mRNA_H-elongata_contig109774.787.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109774.787.1
Unique NamemRNA_H-elongata_contig109774.787.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig109774.787.1 vs. uniprot
Match: A0A6H5JMW3_9PHAE (GTP_cyclohydro2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMW3_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 9.200e-22
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 QVFGSKRCDCKEQLDISLRYIQEKGGGAVIYLAQEGRGIGLANKVAAYALQ 153
            +V GSKRCDC+EQLD+SLRYIQE GGG VIYLAQEGRGIGLANKVAAYALQ
Sbjct:  186 EVLGSKRCDCREQLDMSLRYIQEHGGGVVIYLAQEGRGIGLANKVAAYALQ 236
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BLAST of mRNA_H-elongata_contig109774.787.1 vs. uniprot
Match: A0A7S2MR06_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MR06_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.440e-19
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 QVFGSKRCDCKEQLDISLRYIQEKGGGAVIYLAQEGRGIGLANKVAAYALQ 153
            +VFGS+RCDCKEQL+++L Y+QE GG AVIYL QEGRGIGLANKVAAYALQ
Sbjct:   16 EVFGSRRCDCKEQLNMALEYVQEHGG-AVIYLQQEGRGIGLANKVAAYALQ 65
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BLAST of mRNA_H-elongata_contig109774.787.1 vs. uniprot
Match: A0A835ZEW2_9STRA (GTP cyclohydrolase II-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEW2_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 7.690e-18
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 QVFGSKRCDCKEQLDISLRYIQEKGGGAVIYLAQEGRGIGLANKVAAYALQ 153
            +V GS+RCDCKEQLD +LR+IQE GG AVIYL QEGRGIGLANKVAAYALQ
Sbjct:  136 EVLGSRRCDCKEQLDAALRHIQEHGG-AVIYLQQEGRGIGLANKVAAYALQ 185
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BLAST of mRNA_H-elongata_contig109774.787.1 vs. uniprot
Match: A0A0G4G8S0_9ALVE (GTP cyclohydrolase II n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G8S0_9ALVE)

HSP 1 Score: 82.8 bits (203), Expect = 3.120e-17
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 QVFGSKRCDCKEQLDISLRYIQEKGGGAVIYLAQEGRGIGLANKVAAYALQ 153
            +VFGS+RCDCKEQLD++L ++Q K GGAV+YL QEGRGIGLANK+AAYALQ
Sbjct:  246 EVFGSRRCDCKEQLDLALDFVQ-KDGGAVVYLQQEGRGIGLANKIAAYALQ 295
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BLAST of mRNA_H-elongata_contig109774.787.1 vs. uniprot
Match: A0A7S3V7I7_9STRA (GTP cyclohydrolase II n=4 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7I7_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.750e-17
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 QVFGSKRCDCKEQLDISLRYIQEKGGGAVIYLAQEGRGIGLANKVAAYALQ 153
            +VFGSKRCDCKEQL ++L Y+ E GG AVIYL QEGRGIGLANKVAAYALQ
Sbjct:  164 EVFGSKRCDCKEQLKMALEYVDEHGG-AVIYLQQEGRGIGLANKVAAYALQ 213
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BLAST of mRNA_H-elongata_contig109774.787.1 vs. uniprot
Match: A0A7S1G170_9STRA (GTP cyclohydrolase II n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G170_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 7.940e-17
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 QVFGSKRCDCKEQLDISLRYIQEKGGGAVIYLAQEGRGIGLANKVAAYALQ 153
            +VFGS RCDCKEQL++S +YIQE GG  VIYL QEGRGIGLANKVAAYALQ
Sbjct:  258 EVFGSLRCDCKEQLEMSFKYIQENGG-LVIYLQQEGRGIGLANKVAAYALQ 307
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BLAST of mRNA_H-elongata_contig109774.787.1 vs. uniprot
Match: A0A7S4RWR3_9STRA (GTP cyclohydrolase II n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RWR3_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.460e-16
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 QVFGSKRCDCKEQLDISLRYIQEKGGGAVIYLAQEGRGIGLANKVAAYALQ 153
            +VF S+RCDCKEQL +SL YIQ K GGA+IYL QEGRGIGLANKVAAYALQ
Sbjct:  162 EVFRSQRCDCKEQLKMSLEYIQ-KNGGAIIYLQQEGRGIGLANKVAAYALQ 211
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BLAST of mRNA_H-elongata_contig109774.787.1 vs. uniprot
Match: A0A7S4VFR0_9STRA (GTP cyclohydrolase II n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VFR0_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.480e-16
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 QVFGSKRCDCKEQLDISLRYIQEKGGGAVIYLAQEGRGIGLANKVAAYALQ 153
            +VF S+RCDCKEQL +SL YIQ K GGA+IYL QEGRGIGLANKVAAYALQ
Sbjct:  162 EVFRSQRCDCKEQLKMSLEYIQ-KNGGAIIYLQQEGRGIGLANKVAAYALQ 211
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BLAST of mRNA_H-elongata_contig109774.787.1 vs. uniprot
Match: B7FTK6_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FTK6_PHATC)

HSP 1 Score: 76.6 bits (187), Expect = 1.750e-16
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 QVFGSKRCDCKEQLDISLRYIQEKGGGAVIYLAQEGRGIGLANKVAAYALQ 153
            +VF S+RCDCKEQL ++L YIQ K GG +IYL QEGRGIGLANKVAAYALQ
Sbjct:   14 EVFRSQRCDCKEQLHMALLYIQ-KHGGCIIYLQQEGRGIGLANKVAAYALQ 63
[Close]
BLAST of mRNA_H-elongata_contig109774.787.1 vs. uniprot
Match: A0A836CJG3_9STRA (GTP cyclohydrolase II-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJG3_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.950e-16
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 QVFGSKRCDCKEQLDISLRYIQEKGGGAVIYLAQEGRGIGLANKVAAYALQ 153
            +V GS+RCDC+EQLD SL++IQ  GG AVIYL QEGRGIGLANKVAAYALQ
Sbjct:  127 EVLGSQRCDCREQLDASLKHIQAHGG-AVIYLQQEGRGIGLANKVAAYALQ 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109774.787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMW3_9PHAE9.200e-2288.24GTP_cyclohydro2 domain-containing protein n=2 Tax=... [more]
A0A7S2MR06_9STRA1.440e-1980.39Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A835ZEW2_9STRA7.690e-1882.35GTP cyclohydrolase II-domain-containing protein n=... [more]
A0A0G4G8S0_9ALVE3.120e-1776.47GTP cyclohydrolase II n=1 Tax=Chromera velia CCMP2... [more]
A0A7S3V7I7_9STRA5.750e-1780.39GTP cyclohydrolase II n=4 Tax=Chaetoceros debilis ... [more]
A0A7S1G170_9STRA7.940e-1780.39GTP cyclohydrolase II n=1 Tax=Corethron hystrix Ta... [more]
A0A7S4RWR3_9STRA1.460e-1680.39GTP cyclohydrolase II n=2 Tax=Ditylum brightwellii... [more]
A0A7S4VFR0_9STRA1.480e-1680.39GTP cyclohydrolase II n=3 Tax=Ditylum brightwellii... [more]
B7FTK6_PHATC1.750e-1676.47Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A836CJG3_9STRA1.950e-1678.43GTP cyclohydrolase II-domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109774contigH-elongata_contig109774:288..440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue5.8e-18
Seed eggNOG ortholog2880.D8LTI2
Preferred nameRIB1
KEGG rclassRC00293,RC02504
KEGG koko:K01497
KEGG ReactionR00425
KEGG Pathwayko00740,ko00790,ko01100,ko01110,ko02024,map00740,map00790,map01100,map01110,map02024
KEGG ModuleM00125
GOsGO:0003674,GO:0003824,GO:0003933,GO:0003935,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017144,GO:0018130,GO:0019238,GO:0034641,GO:0042364,GO:0042726,GO:0042727,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.3,4-dihydroxy-2-butanone-4-phosphate synthase activity
EggNOG OGsCOG0807@1,KOG1284@2759
EC3.5.4.25
COG Functional cat.H
BiGG ReactioniRC1080.CRv4_Au5_s9_g15352_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionGTP cyclohydrolase II, RibA
Ec32 orthologEc-02_005710.1
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929624.1514843-CDS-H-elongata_contig109774:287..4401622929624.1514843-CDS-H-elongata_contig109774:287..440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109774 288..440 -
1691679095.8650975-CDS-H-elongata_contig109774:287..4401691679095.8650975-CDS-H-elongata_contig109774:287..440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109774 288..440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109774.787.1prot_H-elongata_contig109774.787.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109774 288..440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109774.787.1

>prot_H-elongata_contig109774.787.1 ID=prot_H-elongata_contig109774.787.1|Name=mRNA_H-elongata_contig109774.787.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
QVFGSKRCDCKEQLDISLRYIQEKGGGAVIYLAQEGRGIGLANKVAAYAL
Q
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mRNA from alignment at H-elongata_contig109774:288..440-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109774.787.1 ID=mRNA_H-elongata_contig109774.787.1|Name=mRNA_H-elongata_contig109774.787.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig109774:288..440- (Himanthalia elongata Himel1 dioecious)
CAGGTATTCGGCTCAAAGAGATGCGACTGCAAGGAGCAGCTGGATATCTC
TCTGCGATACATTCAGGAGAAAGGTGGGGGCGCCGTCATTTATCTCGCCC
AGGAGGGCCGAGGGATCGGTCTTGCCAACAAGGTCGCCGCTTACGCTCTC
CAG
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Coding sequence (CDS) from alignment at H-elongata_contig109774:288..440-

>mRNA_H-elongata_contig109774.787.1 ID=mRNA_H-elongata_contig109774.787.1|Name=mRNA_H-elongata_contig109774.787.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig109774:288..440- (Himanthalia elongata Himel1 dioecious)
CAGGTATTCGGCTCAAAGAGATGCGACTGCAAGGAGCAGCTGGATATCTC
TCTGCGATACATTCAGGAGAAAGGTGGGGGCGCCGTCATTTATCTCGCCC
AGGAGGGCCGAGGGATCGGTCTTGCCAACAAGGTCGCCGCTTACGCTCTC
CAGCAGGTATTCGGCTCAAAGAGATGCGACTGCAAGGAGCAGCTGGATAT
CTCTCTGCGATACATTCAGGAGAAAGGTGGGGGCGCCGTCATTTATCTCG
CCCAGGAGGGCCGAGGGATCGGTCTTGCCAACAAGGTCGCCGCTTACGCT
CTCCAG
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