mRNA_H-elongata_contig109298.754.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109298.754.1
Unique NamemRNA_H-elongata_contig109298.754.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig109298.754.1 vs. uniprot
Match: D7FHI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI4_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 2.640e-33
Identity = 66/100 (66.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:    1 ILTFHQAWKEGGKGGTDIGFGASVYPAAYVLAEYLERHPHLVRGKRVIELGGVSNKPTRRVLI--FSGHILS-SGASEVCLTDGDNQSLRLAQGNVEANI 291
            +L   QAWK  GKGGTDIGFGASVYPAAYVLAEYLERHP+LVRGKRVIELGG    P R  L      H ++  GA+EVCLTDGD +SL+L Q NV  N+
Sbjct:   29 LLKIQQAWKGDGKGGTDIGFGASVYPAAYVLAEYLERHPYLVRGKRVIELGGCCAIPARAALFAALQYHCMTFKGAAEVCLTDGDEESLKLTQRNVTDNL 128          
BLAST of mRNA_H-elongata_contig109298.754.1 vs. uniprot
Match: A0A6H5KX94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX94_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 3.320e-30
Identity = 63/98 (64.29%), Postives = 72/98 (73.47%), Query Frame = 1
Query:    1 ILTFHQAWKEGGKGGTDIGFGASVYPAAYVLAEYLERHPHLVRGKRVIELGGVSNKPTRRVLIFSGHILSS-GASEVCLTDGDNQSLRLAQGNVEANI 291
            +L   QAWK  GKGGTDIGFGASVYPAAYVLAEYLERHP+LVRGKRVIELG  +         F G   ++ GA+EVCLTDGD +SL+L Q NV  N+
Sbjct:   29 LLKIQQAWKGDGKGGTDIGFGASVYPAAYVLAEYLERHPYLVRGKRVIELGTGTG--------FLGIAAATLGAAEVCLTDGDEESLKLTQRNVTGNL 118          
BLAST of mRNA_H-elongata_contig109298.754.1 vs. uniprot
Match: A0A8K1C253_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C253_PYTOL)

HSP 1 Score: 78.6 bits (192), Expect = 1.510e-15
Identity = 46/95 (48.42%), Postives = 55/95 (57.89%), Query Frame = 1
Query:    4 LTFHQAWKEGGKGGTDIGFGASVYPAAYVLAEYLERHPHLVRGKRVIELGGVSNKPTRRVLIFSGHILSSGASEVCLTDGDNQSLRLAQGNVEAN 288
            +   Q WK  GKGGT +GFGASVY AA  L+ YLE H  LVR KRVIELG         V I + H+    A +V +TDGD  S+ L   N+E N
Sbjct:   56 IMIRQGWKNDGKGGTTLGFGASVYDAAIALSLYLEAHCDLVRNKRVIELGCGPGL----VGIVAAHLQ---ADQVVVTDGDPASVHLTAANIELN 143          
BLAST of mRNA_H-elongata_contig109298.754.1 vs. uniprot
Match: A0A5D6Y5E6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5E6_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.860e-15
Identity = 48/94 (51.06%), Postives = 60/94 (63.83%), Query Frame = 1
Query:   16 QAWKEGGKGGTDIGFGASVYPAAYVLAEYLERHPHLVRGKRVIELG---GVSNKPTRRVLIFSGHILSSGASEVCLTDGDNQSLRLAQGNVEAN 288
            Q W+  G+GGT +GFGASVY A+  LA +LE H H VRG+RVIELG   G++        I +G +   GAS V LTDGD  S+ LA+ NVE N
Sbjct:  692 QGWRADGRGGTRLGFGASVYDASVALALFLESHDHHVRGRRVIELGCGPGLAG-------IAAGVL---GASSVLLTDGDAGSVELAKRNVELN 775          
BLAST of mRNA_H-elongata_contig109298.754.1 vs. uniprot
Match: W2NJ79_PHYPR (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=W2NJ79_PHYPR)

HSP 1 Score: 77.4 bits (189), Expect = 4.370e-15
Identity = 42/95 (44.21%), Postives = 56/95 (58.95%), Query Frame = 1
Query:    4 LTFHQAWKEGGKGGTDIGFGASVYPAAYVLAEYLERHPHLVRGKRVIELGGVSNKPTRRVLIFSGHILSSGASEVCLTDGDNQSLRLAQGNVEAN 288
            +   QAW+  G+GGT +GFGASVY AA  L+ YL  HP LV+GKRV+ELG         V + + H+       + +TDGD  S+ L Q N+E N
Sbjct:   59 IRIDQAWQSDGRGGTTLGFGASVYDAAIALSLYLAAHPDLVKGKRVVELGCGPGL----VGVVAAHLQPKS---IVVTDGDPASVALTQHNIEVN 146          
BLAST of mRNA_H-elongata_contig109298.754.1 vs. uniprot
Match: M4B6W0_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6W0_HYAAE)

HSP 1 Score: 77.0 bits (188), Expect = 5.160e-15
Identity = 42/95 (44.21%), Postives = 56/95 (58.95%), Query Frame = 1
Query:    4 LTFHQAWKEGGKGGTDIGFGASVYPAAYVLAEYLERHPHLVRGKRVIELGGVSNKPTRRVLIFSGHILSSGASEVCLTDGDNQSLRLAQGNVEAN 288
            +   QAW+  G+GGT +GFGASVY AA  L+ YL  H  LV GKR+IELGG        V + + H+   G   + +TDGD  S+ L + N+E N
Sbjct:   44 IRIDQAWQNDGRGGTALGFGASVYDAAIALSLYLASHRDLVEGKRIIELGGGPGL----VGVVAAHLKPKG---IVITDGDPASVALTRRNIELN 131          
BLAST of mRNA_H-elongata_contig109298.754.1 vs. uniprot
Match: A0A329SNI9_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SNI9_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 8.980e-15
Identity = 42/95 (44.21%), Postives = 56/95 (58.95%), Query Frame = 1
Query:    4 LTFHQAWKEGGKGGTDIGFGASVYPAAYVLAEYLERHPHLVRGKRVIELGGVSNKPTRRVLIFSGHILSSGASEVCLTDGDNQSLRLAQGNVEAN 288
            +   QAW+  G+GGT +GFGASVY AA  L+ YL  HP LV+G RVIELG         V + +GH+       + +TDGD  S+ L Q N++ N
Sbjct:   62 IRIDQAWQSDGRGGTALGFGASVYDAAIALSLYLAAHPDLVKGNRVIELGCGPGL----VGVVAGHL---EPKSIVITDGDPASVALTQRNIKVN 149          
BLAST of mRNA_H-elongata_contig109298.754.1 vs. uniprot
Match: A0A833WCW8_PHYIN (Lysine methyltransferase n=3 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WCW8_PHYIN)

HSP 1 Score: 76.6 bits (187), Expect = 9.100e-15
Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    4 LTFHQAWKEGGKGGTDIGFGASVYPAAYVLAEYLERHPHLVRGKRVIELGGVSNKPTRRVLIFSGHILSSGASEVCLTDGDNQSLRLAQGNVEAN 288
            +   QAW+  G+GGT +GFGASVY AA  L+ YL  HP L++G RVIELG         V + + H+       + +TDGD+ S+ L Q N++AN
Sbjct:   64 IRIDQAWQSDGRGGTSLGFGASVYDAAIALSLYLASHPDLIKGGRVIELGCGPGL----VGVVAAHL---EPKSIVITDGDSASVALTQRNIKAN 151          
BLAST of mRNA_H-elongata_contig109298.754.1 vs. uniprot
Match: A0A484DR85_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DR85_BRELC)

HSP 1 Score: 76.3 bits (186), Expect = 1.270e-14
Identity = 43/95 (45.26%), Postives = 55/95 (57.89%), Query Frame = 1
Query:    4 LTFHQAWKEGGKGGTDIGFGASVYPAAYVLAEYLERHPHLVRGKRVIELGGVSNKPTRRVLIFSGHILSSGASEVCLTDGDNQSLRLAQGNVEAN 288
            +   QAW+  G+GGT +GFGASVY AA  L+ Y+  HPHLV+GKRVIELG         V I + H        V +TDGD  S+ L + N+  N
Sbjct:   56 IRIDQAWQSDGRGGTALGFGASVYDAAIALSLYIADHPHLVKGKRVIELGCGPGL----VGIVAAHF---EPKHVVITDGDPASVALTRHNIRLN 143          
BLAST of mRNA_H-elongata_contig109298.754.1 vs. uniprot
Match: A0A2D4CGG4_PYTIN (Uncharacterized protein (Fragment) n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CGG4_PYTIN)

HSP 1 Score: 75.5 bits (184), Expect = 1.350e-14
Identity = 44/95 (46.32%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    4 LTFHQAWKEGGKGGTDIGFGASVYPAAYVLAEYLERHPHLVRGKRVIELGGVSNKPTRRVLIFSGHILSSGASEVCLTDGDNQSLRLAQGNVEAN 288
            +   QAW+  GKGGT IGFGASVY AA  L+ +L+ H  LV+GKRVIELG         V I + H+    A+ V +TDGD+ S+ L   N+  N
Sbjct:   48 ILIQQAWQPDGKGGTAIGFGASVYDAAIALSLFLDSHRDLVQGKRVIELGCGPGL----VGIVAAHL---NAASVLVTDGDDASVALTATNISRN 135          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109298.754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHI4_ECTSI2.640e-3366.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX94_9PHAE3.320e-3064.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8K1C253_PYTOL1.510e-1548.42Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6Y5E6_9STRA1.860e-1551.06Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
W2NJ79_PHYPR4.370e-1544.21Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
M4B6W0_HYAAE5.160e-1544.21Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A329SNI9_9STRA8.980e-1544.21Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A833WCW8_PHYIN9.100e-1543.16Lysine methyltransferase n=3 Tax=Phytophthora infe... [more]
A0A484DR85_BRELC1.270e-1445.26Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A2D4CGG4_PYTIN1.350e-1446.32Uncharacterized protein (Fragment) n=2 Tax=Pythium... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109298contigH-elongata_contig109298:189..1625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue3.3e-14
Seed eggNOG ortholog42099.EPrPV00000017613
KEGG koko:K21804
EggNOG free text desc.Lysine methyltransferase
EggNOG OGs1MI6N@121069,KOG2497@1,KOG2497@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03110
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929620.4155338-CDS-H-elongata_contig109298:188..3011622929620.4155338-CDS-H-elongata_contig109298:188..301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109298 189..301 -
1691679094.1477787-CDS-H-elongata_contig109298:188..3011691679094.1477787-CDS-H-elongata_contig109298:188..301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109298 189..301 -
1622929620.4301848-CDS-H-elongata_contig109298:1447..16251622929620.4301848-CDS-H-elongata_contig109298:1447..1625Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109298 1448..1625 -
1691679094.1592205-CDS-H-elongata_contig109298:1447..16251691679094.1592205-CDS-H-elongata_contig109298:1447..1625Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109298 1448..1625 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109298.754.1prot_H-elongata_contig109298.754.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109298 189..1625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109298.754.1

>prot_H-elongata_contig109298.754.1 ID=prot_H-elongata_contig109298.754.1|Name=mRNA_H-elongata_contig109298.754.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
ILTFHQAWKEGGKGGTDIGFGASVYPAAYVLAEYLERHPHLVRGKRVIEL
GGVSNKPTRRVLIFSGHILSSGASEVCLTDGDNQSLRLAQGNVEANI
back to top

mRNA from alignment at H-elongata_contig109298:189..1625-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109298.754.1 ID=mRNA_H-elongata_contig109298.754.1|Name=mRNA_H-elongata_contig109298.754.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1437bp|location=Sequence derived from alignment at H-elongata_contig109298:189..1625- (Himanthalia elongata Himel1 dioecious)
ATTCTCACGTTTCACCAGGCGTGGAAGGAAGGAGGGAAGGGAGGCACGGA TATCGGCTTCGGCGCGAGCGTTTACCCGGCGGCGTACGTCCTGGCGGAGT ATCTCGAGCGCCACCCGCACCTCGTTCGAGGGAAAAGGGTAATCGAGCTA GGTGGGGTTTCCAACAAGCCAACGCGGCGTGACGCACCTGAAAACAGAAA AGACGCCGCGCCGAACCCTGCCTCATTCTTCTCGTGTTGGACGGCCCTTT CTTTCTGCCTTTTTTTCGCCTCGCCTTGCCCGAAAAATAAAGAAATAATT CAAAGACGCAGCGCGGTTGTCCCGTTGACTAGCGACCGTTCCAACTTAAT GTCCGTAACTGGAAGAGATCACAGATGCTCGTGCTAGGTCAAAAGACCGG CGAGGTCGAACACTTACCTCACCTTCCTCGAGAACAGCAGTAGGGATAAT AAAGGACACATGATTTGTTGTGTAGAAGGTTGGTCGTAATTATCTCTGCG ATGAGTCTGATGCAGTAGTTCGCGCGGTTCTTCAGCCGGATGCTCCACAC TTCCGCTCGCGCACACCCTCGCCTTCGCCGCGGGAAGTGGCGGCTGAAAA GGTGGCCTTCCATAATTTGGAGTCCTCCAATATGCCGATCAGTCAGTCAC TCGCAATATTCGAAGGATTGCCTTGCGTTACAAAGCCAAGGAGCCTCCCC GACCCCACCCGTGCTTCCCAAAAACGTTGTTAGATGGCGTGACTCAAGAC AGGATATCCTGTGCTGTAACCCCGCCCTCCCCTCTCTCTGCTTCAACCTG ACTGAACACGCTTTTCTCTGCTGTAACCCCGCCCTCCTCTCTCTCTGCTT CAACCTGACTGTCGTTTTTTCTCCTCGAAGGTACAGGGACAGGCTTTCTG GGCATCGCTGCCGGTGTCCTGGGTGAGCTCTCCAACACTCGATTCGACAC GCACGTTCCTTCATTTTTTTAATTTGTTTTTTTTGGGGCGGTGTACTAGG TTTTCCCTTCTGATCGTGCTCTGCTGTTGACTCCTACTGGCCTTGCTTTC TGGACGCGACGTGACGTGTTGTTTCTTCTCTTCTCGTGTTATCGGGCGCG CGAAAAACAATTAACCGCACGGGTTGTGGCAAGTCGCTCTTCTCCCGCCA CAGATGTCTTGTCGGTGTAGTTTCCGCAGCATGCTGAGATCTATACAGCT CTGTACGTGAGGTGAAAAAACAGGCGTGGCCTATTCCTCACTACAAAACT GCTGTATTTTACCGAAAGGCACCGATCAATACCTCAATCGAAGCGGTACG ATCCGTCGTCCTTTACATGCAAAGGTGTGCTGATTTTCTCCGGTCACATC CTTTCCTCAGGAGCTTCCGAAGTTTGCTTGACCGACGGGGACAACCAGAG CCTGCGACTGGCGCAGGGCAACGTCGAGGCGAACATT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig109298:189..1625-

>mRNA_H-elongata_contig109298.754.1 ID=mRNA_H-elongata_contig109298.754.1|Name=mRNA_H-elongata_contig109298.754.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig109298:189..1625- (Himanthalia elongata Himel1 dioecious)
ATTCTCACGTTTCACCAGGCGTGGAAGGAAGGAGGGAAGGGAGGCACGGA
TATCGGCTTCGGCGCGAGCGTTTACCCGGCGGCGTACGTCCTGGCGGAGT
ATCTCGAGCGCCACCCGCACCTCGTTCGAGGGAAAAGGGTAATCGAGCTA
GGTGGGGTTTCCAACAAGCCAACGCGGCATTCTCACGTTTCACCAGGCGT
GGAAGGAAGGAGGGAAGGGAGGCACGGATATCGGCTTCGGCGCGAGCGTT
TACCCGGCGGCGTACGTCCTGGCGGAGTATCTCGAGCGCCACCCGCACCT
CGTTCGAGGGAAAAGGGTAATCGAGCTAGGTGGGGTTTCCAACAAGCCAA
CGCGGCGTGTGCTGATTTTCTCCGGTCACATCCTTTCCTCAGGAGCTTCC
GAAGTTTGCTTGACCGACGGGGACAACCAGAGCCTGCGACTGGCGCAGGG
CAACGTCGAGGCGAACATTGTGTGCTGATTTTCTCCGGTCACATCCTTTC
CTCAGGAGCTTCCGAAGTTTGCTTGACCGACGGGGACAACCAGAGCCTGC
GACTGGCGCAGGGCAACGTCGAGGCGAACATT
back to top