prot_H-elongata_contig10903.729.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig10903.729.1
Unique Nameprot_H-elongata_contig10903.729.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length344
Homology
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 6.120e-27
Identity = 77/200 (38.50%), Postives = 105/200 (52.50%), Query Frame = 0
Query:    1 MKQSSLGGNSYVVIFVNDCTRFKVVKFVTRKSDSSAAVLSLIADYINPQKLSIKFVP-TDNGGKFEGEFQRKLDLRSITHELTPPDTPQYNEVAERALGLLREKEIALMEQLDNII-NVPRET-LWAQAMLFTCDVTNKPVTTSTDGVKSPYELWFGNIPTAGHLQPFGAMGYARRSVRENKMVPKRKKCVFMGIPCNFP 197
            M+  S+GGN Y +I  +DCTR+  V F+  KSD++AA    +ADY         FV  TD GG+F+G+F        I  E TPP+TP+YN VAERALGLL +  +A   Q   +  + P    LWA+A+   C   N   TT   G KSP EL+ G  P  G   PF       +S R+ +  P+ +K   +G+P   P
Sbjct:  205 MQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPEELFHGTPPPVGSTHPF-LKPLVFKSRRKARSQPRARKDGTLGLPTITP 403          
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.630e-26
Identity = 106/364 (29.12%), Postives = 156/364 (42.86%), Query Frame = 0
Query:    1 MKQSSLGGNSYVVIFVNDCTRFKVVKFVTRKSDSSAAVLSLIADYINPQKLSIKFVP-TDNGGKFEGEFQRKLDLRSITHELTPPDTPQYNEVAERALGLLREKEIALMEQLDNII-NVPRET-LWAQAMLFTCDVTNKPVTTSTDGVKSPYELWFGNIPTAGHLQPF--GAMGYARRSVRENKMVPKRKKCVFMGIPCNFPTG-------SISVTRQIV--ERQTVEW-------IDGPEKTGGHDTSSDDRDMKSTGGETILGRETPQLNVQELGQEQQXXXXXXXXXXXXXXXXXXXXXXXVGQNDKVEKYKYRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAVAKDGELRHFDAK 343
            MK  S+GGN Y +I  +D +R+  V F+  KSD++      +ADY         F+   D GG+F+G+F        I  E TPP TP+YN VAERALGL+ +  +A   Q   +  + P    LWA+A+   C   N   T S +G KS YE++  +    G   PF   AM   RR  +     PK +K  ++G   N P         ++ +T + V   +  V W       IDG +KTG                            V+EL +                           G+   V+  K R+VA+GF Q+ G+ +    +  PS ASI+ ++A A  K  +L H+D K
Sbjct:  711 MKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTNGVPCEDFIARADGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHNSPSPVGSTYPFLKPAMFKLRRKAKSQ---PKGEKGWYLGPAHNHPRDCKPSDVEAVPMTYKDVMCSKYEVFWEAAMKTEIDGHDKTGTF------------------------TKVKELPE---------------------------GRKAIVDS-KARMVARGFSQIPGIDFHHSSAACPSAASIKTVIAVATEKGKKLAHWDVK 1019          
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.020e-25
Identity = 78/224 (34.82%), Postives = 114/224 (50.89%), Query Frame = 0
Query:    5 SLGGNSYVVIFVNDCTRFKVVKFVTRKSDSSAAVLSLIADY-INPQKLSIKFVPTDNGGKF-EGEFQRKLDLRSITHELTPPDTPQYNEVAERALGLLREKEIALMEQLDNII----NVPRETLWAQAMLFTCDVTNKPVTTSTDGVKSPYELWFGNIPTAGHLQPFGAMGYARRSVRENKMVPKRKKCVFMGIPCNFPTGSISVT---RQIVERQTVEWIDGP 219
            SLGG  Y +I  +D TR+  V F+  KSD++ A    +A+   N     +  V +DNGG+F EGEF R      I  E TP  +P+YN VAERALGL+++  +A   Q   +     N P  +LWA+A+ ++C+  N   TTS    KSPYE+W G+ P  G   PF       +  R +K  PK +KC ++G   N     + +    R+ +  +   W   P
Sbjct:  748 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTRNFTWQSVP 968          
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.030e-25
Identity = 78/224 (34.82%), Postives = 114/224 (50.89%), Query Frame = 0
Query:    5 SLGGNSYVVIFVNDCTRFKVVKFVTRKSDSSAAVLSLIADY-INPQKLSIKFVPTDNGGKF-EGEFQRKLDLRSITHELTPPDTPQYNEVAERALGLLREKEIALMEQLDNII----NVPRETLWAQAMLFTCDVTNKPVTTSTDGVKSPYELWFGNIPTAGHLQPFGAMGYARRSVRENKMVPKRKKCVFMGIPCNFPTGSISVT---RQIVERQTVEWIDGP 219
            SLGG  Y +I  +D TR+  V F+  KSD++ A    +A+   N     +  V +DNGG+F EGEF R      I  E TP  +P+YN VAERALGL+++  +A   Q   +     N P  +LWA+A+ ++C+  N   TTS    KSPYE+W G+ P  G   PF       +  R +K  PK +KC ++G   N     + +    R+ +  +   W   P
Sbjct:  583 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTRNFTWQSVP 803          
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.040e-25
Identity = 78/224 (34.82%), Postives = 114/224 (50.89%), Query Frame = 0
Query:    5 SLGGNSYVVIFVNDCTRFKVVKFVTRKSDSSAAVLSLIADY-INPQKLSIKFVPTDNGGKF-EGEFQRKLDLRSITHELTPPDTPQYNEVAERALGLLREKEIALMEQLDNII----NVPRETLWAQAMLFTCDVTNKPVTTSTDGVKSPYELWFGNIPTAGHLQPFGAMGYARRSVRENKMVPKRKKCVFMGIPCNFPTGSISVT---RQIVERQTVEWIDGP 219
            SLGG  Y +I  +D TR+  V F+  KSD++ A    +A+   N     +  V +DNGG+F EGEF R      I  E TP  +P+YN VAERALGL+++  +A   Q   +     N P  +LWA+A+ ++C+  N   TTS    KSPYE+W G+ P  G   PF       +  R +K  PK +KC ++G   N     + +    R+ +  +   W   P
Sbjct:  596 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTRNFTWQSVP 816          
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.050e-25
Identity = 78/224 (34.82%), Postives = 114/224 (50.89%), Query Frame = 0
Query:    5 SLGGNSYVVIFVNDCTRFKVVKFVTRKSDSSAAVLSLIADY-INPQKLSIKFVPTDNGGKF-EGEFQRKLDLRSITHELTPPDTPQYNEVAERALGLLREKEIALMEQLDNII----NVPRETLWAQAMLFTCDVTNKPVTTSTDGVKSPYELWFGNIPTAGHLQPFGAMGYARRSVRENKMVPKRKKCVFMGIPCNFPTGSISVT---RQIVERQTVEWIDGP 219
            SLGG  Y +I  +D TR+  V F+  KSD++ A    +A+   N     +  V +DNGG+F EGEF R      I  E TP  +P+YN VAERALGL+++  +A   Q   +     N P  +LWA+A+ ++C+  N   TTS    KSPYE+W G+ P  G   PF       +  R +K  PK +KC ++G   N     + +    R+ +  +   W   P
Sbjct:  739 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNDKRRAITTRNFTWQSVP 959          
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 7.890e-25
Identity = 74/213 (34.74%), Postives = 108/213 (50.70%), Query Frame = 0
Query:    1 MKQSSLGGNSYVVIFVNDCTRFKVVKFVTRKSDSSAAVLSLIADY-INPQKLSIKFVPTDNGGKFEGEFQRKLDLRSITHELTPPDTPQYNEVAERALGLLREKEIALMEQLDNII-NVPRET-LWAQAMLFTCDVTNKPVTTSTDGVKSPYELWFGNIPTAGHLQPFGAMGYARRSVRENKMVPKRKKCVFMGIPCNFPTGSISVTRQIVER 210
            MK  S+GGN Y +I  +D +R+  V F+  KSD++      +ADY        +    TD GG+F+G+F        I  E TPP TP+YN VAERALGL+ +  +A   Q   +  + P    LWA+A+   C   N   T S +G KS YE++  + P  G   PF       +S R+ K  PK +K  ++G   N P   +S+T  I ++
Sbjct:   32 MKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPF-LKPAVFKSRRKAKSQPKGEKGWYLGPAHNHPRECLSMTSPIGQK 243          
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 6.360e-24
Identity = 75/225 (33.33%), Postives = 112/225 (49.78%), Query Frame = 0
Query:    2 KQSSLGGNSYVVIFVNDCTRFKVVKFVTRKSDSSAAVLSLIADY-INPQKLSIKFVPTDNGGKF-EGEFQRKLDLRSITHELTPPDTPQYNEVAERALGLLREKEIALMEQLDNII-NVPR-ETLWAQAMLFTCDVTNKPVTTSTDGVKSPYELWFGNIPTAGHLQPFGAMGYARRSVRENKMVPKRKKCVFMGIPCNFPTGSISVT---RQIVERQTVEWIDGP 219
            +  SLGG  Y +I  +D TR+  V F+  KSD++ A    + +   +     +  V +DNGG+F EGEF R      I  E TP  +P+YN VAERALGL+++  IA   Q   +    P   +LWA+A+ ++C+  N   TTS    KSPYE+W G+ P  G   PF       +  R +K  P  +KC ++G   N     + +    R+ +  +   W   P
Sbjct:  378 RAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LKPAVYKVKRTHKSEPTAQKCFYLGPGINTNRDCVRILNEKRRAITTRNFTWQSVP 601          
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 8.190e-24
Identity = 66/167 (39.52%), Postives = 92/167 (55.09%), Query Frame = 0
Query:    5 SLGGNSYVVIFVNDCTRFKVVKFVTRKSDSSAAVLSLIADY-INPQKLSIKFVPTDNGGKF-EGEFQRKLDLRSITHELTPPDTPQYNEVAERALGLLREKEIALMEQLDNII----NVPRETLWAQAMLFTCDVTNKPVTTSTDGVKSPYELWFGNIPTAGHLQPF 165
            SLGG  Y +I  +D TR+  V F+  KSD++ A    +A+   N     +  V +DNGG+F EGEF R      I  E TP  +P+Y+ VAERALGL+ +  +A   Q   +     N P  +LWA+A+ ++C+  N   TTS    KSPYE+W G+ P  G   PF
Sbjct:   49 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYDGVAERALGLIEDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF 213          
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.690e-23
Identity = 66/155 (42.58%), Postives = 87/155 (56.13%), Query Frame = 0
Query:    1 MKQSSLGGNSYVVIFVNDCTRFKVVKFVTRKSDSSAAVLSLIADYINPQKLSIKFVP-TDNGGKFEGEFQRKLDLRSITHELTPPDTPQYNEVAERALGLLREKEIALMEQLDNII-NVPRET-LWAQAMLFTCDVTNKPVTTSTDGVKSPYELW 152
            M+  S+GGN Y +I  +DCTR+  V F+  KSD++AA    +ADY         FV  TD GG+F+G+F        I  E TPP+TP+YN VAERALGLL +  +A   Q   +  + P    LWA+A+   C   N   TT   G KSPYEL+
Sbjct:    1 MQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEPYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPYELF 155          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LL52_9PHAE6.120e-2738.50Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JAQ2_9PHAE1.630e-2629.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTI6_9PHAE1.020e-2534.82Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZQ8_9PHAE1.030e-2534.82Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.040e-2534.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.050e-2534.82Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5KAM7_9PHAE7.890e-2534.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1N9_9PHAE6.360e-2433.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J7U9_9PHAE8.190e-2439.52Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKB4_9PHAE1.690e-2342.58Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 287..341
e-value: 1.7E-9
score: 37.7
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..175
e-value: 7.1E-15
score: 56.7
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 7..102
e-value: 1.9E-9
score: 37.8
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..156
score: 14.907
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 287..342
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 287..342
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 8..162

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10903contigH-elongata_contig10903:2697..3740 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10903.729.1mRNA_H-elongata_contig10903.729.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig10903 1762..3755 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig10903.729.1 ID=prot_H-elongata_contig10903.729.1|Name=mRNA_H-elongata_contig10903.729.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=344bp
MKQSSLGGNSYVVIFVNDCTRFKVVKFVTRKSDSSAAVLSLIADYINPQK
LSIKFVPTDNGGKFEGEFQRKLDLRSITHELTPPDTPQYNEVAERALGLL
REKEIALMEQLDNIINVPRETLWAQAMLFTCDVTNKPVTTSTDGVKSPYE
LWFGNIPTAGHLQPFGAMGYARRSVRENKMVPKRKKCVFMGIPCNFPTGS
ISVTRQIVERQTVEWIDGPEKTGGHDTSSDDRDMKSTGGETILGRETPQL
NVQELGQEQQLETQEVFSEHEKGTQEAFSEQQKVGQNDKVEKYKYRLVAQ
GFWQVEGVHYTEKYSPTPSTASIRMLLATAVAKDGELRHFDAK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR036397RNaseH_sf
IPR001584Integrase_cat-core
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf