mRNA_H-elongata_contig1088.714.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1088.714.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 265 bits (678), Expect = 4.000e-75 Identity = 159/455 (34.95%), Postives = 243/455 (53.41%), Query Frame = 1
Query: 7 FKQKLDKDGRIEKYKYCLVAQGFRQVKCIHYEESSSPTPAQASIRMVMGMIVALGWEARQLDVDMAYLEAYLEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHARLLWSKPFGIELEAKGFQRSQADPCVFRRILHGIVAVVIVVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEAFYYLGCHITQDQNAGTLKFDQHQYIQTMAEHFGVTKTNIIPSVAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHHLAKFNDNSGPTHWRAAQKALEYLWCPRDLGITYGEEPGEGDQV-ISVGRRRLQHLPGHASLSVGRGG---DYGCRGH*LVLTSAKGNDGGGVRIEIRRAG*DGKRVAIPTTGQGVHDPPID-VAIKIREDNEGAIKMVKNRFSSRRTRHVDIKHHIVRNAVDGGVVRIEYVRSGEQHADILTK 1356
F K +K+G+I+ +K LVA+GF Q+ + Y SSSP P+ ASI++++ + G DV AY A L+E+++++LP D ++ ++A+YGL + W L GF++ +ADPCVFR+++ +V ++IV+YVDD+LVA + + D E+ + L FP K+LGE ++ GC I +D AGTL+ Q YI +M E F V T+ IP+ G K + EE + P RE +G++MW +T +RPD+SFA +A+ HW A QK L YL RDLGITY G G V + + + L+ GG +G + +V S+ E AG K P +IK+ EDN+GAI +V+N SS RT+H+D+++H +R G + +++V + EQHAD+LTK
Sbjct: 788 FSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSS-------TEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTK 1227
BLAST of mRNA_H-elongata_contig1088.714.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 265 bits (678), Expect = 8.080e-75 Identity = 159/455 (34.95%), Postives = 243/455 (53.41%), Query Frame = 1
Query: 7 FKQKLDKDGRIEKYKYCLVAQGFRQVKCIHYEESSSPTPAQASIRMVMGMIVALGWEARQLDVDMAYLEAYLEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHARLLWSKPFGIELEAKGFQRSQADPCVFRRILHGIVAVVIVVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEAFYYLGCHITQDQNAGTLKFDQHQYIQTMAEHFGVTKTNIIPSVAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHHLAKFNDNSGPTHWRAAQKALEYLWCPRDLGITYGEEPGEGDQV-ISVGRRRLQHLPGHASLSVGRGG---DYGCRGH*LVLTSAKGNDGGGVRIEIRRAG*DGKRVAIPTTGQGVHDPPID-VAIKIREDNEGAIKMVKNRFSSRRTRHVDIKHHIVRNAVDGGVVRIEYVRSGEQHADILTK 1356
F K +K+G+I+ +K LVA+GF Q+ + Y SSSP P+ ASI++++ + G DV AY A L+E+++++LP D ++ ++A+YGL + W L GF++ +ADPCVFR+++ +V ++IV+YVDD+LVA + + D E+ + L FP K+LGE ++ GC I +D AGTL+ Q YI +M E F V T+ IP+ G K + EE + P RE +G++MW +T +RPD+SFA +A+ HW A QK L YL RDLGITY G G V + + + L+ GG +G + +V S+ E AG K P +IK+ EDN+GAI +V+N SS RT+H+D+++H +R G + +++V + EQHAD+LTK
Sbjct: 1167 FSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSS-------TEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTK 1606
BLAST of mRNA_H-elongata_contig1088.714.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 265 bits (678), Expect = 8.240e-75 Identity = 159/455 (34.95%), Postives = 243/455 (53.41%), Query Frame = 1
Query: 7 FKQKLDKDGRIEKYKYCLVAQGFRQVKCIHYEESSSPTPAQASIRMVMGMIVALGWEARQLDVDMAYLEAYLEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHARLLWSKPFGIELEAKGFQRSQADPCVFRRILHGIVAVVIVVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEAFYYLGCHITQDQNAGTLKFDQHQYIQTMAEHFGVTKTNIIPSVAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHHLAKFNDNSGPTHWRAAQKALEYLWCPRDLGITYGEEPGEGDQV-ISVGRRRLQHLPGHASLSVGRGG---DYGCRGH*LVLTSAKGNDGGGVRIEIRRAG*DGKRVAIPTTGQGVHDPPID-VAIKIREDNEGAIKMVKNRFSSRRTRHVDIKHHIVRNAVDGGVVRIEYVRSGEQHADILTK 1356
F K +K+G+I+ +K LVA+GF Q+ + Y SSSP P+ ASI++++ + G DV AY A L+E+++++LP D ++ ++A+YGL + W L GF++ +ADPCVFR+++ +V ++IV+YVDD+LVA + + D E+ + L FP K+LGE ++ GC I +D AGTL+ Q YI +M E F V T+ IP+ G K + EE + P RE +G++MW +T +RPD+SFA +A+ HW A QK L YL RDLGITY G G V + + + L+ GG +G + +V S+ E AG K P +IK+ EDN+GAI +V+N SS RT+H+D+++H +R G + +++V + EQHAD+LTK
Sbjct: 1187 FSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSS-------TEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTK 1626
BLAST of mRNA_H-elongata_contig1088.714.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 265 bits (678), Expect = 8.380e-75 Identity = 159/455 (34.95%), Postives = 243/455 (53.41%), Query Frame = 1
Query: 7 FKQKLDKDGRIEKYKYCLVAQGFRQVKCIHYEESSSPTPAQASIRMVMGMIVALGWEARQLDVDMAYLEAYLEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHARLLWSKPFGIELEAKGFQRSQADPCVFRRILHGIVAVVIVVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEAFYYLGCHITQDQNAGTLKFDQHQYIQTMAEHFGVTKTNIIPSVAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHHLAKFNDNSGPTHWRAAQKALEYLWCPRDLGITYGEEPGEGDQV-ISVGRRRLQHLPGHASLSVGRGG---DYGCRGH*LVLTSAKGNDGGGVRIEIRRAG*DGKRVAIPTTGQGVHDPPID-VAIKIREDNEGAIKMVKNRFSSRRTRHVDIKHHIVRNAVDGGVVRIEYVRSGEQHADILTK 1356
F K +K+G+I+ +K LVA+GF Q+ + Y SSSP P+ ASI++++ + G DV AY A L+E+++++LP D ++ ++A+YGL + W L GF++ +ADPCVFR+++ +V ++IV+YVDD+LVA + + D E+ + L FP K+LGE ++ GC I +D AGTL+ Q YI +M E F V T+ IP+ G K + EE + P RE +G++MW +T +RPD+SFA +A+ HW A QK L YL RDLGITY G G V + + + L+ GG +G + +V S+ E AG K P +IK+ EDN+GAI +V+N SS RT+H+D+++H +R G + +++V + EQHAD+LTK
Sbjct: 1330 FSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSS-------TEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTK 1769
BLAST of mRNA_H-elongata_contig1088.714.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE) HSP 1 Score: 246 bits (627), Expect = 1.330e-69 Identity = 155/455 (34.07%), Postives = 237/455 (52.09%), Query Frame = 1
Query: 16 KLDKDGRIEKYKYCLVAQGFRQVKCIHYEESSSPTPAQASIRMVMGMIVALGWEARQLDVDMAYLEAYLEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHARLLWSKPFGIELEAKGFQRSQADPCVFRRILHGIVAVVIVVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEAFYYLGCHITQDQNAGTLKFDQHQYIQTMAEHFGVTKTNIIPSVAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHHLAKFNDNSGPTHWRAAQKALEYLWCPRDLGITYGEEPGEGDQVI-------SVGRRRLQHLPGHASLSVGRGGDYGCRGH*LVLTSAKGNDGGGVRIEIRRAG*DGKRVAIPTTGQGVHDPPI-DVAIKIREDNEGAIKMVKNRFSSRRTRHVDIKHHIVRNAVDGGVVRIEYVRSGEQHADILTK 1356
K +K+G+I+ K VA+GF Q+ I SSSP P+ ASI++++ + G DV AY A L+E+++++LP D ++ ++A+YGL + W L GF++ +ADPCVFR+++ +V ++IV+YVDD+LVA + + D E+ + L FP K+LGE ++ GC I +D +AGTL+ Q YI +M E F V T+ IP+ G K + ++ + P RE VG++MW +T +RPD+SFA +A+ HW A QK L YL RDLGITY G G V + RR + L A+ G +G + +V S+ E AG K P +I++ EDN+GAI +V+N SS +H+D++ H +R G +++V + EQHADILT+
Sbjct: 382 KTNKEGKIDTLKARRVARGFSQITSIISIPSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------DKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDARYADTEDRRSVSRL---ATTVGGTVVSHGSKARSIVSLSS-------TEAEYIAAGEGVKEALFVRAVLSFVAPETRGSSIQVLEDNQGAIALVQNPLSSGGMKHIDVRFHFIRGLFRSGDTSVKFVPTTEQHADILTQ 818
BLAST of mRNA_H-elongata_contig1088.714.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL) HSP 1 Score: 234 bits (598), Expect = 4.220e-68 Identity = 154/465 (33.12%), Postives = 239/465 (51.40%), Query Frame = 1
Query: 4 VFKQKLDKDGRIEKYKYCLVAQGFRQVKCIHYEESSSPTPAQASIRMVMGMIVALGWEARQLDVDMAYLEAYLEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHARLLWSKPFGIELEAKGFQRSQADPCVFRRILHGIVAVVIVVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEAFYYLGCHITQDQNAGTLKFDQHQYIQTMAEHFGVTKTNIIPSVAGGKA-LSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHHLAKFNDNSGPTHWRAAQKALEYLWCPRDLGITYGEEPGEGDQVISVGRRRLQHLPGHASLS----VGRGGDYGCRGH*LVLTSAKGNDGGGVRIEIRRAG*DGKRVAIPTTGQGV-------HDPPIDVA--IKIREDNEGAIKMVKNRFSSRRTRHVDIKHHIVRNAVDGGVVRIEYVRSGEQHADILTK 1356
VF +K ++ G I ++K LVA GF Q+ + + E+ + + SIR+ + + A G+ QLDVD A+L A L+ED+Y+E PE + +V L KA+YGL A W K L GF+ +D C++ G I +YVDD++V T+ ++ + + + F IK+LG + LG I D+ L +Q Y++T+ E F + + LSK+D P+ D + EM + PYR ++G L + A TRPDI+FA HL++F +N GP HW AA + L YL RD GI+YG + E V+ + S+S + GG ++ AK + + + + + +A+ GQ V HD I++ I++ EDN+GAI + N RT+H+DI+HH VR+ V V+++ YV + Q ADILTK
Sbjct: 43 VFAKKFNEHGDILRWKARLVALGFLQLFGVDFFETYAAVASMGSIRIFLSVCCAAGYILEQLDVDTAFLNADLKEDVYIEPPEGLKVDGDRVLKLNKALYGLKQAGNAWFKTIHGALIDLGFKPCGSDTCIYVGRAGGDTT-YICLYVDDMVVGGRTQTRVDEVKKLIAARFRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSLKLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPVVFCDADWGTSVDDRRSVSGLVIMMNGGP--------IVFKAK------YQSTVALSSSEAEYLALSLCGQEVMWVRTMLHDLGINIKKPIQVWEDNQGAIALAHNAGYHARTKHIDIRHHYVRDLVADSVIKLSYVETQRQLADILTK 492
BLAST of mRNA_H-elongata_contig1088.714.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 241 bits (614), Expect = 4.560e-68 Identity = 147/449 (32.74%), Postives = 231/449 (51.45%), Query Frame = 1
Query: 7 FKQKLDKDGRIEKYKYCLVAQGFRQVKCIHYEESSSPTPAQASIRMVMGMIVALGWEARQLDVDMAYLEAYLEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHARLLWSKPFGIELEAKGFQRSQADPCVFRRILHGIVAVVIVVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEAFYYLGCHITQDQNAGTLKFDQHQYIQTMAEHFGVTKTNIIPSVAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHHLAKFNDNSGPTHWRAAQKALEYLWCPRDLGITYGEEPGEGDQV-ISVGRRRLQHLPGHASLSVGRGG---DYGCRGH*LVLTSAKGNDGGGVRIEIRRAG*DGKRVAIPTTGQGVHDPPIDVAIKIREDNEGAIKMVKNRFSSRRTRHVDIKHHIVRNAVDGGVVRIEYVRSGEQHA 1341
F K +K+G+I+ +K LVA+GF Q+ + Y SSSP P+ ASI++++ + G DV AY A L+E+++++LP D ++ ++A+YGL + W L GF++ +ADPCVFR+++ +V ++IV+YVDD+LVA + + D E+ + L FP K+L E ++ GC I +D GTL+ Q YI +M + F V T+ IP+ G K D E+ + P RE +G++MW +T +RPD+SFA +A+ HW A QK L YL RDLGITY G G V + + + L+ GG +G + +V S+ E AG K P + DN+GA+ +V+N SS RT+H+D++ H +R G + ++++ + EQHA
Sbjct: 342 FSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDD-------EKGGEWPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTXXXXXXTEAEYFTAGECVKEALFVRAVLSFVAPETSGSSIQVLDNQGAMALVQNPLSSGRTKHIDVRFHFIRVLFRSGDISVKFIPTTEQHA 782
BLAST of mRNA_H-elongata_contig1088.714.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE) HSP 1 Score: 239 bits (609), Expect = 7.310e-68 Identity = 160/464 (34.48%), Postives = 245/464 (52.80%), Query Frame = 1
Query: 4 VFKQKLDKDGRIEKYKYCLVAQGFRQVKCIHYEESSSPTPAQASIRMVMGMIVALGWEARQLDVDMAYLEAYLEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHARLLWSKPFGIELEAKGFQRSQADPCVFRRILHGIVAVVIVVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEAFYYLGCHITQDQNAGTLKFDQHQYIQTMAEHFGVTKTNIIPSVAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHHLAKFNDNSGPTHWRAAQKALEYLWCPRDLGITYGEEPGEGDQVISVGRRRLQHLPGH-ASLSVGRGGDYGCRGH*LVLTSA----------KGNDGGGVRIEIRRAG*DGKRVAIPTTG--QGVHDPPIDVAIKIREDNEGAIKMVKNRFSSRRTRHVDIKHHIVRNAVDGGVVRIEYVRSGEQHADILTK 1356
VFK K D+ G+I K K LVA+GF+Q + Y E+ SPT ASIR+V+ + E LD++ A+ ++ L+ ++ ++LP ++ L K++YGL A + K +L GF++S +DPCV R ++ V +I ++VDD+L A TKR E V L P K+LGE ++LGC ++D+ AGT++ Q YI+++ E F + +T+ IP+ S ++ ++ E EE +P+RE+VG LMW A TRP+ S A +A+ + + W+AAQK L YL L + Y + D + VG L ++ AS + R G LVL + K E G DG + A+ G Q + I + EDNEGAI + +N SS R++H+D++HH +RN + GV+ + +V S EQHADILTK
Sbjct: 263 VFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAG-TKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPA-------SPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQ-----DTTVDVGT--LVYVDADFASKATDRRSVSGA----LVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMG-DGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTK 706
BLAST of mRNA_H-elongata_contig1088.714.1 vs. uniprot
Match: A0A6A3NEQ7_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NEQ7_9STRA) HSP 1 Score: 234 bits (597), Expect = 1.190e-66 Identity = 154/452 (34.07%), Postives = 224/452 (49.56%), Query Frame = 1
Query: 4 VFKQKLDKDGRIEKYKYCLVAQGFRQVKCIHYEESSSPTPAQASIRMVMGMIVALGWEARQLDVDMAYLEAYLEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHARLLWSKPFGIELEAKGFQRSQADPCVF-RRILHGIVAVVIVVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEAFYYLGCHITQDQNAGTLKFDQHQYIQTMAEHFGVTKTNIIPS-VAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHHLAKFNDNSGPTHWRAAQKALEYLWCPRDLGITYGEEPGEGDQVISVGRRRLQHLPGHASLSVGRGGDYGCRGH*LVLTSAKGNDGGGVRIEIRRAG*DGKRVAIPTTGQGVHDPPIDVAIKIREDNEGAIKMVKNRFSSRRTRHVDIKHHIVRNAVDGGVVRIEYVRSGEQHADILT 1353
VF +K D+ GR+ +YK LV +GF+Q I + E+ SP SIR+V+ + A + QLD D A+L + L++ +Y+E+P ++R L KA+YG A W+K GF+ D CV+ +R +G + V + Y DD+++A+ T D + L + F +K+LG A + LG I D AGT Q +YI + E FG + + A G LSK+ SP TDAE MR PYR ++G L++ T TRPDI+F L++F +N G HW AA + L YL PR LG+ Y G Q ++ L V D+G S GV + I A K T + I EDN+ AI + +N RT+HVDI+HH ++ V+ G V+++YV + Q ADILT
Sbjct: 223 VFAEKRDQYGRVVRYKARLVTKGFKQKYGIDFFETYSPVAYMNSIRVVLSVCAAYEYRMEQLDADTAFLNSGLKDRVYMEVPFGIENARDYQCQLNKAIYGSEQAASAWNKTIHRVCLGNGFKSCGVDQCVYVKRSKNGFIYVCL--YDDDMIIAAKTSEDIREVKDALKNAFKMKELGPAKFILGMEIDHDMTAGTHNIKQTRYIDDVVERFGQENAKPVDNPCAAGLKLSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFVVTQLSRFLENPGQQHWNAAVRVLRYLKSPRQLGMVYQG----GTQSVT--------------LMVYSDADWGTNLDDRCAPS-------GVMVMIGNAPVVFKPKFQRTVTLSSAEAEYMALSLIWEDNQAAIALAQNAGYHARTKHVDIRHHFIKENVERGTVKVQYVDTKNQLADILT 647
BLAST of mRNA_H-elongata_contig1088.714.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE) HSP 1 Score: 234 bits (596), Expect = 2.250e-66 Identity = 155/455 (34.07%), Postives = 242/455 (53.19%), Query Frame = 1
Query: 31 GRIEKYKYCLVAQGFRQVKCIHYEESSSPTPAQASIRMVMGMIVALGWEARQLDVDMAYLEAYLEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHARLLWSKPFGIELEAKGFQRSQADPCVFRRILHGIVAVVIVVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEAFYYLGCHITQDQNAGTLKFDQHQYIQTMAEHFGVTKTNIIPSVAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHHLAKFNDNSGPTHWRAAQKALEYLWCPRDLGITYGEEPGEGDQVISVGRRRLQHLPGH-ASLSVGRGGDYGCRGH*LVLTS----------AKGNDGGGVRIEIRRAG*DGKRVAIPTTGQGVHDPPIDVA--IKIREDNEGAIKMVKNRFSSRRTRHVDIKHHIVRNAVDGGVVRIEYVRSGEQHADILTK 1356
G+I K K LVA+GF+Q + Y E+ SPT ASIR+++ + E D++ A++++ L+ +++++LP +V L K++YGL A + K +L+ GF++S +DPCV ++ V +I ++VDD+L A +R E V L P K+LGE ++LGC +D+ AGT++ Q YI+++ E F V +T+ IP+ S ++ ++ E E +P+R++VG+LMW A TRPDIS A +A+ + +HW+AAQK L YL L + Y + D ++ VG L ++ AS + R D G LVL + K E G DG + A+ G P D I++REDNEGAI + +N SS ++H+D++HH+ RN + GV+ I +V S QHADILTK
Sbjct: 208 GKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLLVALACKYDLEFLHFDIEQAFVQSELDHEVFMKLPPGCESMTGKVVRLDKSLYGLRQASRTFHKRLVSDLKRIGFEQSLSDPCVLHFMMGDEVLGMIAIHVDDILYAGI-ERLAEMVVEALGDSLPTKNLGEVRFFLGCAFARDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SLTNDYRSVIEDEGAGDVPFRDVVGSLMWIANQTRPDISNAVRAVARHSHEPNKSHWKAAQKILNYLLETAHLTLKYKQ-----DTMVDVGT--LVYVDADFASEATDRRSDSGA----LVLVADCLVAWISRTQKCVTLSTTEAEYVAMG-DGVKEALFVKGMLEFLRPSDRIGKIQVREDNEGAIALAENPLSSCNSKHIDVRHHLFRNLTEEGVLEIRHVSSEGQHADILTK 642 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1088.714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1088.714.1 >prot_H-elongata_contig1088.714.1 ID=prot_H-elongata_contig1088.714.1|Name=mRNA_H-elongata_contig1088.714.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=301bp MVMGMIVALGWEARQLDVDMAYLEAYLEEDIYVELPEAYRDSRKQVGLLKback to top mRNA from alignment at H-elongata_contig1088:1361..2716+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1088.714.1 ID=mRNA_H-elongata_contig1088.714.1|Name=mRNA_H-elongata_contig1088.714.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1356bp|location=Sequence derived from alignment at H-elongata_contig1088:1361..2716+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1088:1361..2716+ >mRNA_H-elongata_contig1088.714.1 ID=mRNA_H-elongata_contig1088.714.1|Name=mRNA_H-elongata_contig1088.714.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1806bp|location=Sequence derived from alignment at H-elongata_contig1088:1361..2716+ (Himanthalia elongata Himel1 dioecious)back to top |