mRNA_H-elongata_contig10903.729.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10903.729.1
Unique NamemRNA_H-elongata_contig10903.729.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A2N9G942_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9G942_FAGSY)

HSP 1 Score: 192 bits (488), Expect = 7.660e-49
Identity = 172/608 (28.29%), Postives = 262/608 (43.09%), Query Frame = 1
Query:    1 DVGGPMKQSSLGGNSYVVIFVNDCTRFKVVKFVTRKSDSSAAVLSLIADYINPQKLSIKFVPTDNGGK-FEGEFQRKLDLRSITHELTPPDTPQYNEVAERALGLLREKEIALMEQLDNIINVPRETLWAQAMLFTCDVTNKPVTTSTDGVKSPYELWFGNIPTAGHLQPFGAMGYARRSVRENKMVPKRKKCVFMGIPCNFPTG----SISVTRQIVERQTV----EWIDGPEKTGGHDTSSDDRDMK--STGGETILGRETPQLNVQELGQE--------------------------------------------------------QQXXXXXXXXXXXXXXXXXXXXXXXVGQNDKVEKYKYRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAVAKDGELRHFDAK*AFLKADIDEELYIS-PRTTMDIFVAELGQKFKLKDMGDARYYMGCQITRNRKARELKIDQHLYVESMVEKFDIKKGRK--ITETLGMPTLSKADEPRNPEEKEEMRNFPYREAVGALMWTATMTRPDIASAVRADFEVCLDTRRSVSGTVLMLAKGAISWFSRMKKVTASGTSEEEYVTLLEAVKEVLFLRQ 1614
            DV GP+   + GG  Y + F++D +R+  +  +  KS+S         +        IK + +D GG+ F  EF+  L    I  + TP  TPQ+N VAER    L +   ++M   +  ++      W  A+     + N+  T S     +PYELW    P+  H++ +G   + R+S   +K+ P+  +C+F+G P    TG    + S  +  V R  +    ++     +T       +DR M   S   E  +   T   NVQE  +                                                          Q                       +G   KVE YK RLVA+G+ Q  G+ Y E +SP     SIR+LL+ A   D E+   D K AFL   I EE+Y+  P   M      L   F +KD+G+A Y +G ++ R+RK R L + Q  Y++ ++ +F ++  +K  +    G+  LSK   P   EE+E+MRN PY  AVG+LM+    TRP          E  +D R+S+SG V  L KGAISW    +  TA  T+E EY+   EA KE +++R+
Sbjct:  506 DVCGPLTHMARGGFFYFITFIDDHSRYGYLYLMKHKSESFEKFKEFRNEVEKQTGKCIKILRSDRGGEYFLDEFKDHLKDNGIISQPTPLGTPQHNGVAERRNRTLLDMVRSMMSMSEFPVS-----FWGYALETAIYLLNRVPTKSVPN--TPYELWTSKKPSLNHIKIWGCPSHVRKS-NVDKLGPRSDRCLFIGYP-KMSTGFYFYNPSEQKVFVSRNAIFLEEDYSLNESRTKVTLEEQNDRPMTVPSENNEEQVIVPTEPSNVQEPRRSIRIIRPPVRLTLLNEIYQMESDGFDNDPVTYQEAMNDKDVEHWKKAMESEMDSMYTNQVWTLVDKPEGIKPIGCKWIYKRKLGPTSKVETYKARLVAKGYTQKAGIDYEETFSPVAMLKSIRILLSIATHYDYEIWQMDVKTAFLNGFIREEIYMDQPVGAMSSIKMWLSSHFAMKDLGEASYILGIKLFRDRKKRLLGLSQVNYIDKILARFSMQDSKKGFLPFKHGVH-LSKKMCPNTQEEREQMRNCPYASAVGSLMYAMLCTRPRHLLCS----EHYIDHRKSISGFVFTLGKGAISWRRCKQDTTADSTTEVEYIAASEAAKEAVWIRK 1099          
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A6H5KBD2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD2_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 1.820e-37
Identity = 93/251 (37.05%), Postives = 139/251 (55.38%), Query Frame = 1
Query:  937 VHYTEKYSPTPSTASIRMLLATAVAKDGELRHFDAK*AFLKADIDEELYISPRTTMDIFVAELGQKFKLKDMGDARYYMGCQITRNRKARELKIDQHLYVESMVEKFDIKKGRKITETLGMPTLSKADEPRNPEEKEEMRNFPYREAVGALMWTATMTRPDIASA-------------------------VRADFEVCLDTRRSVSGTVLMLAKGAISWFSRMKKVTASGTSEEEYVTLLEAVKEVLFLRQ 1614
            V+  E Y+PT + +S+ +L A A  ++  LRHFD K AF+++D+DE +++        FV +L     +K++GD R+Y GC   R+  A  LKI Q  Y E +  +F ++ G++I   +G+  LS+ D+       EE+ ++P+RE +G+LMW AT TRPDIA+A                           AD+      RRSVSG ++M   G ISWFSR +K     T+E EY +L + +KEVLFLRQ
Sbjct:    6 VNCGETYAPTVAVSSVSLLAAMACEQNLSLRHFDIKQAFVQSDLDEHVFMRLPEGCGRFVRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAGMRYGLVTWVLHSGGVVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVKLSTTEAEYFSLADVMKEVLFLRQ 249          
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A2N9EWE6_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EWE6_FAGSY)

HSP 1 Score: 152 bits (384), Expect = 5.780e-37
Identity = 97/252 (38.49%), Postives = 141/252 (55.95%), Query Frame = 1
Query:  865 VGQNDKVEKYKYRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAVAKDGELRHFDAK*AFLKADIDEELYISPRT-TMDIFVAELGQKFKLKDMGDARYYMGCQITRNRKARELKIDQHLYVESMVEKFDIKKGRK-ITETLGMPTLSKADEPRNPEEKEEMRNFPYREAVGALMWTATMTRPDIASAVRADFEVCLDTRRSVSGTVLMLAKGAISWFSRMKKVTASGTSEEEYVTLLEAVKEVLFLRQ 1614
            +G   KVE YK RLVA+G+ Q   + Y E +SP     SIR+LL+ A   D E+   D K AFL   I EE+Y+      M      L   F +KD+G+A Y +  ++ R+RK R L + Q  Y++ ++ +F ++  +K  +       LSK    +  EE+E+MRN PY  A+G+LM+    TRPDI  A  +D    +D R+S+SG V  L KGAISW S  +  TA  T+E EY+   EA KE +++R+
Sbjct:  118 LGPTGKVETYKARLVAKGYTQKASIDYEETFSPVTMLKSIRILLSIAAHYDYEIWQMDVKTAFLNGYIREEIYMDQSVGAMSSIKMWLSSHFAMKDLGEASYILRIKLFRDRKKRLLGLSQVNYIDKILARFSMQDSKKGFSPFRHGVRLSKKMCSKTQEEREKMRNCPYALAIGSLMYAMLCTRPDICYA--SD----IDDRKSISGFVFTLGKGAISWRSCKQDTTADSTTEAEYIAASEAAKEAVWIRK 363          
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A2P6V0G0_9CHLO (Gag-Pol poly n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0G0_9CHLO)

HSP 1 Score: 155 bits (393), Expect = 1.590e-36
Identity = 165/687 (24.02%), Postives = 266/687 (38.72%), Query Frame = 1
Query:    1 DVGGPMKQSSLGGNSYVVIFVNDCTRFKVVKFVTRKSDSSAAVLSLIADYINPQKLSIKFVPTDNGGKF-EGEFQRKLDLRSITHELTPPDTPQYNEVAERALGLLREKEIALMEQLDNIINVPRETLWAQAMLFTCDVTNKPVTTSTDGVKSPYELWFGNIPTAGHLQPFGAMGYARR-SVRENKMVPKRKKCVFMGIPCN-------FPTGSISVTRQIVERQTVEWIDGPEKTGGHDTSSDDRDMKS---TGGETILGRETPQLNVQELGQEQQXXXXXXXXXXXXXXXXXXXXXXXV--------GQNDKVEKYKYRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAVAKDGELRHFDAK*AFLKADIDEELYISPRT-----------------------------TMDIFVAELG-------------------------------------------QK----FKLKDMGDARYYMGCQITRNRKARELKIDQHLYVESMVEKFDIKKGRKITETLGMPTLSKADEPRNPEEKEEMRNFP-------YREAVGALMWTATMTRPDIASAVRA---------------------------DFEVC-------------------LDTRRSVSGTVLMLAKGAISWFSRMKKVTASGTSEEEYVTLLEAVKEVLFLRQ 1614
            D+ GP+  +S GG+ Y    ++D T    V  +  KSD++ +++  +        L +K V +DNGG+F           + + HE T P +PQ N  AER    L EK   ++        +P+  LWA A++    + N+   +  D  K+P+EL++G  P   HL+ FGA  +A   S    K+ P  +    +G   N         +G+I  +R +      EW D   +  G    + +  + +   T  E + G   P     +L  + +                                  N  +E+YK RLV QGF Q EG+ Y E ++P    +++R +L+TA A+  +L   D K AFL   IDEE+Y+SP                               T+   +A+LG                                           QK    F+ +D+G+A +++G  + R+R A+ +K+ Q   ++ ++ K+            GM     A  P N   K   +  P       Y   VG+LM+ +  TRPDIA AV A                           D  +                    +DTRRS +G   +   GAISW SR++   A+ T+E EY+     +K+ L+LR+
Sbjct:  591 DLCGPLPVASAGGSLYFNTILDDFTGMSFVIPLRHKSDAADSIIHTVTMLQRQAGLPVKRVRSDNGGEFCNSTLSEFYTSQGVLHETTNPYSPQQNGKAERLNRTLWEKARPMLSDA----GLPKH-LWADAIVTANYLRNRSPLSGRD--KTPFELFYGTKPDVSHLRIFGATVFAHTPSALRTKLDPVSQPGCLIGYAANRKGYKILLNSGAIITSRDVTFDD--EWQDDAYRITGRSNVAANAAIANEPTTMKEALSG---PDAAAWQLAMDDEMASLIANDTWTLCEPPHGTKPIPAKWVYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAAAQGLDLHQLDIKTAFLNGTIDEEVYVSPPPGYTLGKPTLCCKLNKALYGLKQAPRAWYQTLKAELAKLGFTASQADAGLFISTDPSKPAYLLTYVDDILIVTPKTTSSAAIKQKLMAAFEARDLGNATFFLGMDLIRDRTAKTIKLAQSRNIKDLLSKY------------GMDDAKTASTPANASIKLTKQGTPLDTQTHSYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWAAAKTVLRYLTGTPDIGITFGAGPPGLQVFCDANHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKKGLWLRK 1253          
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A5AHF5_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5AHF5_VITVI)

HSP 1 Score: 149 bits (376), Expect = 1.240e-35
Identity = 99/295 (33.56%), Postives = 145/295 (49.15%), Query Frame = 1
Query:  883 VEKYKYRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAVAKDGELRHFDAK*AFLKADIDEELYIS-PRTTMDIFVAE---LGQKFKLKDMGDARYYMGCQITRNRKARELKIDQHLYVESMVEKFDIKK-GRKITETLGMPTLSKADEPRNPEEKEEMRNFPYREAVGALMWTATMTRPDIASAVR-----------------------------------------------ADFEVCLDTRRSVSGTVLMLAKGAISWFSRMKKVTASGTSEEEYVTLLEAVKEVLFLR 1611
            +E+YK RLVA+GF Q EG+ Y + +SP     S+R+++      D EL   D K AFL  ++DE++Y+  P   + +       L + F + DMG+A Y +G +I R+R    L + Q  Y++ ++E+F+++     I   L    LSK   PRN  E+E+M+  PY  AVG+LM+  T TRPDI+  V                                                +D+  CLD+ +S SG V MLA GAISW S  + +TAS T E E+V   EA    L+LR
Sbjct:  104 IERYKARLVAKGFTQKEGIDYKDTFSPVSKKDSLRIIMTLVAHFDLELHQMDVKTAFLNGNLDEDIYMEQPEGDLGLLHETKEYLSKNFHMVDMGEANYVIGIEIFRDRSRGVLGLSQKGYIDWVLERFNMQSCSSGIAPILKGDKLSKMQCPRNNMEREQMKKIPYASAVGSLMYAQTCTRPDISFVVGMFGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYKRSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLR 398          
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 1.440e-34
Identity = 151/535 (28.22%), Postives = 228/535 (42.62%), Query Frame = 1
Query:    1 DVGGPMKQSSLGGNSYVVIFVNDCTRFKVVKFVTRKSDSSAAVLSLIADY-INPQKLSIKFVPTDNGGKFEGEFQRKLDLRSITHELTPPDTPQYNEVAERALGLLREKEIALMEQLDNII-NVPRET-LWAQAMLFTCDVTNKPVTTSTDGVKSPYELWFGNIPTAGHLQPFGAMGYARRSVRENKMVPKRKKCVFMGIPCNFPTGSISVTRQIVERQT------------------VEW-------IDGPEKTGGHDTSSDDRDM----KSTGGETILGRET-----------PQLNV-----QELGQ-----EQQXXXXXXXXXXXXXXXXXXXXXXXVGQNDKVEKYKYRLVAQGF-WQVEGVHYT-----EKYSPTPSTASIRMLLATAVAKDGELRHFDAK*AFLKADIDEELYISPRTTMDIFVAELGQKFKLKDMGDARYYMGCQITRNRKARELKIDQHLYVESMVEKFDIKKGRKITETLGMPTLSKADEPRNPEEKEEMR-NFPYREAVGALMWTATMTRPDIA 1425
            D+GG MK  S+GGN Y +I  +D +R+  V F+  KSD++      +ADY        +    TD GG+F+G+F        I  E TPP TP+YN VAERALGL+ +  +A   Q   +  + P    LWA+A+   C   N   T S +G KS YE++  + P  G   PF       +S R+ K  PK +K  ++G   N P   +S+T  I ++ +                  V W       IDG +KTG   T +  +++    K+TG + +L  +T           P +        E G+     + +                        G+   VE   Y L   G  W  E          E+Y   P     R ++      DGE+         +   +D+ L  +     +   A L +K  +KD+G+   Y GC I  + +    K+ Q  Y+ESM+++FD      +T T   P  + AD    P+  +E   + P REA+G LMWT  +TRPDIA
Sbjct:   27 DLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPF-LKPAVFKSRRKAKSQPKGEKGWYLGPAHNHPRECLSMTSPIGQKPSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTG---TFTKVKELYEGQKATGSKWVLSWKTNDKGLIVDFKAPSIKTVIAVASEKGKKLAHWDVKQAYIHAKLKDELYLRFPGGCGSMSGKVVNVESALYGLKQSGREWGFEAADALIEDGYEQYRVDPCV--FRKVV------DGEVV------GLIVIYVDDILVAADEGGREELFASLNKKSPVKDLGECTLYDGCAIAMDVENGITKLSQTAYIESMLKRFD------VTTTAFTPAATDAD--LGPKRDDEPAVDKPVREAIGCLMWTK-LTRPDIA 534          
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A2P6V0L8_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0L8_9CHLO)

HSP 1 Score: 150 bits (378), Expect = 1.550e-34
Identity = 160/677 (23.63%), Postives = 259/677 (38.26%), Query Frame = 1
Query:    1 DVGGPMKQSSLGGNSYVVIFVNDCTRFKVVKFVTRKSDSSAAVLSLIADYINPQKLSIKFVPTDNGGKF-EGEFQRKLDLRSITHELTPPDTPQYNEVAERALGLLREKEIALMEQLDNIINVPRETLWAQAMLFTCDVTNKPVTTSTDGVKSPYELWFGNIPTAGHLQPFGAMGYARR-SVRENKMVPKRKKCVFMGIPCN-------FPTGSISVTRQIV------------------------------------ERQTVEWIDGPEKTGGHDTSSDDRDMKS---TGGETILGRETPQLNVQELGQEQQXXXXXXXXXXXXXXXXXXXXXXXV--------GQNDKVEKYKYRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAVAKDGELRHFDAK*AFLKADIDEELYISPRT-----------------------------TMDIFVAELG-------------------------------------------QK----FKLKDMGDARYYMGCQITRNRKARELKIDQHLYVESMVEKFDIKKGRKITETLGMPTLSKADEPRNPEEKEEMRNFP-------YREAVGALMWTATMTRPDIASAVRADFEVCLDTRRSVSGTVLMLAKGAISWFSRMKKVTASGTSEEEYVTLLEAVKEVLFLRQ 1614
            D+ GP+  +S GG+ Y    ++D T    V  +  KSD++ +++  +        L +K V +DNGG+F           + + HE T P +PQ N  AER    L EK   ++        +P+  LWA A++    + N+   +  D  K+P+EL++G  P   HL+ FGA  +A   S    K+ P  +    +G   N         +G+I  +R +                                      R   EW D   +  G    + +  + +   T  E + G   P     +L  + +                                  N  +E+YK RLV QGF Q EG+ Y E ++P    +++R +L+TA A+D +L   D K AFL   IDEE+Y+SP                               T+   +A+LG                                           QK    F+ +D+G+A +++G  + R+R A+ +K+ Q   ++ ++ K+            GM     A  P N   K   +  P       Y   VG+LM       P +     AD    +DTRRS +G   +   GAISW SR++   A+ T+E EY+     +KE ++LR+
Sbjct:  626 DLCGPLPVASAGGSLYFNTILDDFTGMSFVIPLRHKSDAADSIIHTVTMLQRQAGLPVKRVRSDNGGEFCNSTLSEFYTSQGVLHETTNPYSPQQNGKAERLNRTLWEKARPMLSDA----GLPKH-LWADAIVTANYLRNRSPLSGRD--KTPFELFYGTKPDVSHLRIFGATVFAHTPSALRTKLDPVSQPGRLIGYAANRKGYKILLNSGAIITSRDVTFDESKPPKPTSPTSHKPPSQPETSQPEPRRQVRVAARRPASEWQDDAYRITGRSNVAANAAIANEPTTMKEALSG---PDAAAWQLAMDDEMASLIANDTWTLCEPPHGTKPIPAKWVYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAAAQDLDLHQLDIKTAFLNGTIDEEVYVSPPPGYTLGKPTLCCKLNKALYGLKQAPRAWYQTLKAELAKLGFTASQADAGLFISTDPSKPAYLLTYVDDILIVTPKTTSSAAIKQKLMAAFEARDLGNATFFLGMDLIRDRTAKTIKLAQSRNIKDLLSKY------------GMDDAKTASTPANASIKLTKQGTPLDTQTHSYSALVGSLM------PPGLQVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGMWLRK 1274          
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A2N9IFW4_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IFW4_FAGSY)

HSP 1 Score: 149 bits (375), Expect = 2.700e-34
Identity = 103/308 (33.44%), Postives = 148/308 (48.05%), Query Frame = 1
Query:  865 VGQNDKVEKYKYRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAVAKDGELRHFDAK*AFLKADIDEELYISPRTTMDIFVAE-----------LGQKFKLKDMGDARYYMGCQITRNRKARELKIDQHLYVESMVEKFDIKKGRKITETLGMPT-LSKADEPRNPEEKEEMRNFPYREAVGALMWTATMTRPDIASAVR----------------------------------------------ADFEVCLDTRRSVSGTVLMLAKGAISWFSRMKKVTASGTSEEEYVTLLEAVKEVLFLRQ 1614
            +G   KVE YK RLVA+G+ Q  G+ Y E +SP     SIR+LL+ A   D E+   D K AFL  +I EE+Y+       I  A            L   F +KD+G+A Y +G ++ R+RK R L + Q  Y++ ++ +F ++  +K          LSK   P+  EE+E+MRN PY  AVG+LM+    TRPDI  AV                                               ++F+  +D R+S+SG V  L KGAISW S  +  TA  T+E EY+   EA KE +++R+
Sbjct:  602 LGPTGKVETYKARLVAKGYTQKVGIDYEETFSPVAMLKSIRILLSIAAHYDYEIWQMDVKTAFLNGNIREEIYMDQPVGFHISWARIKRAMSSIKMWLSSHFAMKDLGEASYILGIKLFRDRKKRLLGLSQVNYIDKILARFSMQDSKKGFSPFRHGVHLSKNMCPKTQEEREKMRNCPYASAVGSLMYAMLCTRPDICYAVSIVSRYQSNPGPEHWTAVKHILKYLNRTKHYFLVFGSKDLNIQGYTDSNFQSDIDDRKSISGFVFTLGKGAISWRSCKQDTTADSTTEAEYIAASEAAKEAVWIRK 909          
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A6H5L0Z9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z9_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 3.120e-34
Identity = 99/287 (34.49%), Postives = 143/287 (49.83%), Query Frame = 1
Query:  949 EKYSPTPSTASIRMLLATAVAKDGELRHFDAK*AFLKADIDEELY----------------ISPRTTMDIFVAELGQKFKLKDMGDARYYMGCQITRNRKARELKIDQHLYVESMVEKFDIKKGRKITETLGMPTLSKADEPRNPEEKEEMRNFPYREAVGALMWTATMTRPDIASAVRA-----------------------------------------DFEVCLDT--------RRSVSGTVLMLAKGAISWFSRMKKVTASGTSEEEYVTLLEAVKEVLFLRQ 1614
            E Y+PT + +S+R+L A A  ++  LRHFD K AF+++D+DE+++                I      D F  +L     +K++GD R+Y GC   R+  A  LKI Q  Y E +  +F ++ G++I   +G+  LS+ D+       EE+ ++P+RE +G+LMW AT TRPDIA+AVRA                                           EV  D         RRSVSG ++M   G ISWFSR +K     T+E EYV+L + +KEVLFLRQ
Sbjct:   10 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQ------DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHCRAGLGILGYVVRTSELGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQ 289          
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Match: A0A4Y2GYT7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2GYT7_ARAVE)

HSP 1 Score: 147 bits (371), Expect = 4.210e-34
Identity = 147/593 (24.79%), Postives = 252/593 (42.50%), Query Frame = 1
Query:    1 DVGGPMKQSSLGGNSYVVIFVNDCTRFKVVKFVTRKSDSSAAVLSLIADYI----NPQKLSIKFVPTDNGGKFEG-EFQRKLDLRSITHELTPPDTPQYNEVAERALGLLREKEIALMEQLDNIINVPRETLWAQAMLFTCDVTNK-PVTTSTDGVKSPYELWFGNIPTAGHLQPFGAMGYAR-RSVRENKMVPKRKKCVFMGIPCNFPTGSISV-TRQIVERQTVEWIDGPEKTGGHDTSSDDRDMKSTGGETILGRETPQLNVQELGQEQQXXXXXXXXXXXXXXXXXXXXXXXVGQND----------------------------KVEKYKYRLVAQGFWQVEGVHYTEKYSPTPSTASIRMLLATAVAKDGELRHFDAK*AFLKADIDEELYIS-------------------------------------------------------------PRTTM----DIFVA-----------ELGQKFKLKDMGDARYYMGCQITRNRKARELKIDQHLYVESMVEKFDIKKGRKITETLGMPTLSKADEPRNPEEKEE---MRNFPYREAVGALMWTATMTRPDIASAV 1434
            D+ GPM   S+ G  Y++ FV+D +R+ ++  +++K +    VLS + +YI    N    ++K + +DNGG++ G E +  L  + I H+LT P +PQ N V+ER    L E    L+ +     N+P+   WA+A +    + N+ P+       K+PYELW  + P   H++ FG   YA  +  +  K+  K  + +F+G         I +   +I+  +TV++I+ P      +     +  ++T     L  E  + +  E G+  +                       + +N+                             +E+YK RLVAQGF Q  G  Y E ++P  +  +IR  LA A  K+  + H D K AFL  ++++E+Y+S                                                             P   +    D+ +A           EL ++++LK++G+  YY+G  I R ++     ++Q   +E +VEKF++K+ +        PT    D     +E E+     N  YR+AVGAL++ AT++RPDIA AV
Sbjct:  111 DLCGPMPTQSVSGKCYILTFVDDYSRYSMIYLLSKKDE----VLSKLKEYIAMTRNKFGRTLKVLRSDNGGEYIGKEIEDFLKEQGIVHQLTVPYSPQLNGVSERKNRSLIEMTRCLLSEA----NLPQR-FWAEAAMTATYLQNRLPIKPKG---KTPYELWTNHKPNLSHIRVFGCKAYAYIQKQKRRKLDSKAIEGIFLGYDYRSKGYRIYLGDNKIMISRTVKFIENPPPYAKKEAKELQKQDETTQQLVELELEHEENHSMEEGEINERTEMENPYEKQKWIESTKEEMESLQKNETWKLVTPPSGKKVIGCRWTFKAKYDSKGNIERYKARLVAQGFSQKFGTDYDETFAPVVTYTTIRTFLAAAAYKNLNVTHVDIKTAFLHGNLEDEVYMSQPEGYIEAGQEQKVCKLNKAIYGLKQAARAWHLKIGESLIKYGFEQSKADPCLFKFANNGNPMYIIVYVDDLLIAGKDEDIRKIIKELEEEYELKNLGEVNYYLGINIERTKEGN-FALNQKNKIEEIVEKFNLKEAK--------PTNIPVDPNYLKQEGEDDILPNNTQYRKAVGALLYIATVSRPDIAVAV 682          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10903.729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9G942_FAGSY7.660e-4928.29Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A6H5KBD2_9PHAE1.820e-3737.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9EWE6_FAGSY5.780e-3738.49Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P6V0G0_9CHLO1.590e-3624.02Gag-Pol poly n=1 Tax=Micractinium conductrix TaxID... [more]
A5AHF5_VITVI1.240e-3533.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAM7_9PHAE1.440e-3428.22Integrase catalytic domain-containing protein n=1 ... [more]
A0A2P6V0L8_9CHLO1.550e-3423.63Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2N9IFW4_FAGSY2.700e-3433.44CCHC-type domain-containing protein n=1 Tax=Fagus ... [more]
A0A6H5L0Z9_9PHAE3.120e-3434.49Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y2GYT7_ARAVE4.210e-3424.79Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10903contigH-elongata_contig10903:1762..3755 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score111.3
Seed ortholog evalue9e-22
Seed eggNOG ortholog3641.EOY12702
KEGG koko:K13459
KEGG Pathwayko04626,map04626
GOsGO:0005575,GO:0005623,GO:0005886,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0016020,GO:0023052,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071944
EggNOG free text desc.Belongs to the disease resistance NB-LRR family
EggNOG OGs37T06@33090,COG2801@1,KOG0017@2759,KOG4658@1,KOG4658@2759
COG Functional cat.T
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons4
Model size1614
Cds size1032
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10903.729.1prot_H-elongata_contig10903.729.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10903 2697..3740 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929617.321294-UTR-H-elongata_contig10903:1761..19351622929617.321294-UTR-H-elongata_contig10903:1761..1935Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10903 1762..1935 -
1691679093.1148355-UTR-H-elongata_contig10903:1761..19351691679093.1148355-UTR-H-elongata_contig10903:1761..1935Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10903 1762..1935 -
1622929617.3359954-UTR-H-elongata_contig10903:2079..24231622929617.3359954-UTR-H-elongata_contig10903:2079..2423Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10903 2080..2423 -
1691679093.127286-UTR-H-elongata_contig10903:2079..24231691679093.127286-UTR-H-elongata_contig10903:2079..2423Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10903 2080..2423 -
1622929617.3507187-UTR-H-elongata_contig10903:2647..26961622929617.3507187-UTR-H-elongata_contig10903:2647..2696Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10903 2648..2696 -
1691679093.1347163-UTR-H-elongata_contig10903:2647..26961691679093.1347163-UTR-H-elongata_contig10903:2647..2696Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10903 2648..2696 -
1622929617.3810415-UTR-H-elongata_contig10903:3740..37551622929617.3810415-UTR-H-elongata_contig10903:3740..3755Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10903 3741..3755 -
1691679093.1607099-UTR-H-elongata_contig10903:3740..37551691679093.1607099-UTR-H-elongata_contig10903:3740..3755Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10903 3741..3755 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929617.3603935-CDS-H-elongata_contig10903:2696..31201622929617.3603935-CDS-H-elongata_contig10903:2696..3120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10903 2697..3120 -
1691679093.1419957-CDS-H-elongata_contig10903:2696..31201691679093.1419957-CDS-H-elongata_contig10903:2696..3120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10903 2697..3120 -
1622929617.3714814-CDS-H-elongata_contig10903:3132..37401622929617.3714814-CDS-H-elongata_contig10903:3132..3740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10903 3133..3740 -
1691679093.1516929-CDS-H-elongata_contig10903:3132..37401691679093.1516929-CDS-H-elongata_contig10903:3132..3740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10903 3133..3740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10903.729.1

>prot_H-elongata_contig10903.729.1 ID=prot_H-elongata_contig10903.729.1|Name=mRNA_H-elongata_contig10903.729.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=344bp
MKQSSLGGNSYVVIFVNDCTRFKVVKFVTRKSDSSAAVLSLIADYINPQK
LSIKFVPTDNGGKFEGEFQRKLDLRSITHELTPPDTPQYNEVAERALGLL
REKEIALMEQLDNIINVPRETLWAQAMLFTCDVTNKPVTTSTDGVKSPYE
LWFGNIPTAGHLQPFGAMGYARRSVRENKMVPKRKKCVFMGIPCNFPTGS
ISVTRQIVERQTVEWIDGPEKTGGHDTSSDDRDMKSTGGETILGRETPQL
NVQELGQEQQLETQEVFSEHEKGTQEAFSEQQKVGQNDKVEKYKYRLVAQ
GFWQVEGVHYTEKYSPTPSTASIRMLLATAVAKDGELRHFDAK*
back to top

mRNA from alignment at H-elongata_contig10903:1762..3755-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10903.729.1 ID=mRNA_H-elongata_contig10903.729.1|Name=mRNA_H-elongata_contig10903.729.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1994bp|location=Sequence derived from alignment at H-elongata_contig10903:1762..3755- (Himanthalia elongata Himel1 dioecious)
GACGTGGGTGGACCGATGAAGCAATCGAGTCTCGGCGGGAACAGCTACGT CGTCATTTTCGTGAACGACTGCACCCGTTTCAAGGTGGTAAAGTTCGTTA CAAGGAAGAGTGACTCATCGGCCGCGGTTTTGTCTTTGATTGCAGATTAT ATCAACCCGCAGAAGCTGTCGATCAAGTTCGTACCGACGGATAATGGTGG GAAGTTCGAGGGGGAATTTCAGCGCAAACTAGACCTCCGCAGCATCACGC ATGAGCTTACCCCGCCAGACACGCCGCAGTACAACGAGGTGGCCGAACGC GCGCTTGGACTTTTACGAGAAAAGGAGATCGCTCTGATGGAGCAGTTAGA CAACATTATCAACGTGCCGCGAGAGACGTTATGGGCCCAGGCAATGCTTT TCACGTGCGACGTCACCAACAAGCCAGTCACGACGTCAACAGATGGGGTT AAGTCGCCGTACGAACTGTGGTTTGGAAATATTCCTACTGCCGGTCATTT GCAACCGTTTGGAGCTATGGGATACGCGCGACGGAGCGTACGCGAAAACA AGATGGTGCCGAAAAGAAAGAAATGCGTATTCATGGGAATTCCATGCAAC TTCCCCACTGGCAGCATTAGCGTGTGACTCGTAAGGACAAGGCAGATCGT GGAGCGGCAGACCGTGGAGTGGATCGACGGGCCTGAAAAGACCGGGGGCC ACGACACCAGCAGCGATGACCGCGACATGAAGTCGACGGGAGGTGAAACC ATTTTGGGGAGAGAAACTCCGCAGCTCAATGTTCAGGAGCTGGGACAGGA ACAGCAGTTGGAGACACAGGAGGTGTTTTCAGAGCACGAAAAGGGGACGC AGGAGGCGTTTTCAGAGCAGCAAAAGGTCGGACAGAACGACAAGGTCGAG AAATACAAATACCGACTTGTAGCTCAAGGTTTCTGGCAGGTGGAAGGTGT ACACTATACGGAAAAATACTCGCCCACGCCATCGACCGCGTCAATCCGGA TGCTTTTGGCCACAGCAGTGGCCAAGGACGGTGAGCTGCGCCATTTCGAC GCGAAGTAGGCATTCTTGAAAGCGGACATCGATGAGGAATTGTACATATC CCCGAGGAGTACCAGGCGTTTCCAGGGGCAGTGGGACGGCTGAACAAGGT CATTTATGGACTCGTACAGGCGGGGAGGTGCTGGATCAACAAGTTCTGCG GCGATATGGCGGCGATTGGATTCGAGCAGGGAAAGGCGGATCCGTGCGGG TTCCGCAAGGTCGTTGACGGTGAGGCGGAAGTGGTGGTGGTCGTACACGT GGACGATATTCTGGCTCACGCCAAGGACAAAGCGACTATGGATATATTCG TGGCTGAGCTTGGACAAAAGTTCAAATTGAAGGACATGGGTGACGCCAGG TACTACATGGGCTGTCAAATTACTAGGAACCGCAAGGCGCGCGAGCTGAA GATCGACCAACACTTATACGTGGAGTCGATGGTGGAAAAGTTCGACATCA AGAAAGGAAGAAAGATAACGGAGACGTTGGGGATGCCAACACTCTCAAAG GCGGACGAGCCGCGGAACCCGGAGGAGAAGGAGGAAATGAGGAATTTCCC ATACCGGGAAGCAGTGGGAGCGCTTATGTGGACAGCGACGATGACACGGC CGGATATTGCGAGCGCAGTACGCGCTGTGGCCAGGTTCTGCGAAAACCCT GGGCCGGCGCATAAGAAGGCAGTGATGAAGATTATGCAGCATCTGCTTCA CACGAAGGATTGGGGGATTACATACGGTGGACAGGGCTGTGGACTCTGCA TGGAGGCATACACGGGCTAGGATTTTGAAGTCTGTCTGGATACGAGACGA TCGGTATCAGGTACGGTGTTGATGTTGGCGAAGGGGGCGATCAGCTGGTT CTCAAGGATGAAAAAAGTGACAGCATCGGGTACCTCGGAGGAAGAGTACG TTACTTTATTAGAGGCGGTAAAGGAGGTTCTATTTTTGAGACAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig10903:1762..3755-

>mRNA_H-elongata_contig10903.729.1 ID=mRNA_H-elongata_contig10903.729.1|Name=mRNA_H-elongata_contig10903.729.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2064bp|location=Sequence derived from alignment at H-elongata_contig10903:1762..3755- (Himanthalia elongata Himel1 dioecious)
ATGAAGCAATCGAGTCTCGGCGGGAACAGCTACGTCGTCATTTTCGTGAA
CGACTGCACCCGTTTCAAGGTGGTAAAGTTCGTTACAAGGAAGAGTGACT
CATCGGCCGCGGTTTTGTCTTTGATTGCAGATTATATCAACCCGCAGAAG
CTGTCGATCAAGTTCGTACCGACGGATAATGGTGGGAAGTTCGAGGGGGA
ATTTCAGCGCAAACTAGACCTCCGCAGCATCACGCATGAGCTTACCCCGC
CAGACACGCCGCAGTACAACGAGGTGGCCGAACGCGCGCTTGGACTTTTA
CGAGAAAAGGAGATCGCTCTGATGGAGCAGTTAGACAACATTATCAACGT
GCCGCGAGAGACGTTATGGGCCCAGGCAATGCTTTTCACGTGCGACGTCA
CCAACAAGCCAGTCACGACGTCAACAGATGGGGTTAAGTCGCCGTACGAA
CTGTGGTTTGGAAATATTCCTACTGCCGGTCATTTGCAACCGTTTGGAGC
TATGGGATACGCGCGACGGAGCGTACGCGAAAACAAGATGGTGCCGAAAA
GAAAGAAATGCGTATTCATGGGAATTCCATGCAACTTCCCCACTGGCAGC
ATTAGCGTATGAAGCAATCGAGTCTCGGCGGGAACAGCTACGTCGTCATT
TTCGTGAACGACTGCACCCGTTTCAAGGTGGTAAAGTTCGTTACAAGGAA
GAGTGACTCATCGGCCGCGGTTTTGTCTTTGATTGCAGATTATATCAACC
CGCAGAAGCTGTCGATCAAGTTCGTACCGACGGATAATGGTGGGAAGTTC
GAGGGGGAATTTCAGCGCAAACTAGACCTCCGCAGCATCACGCATGAGCT
TACCCCGCCAGACACGCCGCAGTACAACGAGGTGGCCGAACGCGCGCTTG
GACTTTTACGAGAAAAGGAGATCGCTCTGATGGAGCAGTTAGACAACATT
ATCAACGTGCCGCGAGAGACGTTATGGGCCCAGGCAATGCTTTTCACGTG
CGACGTCACCAACAAGCCAGTCACGACGTCAACAGATGGGGTTAAGTCGC
CGTACGAACTGTGGTTTGGAAATATTCCTACTGCCGGTCATTTGCAACCG
TTTGGAGCTATGGGATACGCGCGACGGAGCGTACGCGAAAACAAGATGGT
GCCGAAAAGAAAGAAATGCGTATTCATGGGAATTCCATGCAACTTCCCCA
CTGGCAGCATTAGCGTGACAAGGCAGATCGTGGAGCGGCAGACCGTGGAG
TGGATCGACGGGCCTGAAAAGACCGGGGGCCACGACACCAGCAGCGATGA
CCGCGACATGAAGTCGACGGGAGGTGAAACCATTTTGGGGAGAGAAACTC
CGCAGCTCAATGTTCAGGAGCTGGGACAGGAACAGCAGTTGGAGACACAG
GAGGTGTTTTCAGAGCACGAAAAGGGGACGCAGGAGGCGTTTTCAGAGCA
GCAAAAGGTCGGACAGAACGACAAGGTCGAGAAATACAAATACCGACTTG
TAGCTCAAGGTTTCTGGCAGGTGGAAGGTGTACACTATACGGAAAAATAC
TCGCCCACGCCATCGACCGCGTCAATCCGGATGCTTTTGGCCACAGCAGT
GGCCAAGGACGGTGAGCTGCGCCATTTCGACGCGAAGTAGGACAAGGCAG
ATCGTGGAGCGGCAGACCGTGGAGTGGATCGACGGGCCTGAAAAGACCGG
GGGCCACGACACCAGCAGCGATGACCGCGACATGAAGTCGACGGGAGGTG
AAACCATTTTGGGGAGAGAAACTCCGCAGCTCAATGTTCAGGAGCTGGGA
CAGGAACAGCAGTTGGAGACACAGGAGGTGTTTTCAGAGCACGAAAAGGG
GACGCAGGAGGCGTTTTCAGAGCAGCAAAAGGTCGGACAGAACGACAAGG
TCGAGAAATACAAATACCGACTTGTAGCTCAAGGTTTCTGGCAGGTGGAA
GGTGTACACTATACGGAAAAATACTCGCCCACGCCATCGACCGCGTCAAT
CCGGATGCTTTTGGCCACAGCAGTGGCCAAGGACGGTGAGCTGCGCCATT
TCGACGCGAAGTAG
back to top