mRNA_H-elongata_contig110556.874.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig110556.874.1 vs. uniprot
Match: D7FXY4_ECTSI (Repressor of RNA polymerase III transcription n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXY4_ECTSI) HSP 1 Score: 244 bits (624), Expect = 5.980e-79 Identity = 131/195 (67.18%), Postives = 137/195 (70.26%), Query Frame = 1
Query: 1 KKAGDDKRLSKELERHMKEKMSTSPASYG------------------------------------LSASKSFGELTEPGVRRTLVDLICTMNASFPDHDFSGVRPDHFQKEPSVSLVRNRVNAALAEVSVIHNKIFLESFWADLDEVMKLKDCEVYTYSPDNEGDPFTEGCLWSFNHFFLNKALKRVLFLHCTTK 477
KKAGDDKRLSKELER + + T S S SFG LT+ GVRRTLVDLICTMNASFPD+DFSGVRPD F KE SVSLVRN+VNAALAEVSVIHNKIFLESFWADLDEVM LKDCEVY+YSPD EGDPFTEGCLWSFNHFFLNK LKRVLFLHCTTK
Sbjct: 36 KKAGDDKRLSKELERQLSASLPTPSRSSSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAFGTSPSFGVLTDVGVRRTLVDLICTMNASFPDYDFSGVRPDSFDKEASVSLVRNKVNAALAEVSVIHNKIFLESFWADLDEVMTLKDCEVYSYSPDMEGDPFTEGCLWSFNHFFLNKNLKRVLFLHCTTK 230
BLAST of mRNA_H-elongata_contig110556.874.1 vs. uniprot
Match: A0A7S2B0Q0_9STRA (Repressor of RNA polymerase III transcription n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B0Q0_9STRA) HSP 1 Score: 175 bits (444), Expect = 2.550e-52 Identity = 86/156 (55.13%), Postives = 112/156 (71.79%), Query Frame = 1
Query: 1 KKAGDDKRLSKELERHMKEKMSTSPASYGLSASKSFGELTEPGVRRTLVDLICTMNASFPDHDFSGVRPDHFQKEPSVSLVRNRVNAALAEVSVIHNKIFLESFWADLDEVMKLKDCEVYTYSPDNEGDPFTEGCLWSFNHFFLNKALKRVLFLHC 468
K+AG+DKRLSK LE+ ++++ SP + G S G L++ G RR L+DLI TMNASFPDHDFS VRP+ F KE VSLV + +N LAE+S +N FLE W ++EV+KLK+CE+Y+Y PD E DPF+EG LW+FN FF NK LKR+L+ C
Sbjct: 36 KRAGEDKRLSKMLEQQYVDELACSPTALG---SSPLGPLSDSGTRRLLIDLISTMNASFPDHDFSSVRPEQFLKEQHVSLVMSNINMHLAELSETYNSSFLEELWMSIEEVVKLKECEIYSYVPDMEEDPFSEGNLWTFNFFFFNKNLKRILYFTC 188
BLAST of mRNA_H-elongata_contig110556.874.1 vs. uniprot
Match: A0A7R9U9D7_9STRA (Repressor of RNA polymerase III transcription n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9D7_9STRA) HSP 1 Score: 162 bits (409), Expect = 5.090e-47 Identity = 81/167 (48.50%), Postives = 111/167 (66.47%), Query Frame = 1
Query: 1 KKAGDDKRLSKELERHMKEKMSTSPASYGLSASKSFGELTEPGVRRTLVDLICTMNASFPDHDFSGVRPDHFQKEPSVSLVRNRVNAALAEVSVIH--------NKIFLESFWADLDEVMKLKDCEVYTYSPDNEGDPFTEGCLWSFNHFFLNKALKRVLFLHCTTK 477
K+AGDDKRLS++L+R +K++++TSP S A G L+E R L+DLI TMNASFPD+DFS +RP+ F KE +S V N +N LA V K FL W ++++++L++CEVY Y PD +GDPF+EG LWSFN+FF NKALKR++F C +
Sbjct: 36 KRAGDDKRLSRKLDRQLKQELATSPKS---PAESPLGPLSESSTRNLLIDLIITMNASFPDYDFSSLRPEQFLKESHLSFVVNDINTHLAHVDEFRIEGLTSGTEKKFLVDVWRTVEDIIRLRECEVYRYIPDLDGDPFSEGTLWSFNYFFFNKALKRIIFFTCIAR 199
BLAST of mRNA_H-elongata_contig110556.874.1 vs. uniprot
Match: F0YN32_AURAN (Repressor of RNA polymerase III transcription n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN32_AURAN) HSP 1 Score: 152 bits (385), Expect = 1.390e-43 Identity = 75/159 (47.17%), Postives = 105/159 (66.04%), Query Frame = 1
Query: 1 KKAGDDKRLSKELERHMKEKMSTSPASYGLSASKSFGELTEPGVRRTLVDLICTMNASFPDHDFSGVRPDHFQKEPSVSLVRNRVNAALAEVSVIHNKIFLESFWADLDEVMKLKDCEVYTYSPDNEGDPFTEGCLWSFNHFFLNKALKRVLFLHCTTK 477
K+AGDDK+LSK+LE+ +++++SP S L + G L+ RR L+DLI TMNASFPDHDFS +RP+ F +E S V L+E+S L+ WA ++E + LKDCEV++Y PD + DPF+EG LWSFN+FF NK LKR+++ C +
Sbjct: 36 KRAGDDKKLSKQLEKQYADELTSSPGS--LDTTSPLGVLSASSTRRLLIDLISTMNASFPDHDFSALRPEQFCREASADFVARSCTRYLSEISD-QGFDLLQELWAAVEEAVSLKDCEVFSYVPDLDSDPFSEGALWSFNYFFFNKTLKRIVYFSCVAR 191
BLAST of mRNA_H-elongata_contig110556.874.1 vs. uniprot
Match: A0A8J2SMK1_9STRA (Repressor of RNA polymerase III transcription n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMK1_9STRA) HSP 1 Score: 152 bits (384), Expect = 2.400e-43 Identity = 76/165 (46.06%), Postives = 104/165 (63.03%), Query Frame = 1
Query: 1 KKAGDDKRLSKELERHMKEKMSTSPASYGLSASKSFGELTEPGVRRTLVDLICTMNASFPDHDFSGVRPDHFQKEPSVSLVRNRVNAALAEVSVIHN------KIFLESFWADLDEVMKLKDCEVYTYSPDNEGDPFTEGCLWSFNHFFLNKALKRVLFLHCTTK 477
K+AG+DK+L+KELE + SP+S + AS G L +P RR LVDLI T+NASFPDHDFS +RP+ F +E LAE++ FL+ WA ++E ++L++CEVY+Y PD E DPF+EG LWSFN+FF NK LKR+++L C +
Sbjct: 36 KRAGEDKKLAKELEAQFAAESRNSPSS--MEASSPLGALAQPATRRLLVDLIATLNASFPDHDFSNLRPEQFCREAGAQFAVRACARHLAELATAERFRAPGGGEFLDELWAAIEEAIQLRECEVYSYVPDGESDPFSEGALWSFNYFFFNKRLKRIVYLSCVAR 198
BLAST of mRNA_H-elongata_contig110556.874.1 vs. uniprot
Match: H3GX22_PHYRM (Repressor of RNA polymerase III transcription n=25 Tax=Peronosporaceae TaxID=4777 RepID=H3GX22_PHYRM) HSP 1 Score: 151 bits (381), Expect = 6.250e-43 Identity = 75/159 (47.17%), Postives = 102/159 (64.15%), Query Frame = 1
Query: 1 KKAGDDKRLSKELERHMKEKMSTSPASYGLSASKSFGELTEPGVRRTLVDLICTMNASFPDHDFSGVRPDHFQKEPSVSLVRNRVNAALAEVSVIHNKIFLESFWADLDEVMKLKDCEVYTYSPDNEGDPFTEGCLWSFNHFFLNKALKRVLFLHCTTK 477
KKAG DKRL+K LE + +++M A+ L S G L P R+ L++LI TMNASFPD+DFS V+P+ F+KEP + RVN LAE+ F+E W + E +KL +CEVY+Y PD + DPF++G LWSFN+FF NK K++L+ C K
Sbjct: 36 KKAGSDKRLAKSLELYYQQEME---AAADLLGSSPLGPLAAPATRKLLINLISTMNASFPDYDFSAVKPEQFRKEPDFRIALQRVNHDLAELLEAEGNGFVEKMWEGIAEAIKLDECEVYSYIPDMDADPFSDGNLWSFNYFFYNKVQKKILYFTCICK 191
BLAST of mRNA_H-elongata_contig110556.874.1 vs. uniprot
Match: A0A3F2RKD6_9STRA (Repressor of RNA polymerase III transcription n=15 Tax=Peronosporaceae TaxID=4777 RepID=A0A3F2RKD6_9STRA) HSP 1 Score: 149 bits (375), Expect = 5.160e-42 Identity = 72/159 (45.28%), Postives = 103/159 (64.78%), Query Frame = 1
Query: 1 KKAGDDKRLSKELERHMKEKMSTSPASYGLSASKSFGELTEPGVRRTLVDLICTMNASFPDHDFSGVRPDHFQKEPSVSLVRNRVNAALAEVSVIHNKIFLESFWADLDEVMKLKDCEVYTYSPDNEGDPFTEGCLWSFNHFFLNKALKRVLFLHCTTK 477
K+AG DKRL+K LE + ++++ S A L S G + P R+ L++LI TMNASFPD+DFS V+P+ F+KEP + +R+N LAE+ F+E W + E +KL +CEVY+Y PD + DPF++G LWSFN+FF NK K++L+ C K
Sbjct: 36 KRAGSDKRLAKSLELYYQQEIEASAAD--LLGSSPLGPIAAPATRKLLINLISTMNASFPDYDFSAVKPEQFRKEPDFRIALHRINHDLAEMLEAEGNGFVEKMWEAIAEAIKLDECEVYSYIPDMDSDPFSDGNLWSFNYFFYNKVQKKILYFTCICK 192
BLAST of mRNA_H-elongata_contig110556.874.1 vs. uniprot
Match: A0A5D6YCZ0_9STRA (Repressor of RNA polymerase III transcription n=2 Tax=Pythiaceae TaxID=4782 RepID=A0A5D6YCZ0_9STRA) HSP 1 Score: 147 bits (372), Expect = 1.770e-41 Identity = 72/162 (44.44%), Postives = 106/162 (65.43%), Query Frame = 1
Query: 1 KKAGDDKRLSKELERHMKEKMSTSPASYG---LSASKSFGELTEPGVRRTLVDLICTMNASFPDHDFSGVRPDHFQKEPSVSLVRNRVNAALAEVSVIHNKIFLESFWADLDEVMKLKDCEVYTYSPDNEGDPFTEGCLWSFNHFFLNKALKRVLFLHCTTK 477
KKAG DK+L+K LE + ++++ A+ L +S G L P R+ L++LI TMNASFPD+DFS V+P+ F+KEP L R+N LAE+ + F+E W + E +KL++CEVY+Y PD + DPF++G LWSFN+FF N+ K++L+ C +K
Sbjct: 36 KKAGSDKKLAKHLELYYQQELEALAAAKDAQELLSSSPLGPLAAPATRKLLINLISTMNASFPDYDFSAVKPEQFRKEPDYRLAIQRINHDLAELIDAESNGFVEKMWEAIAETIKLEECEVYSYIPDMDSDPFSDGTLWSFNYFFYNRNQKKILYFTCMSK 197
BLAST of mRNA_H-elongata_contig110556.874.1 vs. uniprot
Match: A0A6A4CZA8_9STRA (Repressor of RNA polymerase III transcription n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CZA8_9STRA) HSP 1 Score: 146 bits (369), Expect = 4.140e-41 Identity = 73/159 (45.91%), Postives = 99/159 (62.26%), Query Frame = 1
Query: 1 KKAGDDKRLSKELERHMKEKMSTSPASYGLSASKSFGELTEPGVRRTLVDLICTMNASFPDHDFSGVRPDHFQKEPSVSLVRNRVNAALAEVSVIHNKIFLESFWADLDEVMKLKDCEVYTYSPDNEGDPFTEGCLWSFNHFFLNKALKRVLFLHCTTK 477
KKAG DKRL+K LE ++++ A L S G + P R+ L+ LI TMNASFPD+DFS RP+ F+KEP + R+N LAE+ F+E W D+ + +KL DC+VY+Y PD + DPF++G LWSFN+FF NK K+VL+ C K
Sbjct: 36 KKAGSDKRLAKSLELLYQQEIEA--ADVQLLGSSPLGPIAAPATRKLLITLISTMNASFPDYDFSAARPEQFRKEPDFRIALQRINHDLAELLESEGGGFVEKMWEDIADAIKLDDCDVYSYIPDMDSDPFSDGNLWSFNYFFYNKVQKKVLYFTCLCK 192
BLAST of mRNA_H-elongata_contig110556.874.1 vs. uniprot
Match: A0A6G0R7A1_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0R7A1_9STRA) HSP 1 Score: 147 bits (370), Expect = 1.520e-40 Identity = 73/159 (45.91%), Postives = 100/159 (62.89%), Query Frame = 1
Query: 1 KKAGDDKRLSKELERHMKEKMSTSPASYGLSASKSFGELTEPGVRRTLVDLICTMNASFPDHDFSGVRPDHFQKEPSVSLVRNRVNAALAEVSVIHNKIFLESFWADLDEVMKLKDCEVYTYSPDNEGDPFTEGCLWSFNHFFLNKALKRVLFLHCTTK 477
KKAG DKRL+K LE ++++ + A L S G + P R+ L+ LI TMNASFPD+DFS RP+ F+KEP + R+N LAE+ F+E W D+ + +KL DC+VY+Y PD + DPF++G LWSFN+FF NK K+VL+ C K
Sbjct: 36 KKAGSDKRLAKSLELLYQQEIEAADAQ--LLGSSPLGPIAAPATRKLLITLISTMNASFPDYDFSAARPEQFRKEPDFRIALQRINHDLAELLESEGGGFVEKMWEDIADAIKLDDCDVYSYIPDMDSDPFSDGNLWSFNYFFYNKVQKKVLYFTCLCK 192 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110556.874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig110556.874.1 >prot_H-elongata_contig110556.874.1 ID=prot_H-elongata_contig110556.874.1|Name=mRNA_H-elongata_contig110556.874.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp KKAGDDKRLSKELERHMKEKMSTSPASYGLSASKSFGELTEPGVRRTLVDback to top mRNA from alignment at H-elongata_contig110556:804..2049- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig110556.874.1 ID=mRNA_H-elongata_contig110556.874.1|Name=mRNA_H-elongata_contig110556.874.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1246bp|location=Sequence derived from alignment at H-elongata_contig110556:804..2049- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig110556:804..2049- >mRNA_H-elongata_contig110556.874.1 ID=mRNA_H-elongata_contig110556.874.1|Name=mRNA_H-elongata_contig110556.874.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=966bp|location=Sequence derived from alignment at H-elongata_contig110556:804..2049- (Himanthalia elongata Himel1 dioecious)back to top |