mRNA_H-elongata_contig110311.851.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110311.851.1
Unique NamemRNA_H-elongata_contig110311.851.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110311.851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110311contigH-elongata_contig110311:1695..2080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size387
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929630.0409875-CDS-H-elongata_contig110311:1694..20181622929630.0409875-CDS-H-elongata_contig110311:1694..2018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110311 1695..2018 +
1691679098.1403549-CDS-H-elongata_contig110311:1694..20181691679098.1403549-CDS-H-elongata_contig110311:1694..2018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110311 1695..2018 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929630.0566206-UTR-H-elongata_contig110311:2018..20801622929630.0566206-UTR-H-elongata_contig110311:2018..2080Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110311 2019..2080 +
1691679098.1476154-UTR-H-elongata_contig110311:2018..20801691679098.1476154-UTR-H-elongata_contig110311:2018..2080Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110311 2019..2080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110311.851.1prot_H-elongata_contig110311.851.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110311 1695..2018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110311.851.1

>prot_H-elongata_contig110311.851.1 ID=prot_H-elongata_contig110311.851.1|Name=mRNA_H-elongata_contig110311.851.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
PVPGRVSSTAAAALSPGPLASAVRDIPVVARGAVIAPLLVDLTALAAGAA
KRDAPGAFLGIVEVRDGRPEVRVGSLLTVAAVALSAASAASAFASLTSAP
LAPIDAR*
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mRNA from alignment at H-elongata_contig110311:1695..2080+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110311.851.1 ID=mRNA_H-elongata_contig110311.851.1|Name=mRNA_H-elongata_contig110311.851.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=386bp|location=Sequence derived from alignment at H-elongata_contig110311:1695..2080+ (Himanthalia elongata Himel1 dioecious)
CCCGTACCAGGGCGTGTGTCCTCAACGGCAGCGGCAGCACTTAGCCCTGG
GCCACTAGCTTCCGCCGTTCGCGACATCCCGGTAGTTGCCAGGGGCGCGG
TGATCGCTCCGCTGCTCGTCGATCTCACCGCCCTGGCGGCTGGCGCGGCC
AAGCGTGATGCTCCGGGAGCCTTTCTAGGAATCGTAGAGGTCCGAGACGG
GAGGCCAGAGGTTCGAGTCGGCAGCCTGTTGACCGTTGCTGCCGTGGCAT
TAAGCGCGGCCTCGGCCGCCTCTGCCTTTGCAAGTCTTACTTCCGCGCCG
CTTGCCCCGATCGACGCACGCTGATCTTGCCCTCGCCCACCGAAAAATGG
AGAGGATCCAGCGACCATCGAAACAGCGCTCGGCAC
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Coding sequence (CDS) from alignment at H-elongata_contig110311:1695..2080+

>mRNA_H-elongata_contig110311.851.1 ID=mRNA_H-elongata_contig110311.851.1|Name=mRNA_H-elongata_contig110311.851.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig110311:1695..2080+ (Himanthalia elongata Himel1 dioecious)
CCCGTACCAGGGCGTGTGTCCTCAACGGCAGCGGCAGCACTTAGCCCTGG
GCCACTAGCTTCCGCCGTTCGCGACATCCCGGTAGTTGCCAGGGGCGCGG
TGATCGCTCCGCTGCTCGTCGATCTCACCGCCCTGGCGGCTGGCGCGGCC
AAGCGTGATGCTCCGGGAGCCTTTCTAGGAATCGTAGAGGTCCGAGACGG
GAGGCCAGAGGTTCGAGTCGGCAGCCTGTTGACCGTTGCTGCCGTGGCAT
TAAGCGCGGCCTCGGCCGCCTCTGCCTTTGCAAGTCTTACTTCCGCGCCG
CTTGCCCCGATCGACGCACGCTGACCCGTACCAGGGCGTGTGTCCTCAAC
GGCAGCGGCAGCACTTAGCCCTGGGCCACTAGCTTCCGCCGTTCGCGACA
TCCCGGTAGTTGCCAGGGGCGCGGTGATCGCTCCGCTGCTCGTCGATCTC
ACCGCCCTGGCGGCTGGCGCGGCCAAGCGTGATGCTCCGGGAGCCTTTCT
AGGAATCGTAGAGGTCCGAGACGGGAGGCCAGAGGTTCGAGTCGGCAGCC
TGTTGACCGTTGCTGCCGTGGCATTAAGCGCGGCCTCGGCCGCCTCTGCC
TTTGCAAGTCTTACTTCCGCGCCGCTTGCCCCGATCGACGCACGCTGA
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