mRNA_H-elongata_contig111271.925.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111271.925.1
Unique NamemRNA_H-elongata_contig111271.925.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig111271.925.1 vs. uniprot
Match: A0A6H5KT07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 4.130e-73
Identity = 131/198 (66.16%), Postives = 135/198 (68.18%), Query Frame = 1
Query:    1 QGSTRGWGVALATHGFPRGSGLHRWRVRLDSVNRRGHIFLGVATRQTALGSYLGADRHGWGYLVSQDLYHGGSRLRSGYGSRMSAGMTVELTLNTDIGLLSVGNTDSGEDFGPAMSNL---TGGD---------------------------------------------------MQGTLWPAFAMHQPGDLVTFLP 432
            QG  RGWGVALATHGF RGSG+HRWRVRLDSVNRRGH+FLGVATRQTALGSYLGADRHGWGYLVSQDLYHGGSRLRSGYG+RMSAGMTVELTLNTDIGLLSVGN D+GEDFGPAMSNL    GG                                                     Q TLWPAFAMHQPGD VTFLP
Sbjct: 2403 QGPARGWGVALATHGFARGSGIHRWRVRLDSVNRRGHVFLGVATRQTALGSYLGADRHGWGYLVSQDLYHGGSRLRSGYGARMSAGMTVELTLNTDIGLLSVGNADTGEDFGPAMSNLYENVGGGGSFGGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADAQQATLWPAFAMHQPGDSVTFLP 2600          
BLAST of mRNA_H-elongata_contig111271.925.1 vs. uniprot
Match: A0A1V9YS56_9STRA (HECT E3 ubiquitin ligase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YS56_9STRA)

HSP 1 Score: 129 bits (325), Expect = 4.580e-32
Identity = 63/144 (43.75%), Postives = 89/144 (61.81%), Query Frame = 1
Query:    1 QGSTRGWGVALATHGFPRGSGLHRWRVRLDSVNRRGHIFLGVATRQTALGSYLGADRHGWGYLVSQDLYHGGSRLRSGYGSRMSAGMTVELTLNTDIGLLSVGNTDSGEDFGPAMSNLTGGDMQGTLWPAFAMHQPGDLVTFLP 432
            Q + + WG+ L+T+G    +GLH W VRLD   + GH+FLGV+TR+ ++ +Y+G DRHGWG + ++ L+H  S++R  YG   S G  V + LNTD G LS G  D   D+G A   LT     GTL+PA  ++Q  D VT +P
Sbjct:  802 QHTAKQWGMVLSTYGCAPNTGLHEWAVRLDRCEK-GHVFLGVSTREASVATYVGGDRHGWGLIGTRALWHNRSKVRGDYGDGFSTGSVVRIRLNTDTGALSFGLLDDDSDWGVAFDGLT---QHGTLYPAIGLYQRDDQVTIVP 941          
BLAST of mRNA_H-elongata_contig111271.925.1 vs. uniprot
Match: T0QV62_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QV62_SAPDV)

HSP 1 Score: 129 bits (324), Expect = 6.460e-32
Identity = 63/144 (43.75%), Postives = 89/144 (61.81%), Query Frame = 1
Query:    1 QGSTRGWGVALATHGFPRGSGLHRWRVRLDSVNRRGHIFLGVATRQTALGSYLGADRHGWGYLVSQDLYHGGSRLRSGYGSRMSAGMTVELTLNTDIGLLSVGNTDSGEDFGPAMSNLTGGDMQGTLWPAFAMHQPGDLVTFLP 432
            Q + + WG+ L+T+G    +GLH W VRLD   + GH+FLGV+TR+ ++ +Y+G DRHGWG + ++ L+H  S++R  YG   S G  V + LNTD G LS G  D   D+G A   LT     GTL+PA  ++Q  D VT +P
Sbjct:  843 QHTAKQWGMVLSTYGCAPNTGLHEWAVRLDRCEK-GHVFLGVSTREASVATYVGGDRHGWGLIGTRALWHNRSKVRGDYGDGFSTGSVVRIRLNTDTGALSFGLLDDDSDWGIAFDGLT---QHGTLYPAIGLYQRDDQVTLVP 982          
BLAST of mRNA_H-elongata_contig111271.925.1 vs. uniprot
Match: A0A485L796_9STRA (Aste57867_15865 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L796_9STRA)

HSP 1 Score: 127 bits (318), Expect = 4.140e-31
Identity = 62/144 (43.06%), Postives = 88/144 (61.11%), Query Frame = 1
Query:    1 QGSTRGWGVALATHGFPRGSGLHRWRVRLDSVNRRGHIFLGVATRQTALGSYLGADRHGWGYLVSQDLYHGGSRLRSGYGSRMSAGMTVELTLNTDIGLLSVGNTDSGEDFGPAMSNLTGGDMQGTLWPAFAMHQPGDLVTFLP 432
            Q + + WG+ ++T+G    +GLH W VRLD   + GH+FLGV TR+ ++ +Y+G DR GWG + ++ L+H  S++R  YG   S G TV + LNTD G LS G  D   D+G A   LT     GTL+PA  ++Q  D VT +P
Sbjct:  835 QHTAKQWGMVISTYGCAPNTGLHEWAVRLDRCEK-GHVFLGVCTREASVSTYVGGDRQGWGLIGTRALWHNRSKVRGDYGDGFSTGSTVRIRLNTDTGALSFGLLDEDSDWGVAFDGLT---QYGTLYPAIGLYQRDDQVTIVP 974          
BLAST of mRNA_H-elongata_contig111271.925.1 vs. uniprot
Match: A0A1V9ZRW4_9STRA (HECT E3 ubiquitin ligase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZRW4_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.050e-30
Identity = 61/143 (42.66%), Postives = 88/143 (61.54%), Query Frame = 1
Query:    1 QGSTRGWGVALATHGFPRGSGLHRWRVRLDSVNRRGHIFLGVATRQTALGSYLGADRHGWGYLVSQDLYHGGSRLRSGYGSRMSAGMTVELTLNTDIGLLSVGNTDSGEDFGPAMSNLTGGDMQGTLWPAFAMHQPGDLVTFL 429
            Q + + WG+ L+T+G    +G+H W VRLD   + GH+FLGV+TR+ ++ +Y+G DRHGWG + ++ L+H  S++R  YG   S G  V + LNTD G LS G  D   D+G A   LT     GTL+PA  ++Q  D VT +
Sbjct:  837 QHTAKQWGMVLSTYGCAPNTGVHEWAVRLDRCEK-GHVFLGVSTREASVATYVGGDRHGWGLIGTRALWHNRSKVRGDYGDGFSTGSVVRIRLNTDTGALSFGLLDDDSDWGVAFDGLT---QHGTLYPAIGLYQRDDQVTLV 975          
BLAST of mRNA_H-elongata_contig111271.925.1 vs. uniprot
Match: A0A6A5A8C6_9STRA (B30.2/SPRY domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A8C6_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.310e-30
Identity = 62/144 (43.06%), Postives = 85/144 (59.03%), Query Frame = 1
Query:    1 QGSTRGWGVALATHGFPRGSGLHRWRVRLDSVNRRGHIFLGVATRQTALGSYLGADRHGWGYLVSQDLYHGGSRLRSGYGSRMSAGMTVELTLNTDIGLLSVGNTDSGEDFGPAMSNLTGGDMQGTLWPAFAMHQPGDLVTFLP 432
            Q + + WG+ L+T+     +GLH W VRLD   + GH+FLGV TR  A+ +Y+G DR GWG + ++ L+H  S++R  YG   S G TV + LNTD G LS G  D   D+G A   LT     G L+PA  ++Q  D VT +P
Sbjct:  207 QHTAKQWGMVLSTYACAPNTGLHEWAVRLDRCEK-GHVFLGVCTRDAAVSTYVGGDRQGWGLIGTRALWHNRSKVRGDYGDGFSTGSTVRIRLNTDTGALSFGLVDDDSDWGTAFDGLT---QYGALYPAIGLYQRDDQVTLVP 346          
BLAST of mRNA_H-elongata_contig111271.925.1 vs. uniprot
Match: A0A397F9E8_9STRA (B30.2/SPRY domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F9E8_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.480e-30
Identity = 62/144 (43.06%), Postives = 85/144 (59.03%), Query Frame = 1
Query:    1 QGSTRGWGVALATHGFPRGSGLHRWRVRLDSVNRRGHIFLGVATRQTALGSYLGADRHGWGYLVSQDLYHGGSRLRSGYGSRMSAGMTVELTLNTDIGLLSVGNTDSGEDFGPAMSNLTGGDMQGTLWPAFAMHQPGDLVTFLP 432
            Q + + WG+ L+T+     +GLH W VRLD   + GH+FLGV TR  A+ +Y+G DR GWG + ++ L+H  S++R  YG   S G TV + LNTD G LS G  D   D+G A   LT     G L+PA  ++Q  D VT +P
Sbjct:  328 QHTAKQWGMVLSTYACAPNTGLHEWAVRLDRCEK-GHVFLGVCTRDAAVSTYVGGDRQGWGLIGTRALWHNRSKVRGDYGDGFSTGSTVRIRLNTDTGALSFGLVDDDSDWGTAFDGLT---QYGALYPAIGLYQRDDQVTLVP 467          
BLAST of mRNA_H-elongata_contig111271.925.1 vs. uniprot
Match: A0A397A7N1_9STRA (B30.2/SPRY domain-containing protein (Fragment) n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A7N1_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.520e-30
Identity = 62/144 (43.06%), Postives = 85/144 (59.03%), Query Frame = 1
Query:    1 QGSTRGWGVALATHGFPRGSGLHRWRVRLDSVNRRGHIFLGVATRQTALGSYLGADRHGWGYLVSQDLYHGGSRLRSGYGSRMSAGMTVELTLNTDIGLLSVGNTDSGEDFGPAMSNLTGGDMQGTLWPAFAMHQPGDLVTFLP 432
            Q + + WG+ L+T+     +GLH W VRLD   + GH+FLGV TR  A+ +Y+G DR GWG + ++ L+H  S++R  YG   S G TV + LNTD G LS G  D   D+G A   LT     G L+PA  ++Q  D VT +P
Sbjct:  328 QHTAKQWGMVLSTYACAPNTGLHEWAVRLDRCEK-GHVFLGVCTRDAAVSTYVGGDRQGWGLIGTRALWHNRSKVRGDYGDGFSTGSTVRIRLNTDTGALSFGLVDDDSDWGTAFDGLT---QYGALYPAIGLYQRDDQVTLVP 467          
BLAST of mRNA_H-elongata_contig111271.925.1 vs. uniprot
Match: A0A397ANH5_9STRA (B30.2/SPRY domain-containing protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ANH5_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.550e-30
Identity = 62/144 (43.06%), Postives = 85/144 (59.03%), Query Frame = 1
Query:    1 QGSTRGWGVALATHGFPRGSGLHRWRVRLDSVNRRGHIFLGVATRQTALGSYLGADRHGWGYLVSQDLYHGGSRLRSGYGSRMSAGMTVELTLNTDIGLLSVGNTDSGEDFGPAMSNLTGGDMQGTLWPAFAMHQPGDLVTFLP 432
            Q + + WG+ L+T+     +GLH W VRLD   + GH+FLGV TR  A+ +Y+G DR GWG + ++ L+H  S++R  YG   S G TV + LNTD G LS G  D   D+G A   LT     G L+PA  ++Q  D VT +P
Sbjct:  328 QHTAKQWGMVLSTYACAPNTGLHEWAVRLDRCEK-GHVFLGVCTRDAAVSTYVGGDRQGWGLIGTRALWHNRSKVRGDYGDGFSTGSTVRIRLNTDTGALSFGLVDDDSDWGTAFDGLT---QYGALYPAIGLYQRDDQVTLVP 467          
BLAST of mRNA_H-elongata_contig111271.925.1 vs. uniprot
Match: A0A3L6VC71_9STRA (B30.2/SPRY domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VC71_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.580e-30
Identity = 62/144 (43.06%), Postives = 85/144 (59.03%), Query Frame = 1
Query:    1 QGSTRGWGVALATHGFPRGSGLHRWRVRLDSVNRRGHIFLGVATRQTALGSYLGADRHGWGYLVSQDLYHGGSRLRSGYGSRMSAGMTVELTLNTDIGLLSVGNTDSGEDFGPAMSNLTGGDMQGTLWPAFAMHQPGDLVTFLP 432
            Q + + WG+ L+T+     +GLH W VRLD   + GH+FLGV TR  A+ +Y+G DR GWG + ++ L+H  S++R  YG   S G TV + LNTD G LS G  D   D+G A   LT     G L+PA  ++Q  D VT +P
Sbjct:  856 QHTAKQWGMVLSTYACAPNTGLHEWAVRLDRCEK-GHVFLGVCTRDAAVSTYVGGDRQGWGLIGTRALWHNRSKVRGDYGDGFSTGSTVRIRLNTDTGALSFGLVDDDSDWGTAFDGLT---QYGALYPAIGLYQRDDQVTLVP 995          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111271.925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT07_9PHAE4.130e-7366.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1V9YS56_9STRA4.580e-3243.75HECT E3 ubiquitin ligase (Fragment) n=1 Tax=Thraus... [more]
T0QV62_SAPDV6.460e-3243.75Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A485L796_9STRA4.140e-3143.06Aste57867_15865 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9ZRW4_9STRA1.050e-3042.66HECT E3 ubiquitin ligase n=1 Tax=Achlya hypogyna T... [more]
A0A6A5A8C6_9STRA2.310e-3043.06B30.2/SPRY domain-containing protein n=1 Tax=Aphan... [more]
A0A397F9E8_9STRA2.480e-3043.06B30.2/SPRY domain-containing protein (Fragment) n=... [more]
A0A397A7N1_9STRA2.520e-3043.06B30.2/SPRY domain-containing protein (Fragment) n=... [more]
A0A397ANH5_9STRA2.550e-3043.06B30.2/SPRY domain-containing protein (Fragment) n=... [more]
A0A3L6VC71_9STRA2.580e-3043.06B30.2/SPRY domain-containing protein n=2 Tax=Aphan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111271contigH-elongata_contig111271:1248..1856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue2.3e-27
Seed eggNOG ortholog112098.XP_008604658.1
KEGG koko:K10608
KEGG Pathwayko04120,map04120
EggNOG free text desc.RNA localization to chromatin
EggNOG OGsCOG5184@1,KOG1426@2759,KOG2177@1,KOG2177@2759,KOG2242@1,KOG2242@2759
EC2.3.2.27
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.9689662-CDS-H-elongata_contig111271:1247..13261622929636.9689662-CDS-H-elongata_contig111271:1247..1326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111271 1248..1326 -
1691679100.6271775-CDS-H-elongata_contig111271:1247..13261691679100.6271775-CDS-H-elongata_contig111271:1247..1326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111271 1248..1326 -
1622929636.98279-CDS-H-elongata_contig111271:1503..18561622929636.98279-CDS-H-elongata_contig111271:1503..1856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111271 1504..1856 -
1691679100.6366465-CDS-H-elongata_contig111271:1503..18561691679100.6366465-CDS-H-elongata_contig111271:1503..1856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111271 1504..1856 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111271.925.1prot_H-elongata_contig111271.925.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111271 1248..1856 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111271.925.1

>prot_H-elongata_contig111271.925.1 ID=prot_H-elongata_contig111271.925.1|Name=mRNA_H-elongata_contig111271.925.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
QGSTRGWGVALATHGFPRGSGLHRWRVRLDSVNRRGHIFLGVATRQTALG
SYLGADRHGWGYLVSQDLYHGGSRLRSGYGSRMSAGMTVELTLNTDIGLL
SVGNTDSGEDFGPAMSNLTGGDMQGTLWPAFAMHQPGDLVTFLP
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mRNA from alignment at H-elongata_contig111271:1248..1856-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111271.925.1 ID=mRNA_H-elongata_contig111271.925.1|Name=mRNA_H-elongata_contig111271.925.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=609bp|location=Sequence derived from alignment at H-elongata_contig111271:1248..1856- (Himanthalia elongata Himel1 dioecious)
CAGGGTTCCACTCGAGGATGGGGCGTTGCCCTTGCTACCCACGGGTTTCC TCGGGGAAGTGGCCTTCATCGCTGGAGGGTGCGCCTCGACAGCGTGAACC GTCGGGGTCACATCTTCCTGGGCGTTGCAACCCGGCAGACCGCCCTCGGC AGCTATCTGGGGGCCGACAGACACGGCTGGGGTTACCTCGTGAGCCAGGA CCTTTACCACGGTGGATCGCGGCTGAGGTCCGGCTACGGGTCGCGGATGT CTGCTGGCATGACCGTGGAGCTGACCCTCAACACGGACATCGGCCTGCTT TCGGTGGGCAACACGGACTCAGGAGAAGATTTCGGTCCGGCGATGAGCAA CCTGTACCAAGACATCGACGGCGCGTCGGGGTTCATCTCGAGCCTAGGTG GAGGAAGCGGCGGCAACAGGGATGCTAGAATTGACGGACGCGGTGGCGGA GCGTCTTCGACGCGTATCGTCGCTGCGGCCGCCGCTGCCAACGCTGCCGC AGCGGCAGCTACTCTTGGCGTCGCCGGTAGAACAGGGGGTGACATGCAGG GCACTCTGTGGCCGGCGTTTGCGATGCACCAACCGGGGGACTTAGTTACG TTCTTGCCG
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Coding sequence (CDS) from alignment at H-elongata_contig111271:1248..1856-

>mRNA_H-elongata_contig111271.925.1 ID=mRNA_H-elongata_contig111271.925.1|Name=mRNA_H-elongata_contig111271.925.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig111271:1248..1856- (Himanthalia elongata Himel1 dioecious)
CAGGGTTCCACTCGAGGATGGGGCGTTGCCCTTGCTACCCACGGGTTTCC
TCGGGGAAGTGGCCTTCATCGCTGGAGGGTGCGCCTCGACAGCGTGAACC
GTCGGGGTCACATCTTCCTGGGCGTTGCAACCCGGCAGACCGCCCTCGGC
AGCTATCTGGGGGCCGACAGACACGGCTGGGGTTACCTCGTGAGCCAGGA
CCTTTACCACGGTGGATCGCGGCTGAGGTCCGGCTACGGGTCGCGGATGT
CTGCTGGCATGACCGTGGAGCTGACCCTCAACACGGACATCGGCCTGCTT
TCGGTGGGCAACACGGACTCAGGAGAAGATTTCGGTCCGGCGATGAGCAA
CCTCAGGGTTCCACTCGAGGATGGGGCGTTGCCCTTGCTACCCACGGGTT
TCCTCGGGGAAGTGGCCTTCATCGCTGGAGGGTGCGCCTCGACAGCGTGA
ACCGTCGGGGTCACATCTTCCTGGGCGTTGCAACCCGGCAGACCGCCCTC
GGCAGCTATCTGGGGGCCGACAGACACGGCTGGGGTTACCTCGTGAGCCA
GGACCTTTACCACGGTGGATCGCGGCTGAGGTCCGGCTACGGGTCGCGGA
TGTCTGCTGGCATGACCGTGGAGCTGACCCTCAACACGGACATCGGCCTG
CTTTCGGTGGGCAACACGGACTCAGGAGAAGATTTCGGTCCGGCGATGAG
CAACCTAACAGGGGGTGACATGCAGGGCACTCTGTGGCCGGCGTTTGCGA
TGCACCAACCGGGGGACTTAGTTACGTTCTTGCCGAACAGGGGGTGACAT
GCAGGGCACTCTGTGGCCGGCGTTTGCGATGCACCAACCGGGGGACTTAG
TTACGTTCTTGCCG
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