prot_H-elongata_contig110311.851.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig110311.851.1
Unique Nameprot_H-elongata_contig110311.851.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length108
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110311.851.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 32..50
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..31
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 95..107
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 51..70
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..14
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 71..94
NoneNo IPR availableTMHMMTMhelixcoord: 71..93
NoneNo IPR availableTMHMMTMhelixcoord: 28..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110311contigH-elongata_contig110311:1695..2018 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110311.851.1mRNA_H-elongata_contig110311.851.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig110311 1695..2080 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig110311.851.1 ID=prot_H-elongata_contig110311.851.1|Name=mRNA_H-elongata_contig110311.851.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
PVPGRVSSTAAAALSPGPLASAVRDIPVVARGAVIAPLLVDLTALAAGAA
KRDAPGAFLGIVEVRDGRPEVRVGSLLTVAAVALSAASAASAFASLTSAP
LAPIDAR*
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