVEKRLSLEAKEILKRWKEAEMVQSCAPKNNDDWYWLYAAVFASGRVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV 294
KGKK L+VLH R +K++ +E + + W+ + +C P NNDDWYWLYAAV GR L+++NDEMRDHHF M+ +R+F RWKERHQV
Sbjct: 23 KGKKVLIVLHERRTSDKQVPIEYRAHIAEWRACHKMFNCQPGNNDDWYWLYAAVKLGGRTLMVSNDEMRDHHFQMIHNRAFGRWKERHQV 112
BLAST of mRNA_H-elongata_contig111800.958.1 vs. uniprot
Match: A0A485KSQ4_9STRA (Ribonuclease P n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KSQ4_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.760e-26 Identity = 52/108 (48.15%), Postives = 73/108 (67.59%), Query Frame = 1
Query: 7 LRRWGKKGKKPLVVLHSRHLVEKRLSLEAKEILKRWKEAEMVQSCAPKNNDDWYWLYAAVFASGRVLVLTNDEMRDHHFSMLSHRSFQRWKERHQVS-SAKGIGIDSF 327
L+ + KGKK L+VLH R + ++ + ++ +WKE ++ +C P NNDDWYWLYAAV SGR LV++NDEMRDHHF M+ + F+RWKERH V +G ++ F
Sbjct: 308 LKAYEAKGKKTLIVLHKRRTKDHQVPEHHRAMVAQWKERGVMFNCLPGNNDDWYWLYAAVKFSGRTLVVSNDEMRDHHFQMIHNEDFRRWKERHLVHYEVRGAKLELF 415
BLAST of mRNA_H-elongata_contig111800.958.1 vs. uniprot
Match: A0A7S2L070_9STRA (Ribonuclease P n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L070_9STRA) HSP 1 Score: 110 bits (275), Expect = 3.310e-26 Identity = 52/99 (52.53%), Postives = 67/99 (67.68%), Query Frame = 1
Query: 28 GKKPLVVLHSRHLVEKRLSLEAKEILKRWKEAEMVQSCAPKNNDDWYWLYAAVFASGRVLVLTNDEMRDHHFSMLSHRSFQRWKERHQVSSAKGIGIDS 324
GKK LVVLH RH K + A +I++RW E ++V +NDDWYW +AA+++ LV+TNDEMRDHHF ML+HRSF RWKERHQ+ G I +
Sbjct: 323 GKKVLVVLHERHFFSKLVPRSADKIIERWNENKLVFRTPYDSNDDWYWFHAALYSGMDTLVVTNDEMRDHHFQMLAHRSFLRWKERHQIRFHFGSWIST 421 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111800.958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig111800.958.1 >prot_H-elongata_contig111800.958.1 ID=prot_H-elongata_contig111800.958.1|Name=mRNA_H-elongata_contig111800.958.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp VSLRRWGKKGKKPLVVLHSRHLVEKRLSLEAKEILKRWKEAEMVQSCAPKback to top mRNA from alignment at H-elongata_contig111800:398..1595- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig111800.958.1 ID=mRNA_H-elongata_contig111800.958.1|Name=mRNA_H-elongata_contig111800.958.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1198bp|location=Sequence derived from alignment at H-elongata_contig111800:398..1595- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig111800:398..1595- >mRNA_H-elongata_contig111800.958.1 ID=mRNA_H-elongata_contig111800.958.1|Name=mRNA_H-elongata_contig111800.958.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig111800:398..1595- (Himanthalia elongata Himel1 dioecious)back to top |