mRNA_H-elongata_contig1088.714.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1088.714.1
Unique NamemRNA_H-elongata_contig1088.714.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1088.714.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 265 bits (678), Expect = 4.000e-75
Identity = 159/455 (34.95%), Postives = 243/455 (53.41%), Query Frame = 1
Query:    7 FKQKLDKDGRIEKYKYCLVAQGFRQVKCIHYEESSSPTPAQASIRMVMGMIVALGWEARQLDVDMAYLEAYLEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHARLLWSKPFGIELEAKGFQRSQADPCVFRRILHGIVAVVIVVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEAFYYLGCHITQDQNAGTLKFDQHQYIQTMAEHFGVTKTNIIPSVAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHHLAKFNDNSGPTHWRAAQKALEYLWCPRDLGITYGEEPGEGDQV-ISVGRRRLQHLPGHASLSVGRGG---DYGCRGH*LVLTSAKGNDGGGVRIEIRRAG*DGKRVAIPTTGQGVHDPPID-VAIKIREDNEGAIKMVKNRFSSRRTRHVDIKHHIVRNAVDGGVVRIEYVRSGEQHADILTK 1356
            F  K +K+G+I+ +K  LVA+GF Q+  + Y  SSSP P+ ASI++++ +    G      DV  AY  A L+E+++++LP    D   ++   ++A+YGL  +   W       L   GF++ +ADPCVFR+++  +V ++IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I +D  AGTL+  Q  YI +M E F V  T+ IP+  G     K +        EE  + P RE +G++MW +T +RPD+SFA   +A+        HW A QK L YL   RDLGITY    G G  V +       +     + L+   GG    +G +   +V  S+          E   AG   K             P     +IK+ EDN+GAI +V+N  SS RT+H+D+++H +R     G + +++V + EQHAD+LTK
Sbjct:  788 FSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSS-------TEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTK 1227          
BLAST of mRNA_H-elongata_contig1088.714.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 265 bits (678), Expect = 8.080e-75
Identity = 159/455 (34.95%), Postives = 243/455 (53.41%), Query Frame = 1
Query:    7 FKQKLDKDGRIEKYKYCLVAQGFRQVKCIHYEESSSPTPAQASIRMVMGMIVALGWEARQLDVDMAYLEAYLEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHARLLWSKPFGIELEAKGFQRSQADPCVFRRILHGIVAVVIVVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEAFYYLGCHITQDQNAGTLKFDQHQYIQTMAEHFGVTKTNIIPSVAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHHLAKFNDNSGPTHWRAAQKALEYLWCPRDLGITYGEEPGEGDQV-ISVGRRRLQHLPGHASLSVGRGG---DYGCRGH*LVLTSAKGNDGGGVRIEIRRAG*DGKRVAIPTTGQGVHDPPID-VAIKIREDNEGAIKMVKNRFSSRRTRHVDIKHHIVRNAVDGGVVRIEYVRSGEQHADILTK 1356
            F  K +K+G+I+ +K  LVA+GF Q+  + Y  SSSP P+ ASI++++ +    G      DV  AY  A L+E+++++LP    D   ++   ++A+YGL  +   W       L   GF++ +ADPCVFR+++  +V ++IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I +D  AGTL+  Q  YI +M E F V  T+ IP+  G     K +        EE  + P RE +G++MW +T +RPD+SFA   +A+        HW A QK L YL   RDLGITY    G G  V +       +     + L+   GG    +G +   +V  S+          E   AG   K             P     +IK+ EDN+GAI +V+N  SS RT+H+D+++H +R     G + +++V + EQHAD+LTK
Sbjct: 1167 FSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSS-------TEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTK 1606          
BLAST of mRNA_H-elongata_contig1088.714.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 265 bits (678), Expect = 8.240e-75
Identity = 159/455 (34.95%), Postives = 243/455 (53.41%), Query Frame = 1
Query:    7 FKQKLDKDGRIEKYKYCLVAQGFRQVKCIHYEESSSPTPAQASIRMVMGMIVALGWEARQLDVDMAYLEAYLEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHARLLWSKPFGIELEAKGFQRSQADPCVFRRILHGIVAVVIVVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEAFYYLGCHITQDQNAGTLKFDQHQYIQTMAEHFGVTKTNIIPSVAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHHLAKFNDNSGPTHWRAAQKALEYLWCPRDLGITYGEEPGEGDQV-ISVGRRRLQHLPGHASLSVGRGG---DYGCRGH*LVLTSAKGNDGGGVRIEIRRAG*DGKRVAIPTTGQGVHDPPID-VAIKIREDNEGAIKMVKNRFSSRRTRHVDIKHHIVRNAVDGGVVRIEYVRSGEQHADILTK 1356
            F  K +K+G+I+ +K  LVA+GF Q+  + Y  SSSP P+ ASI++++ +    G      DV  AY  A L+E+++++LP    D   ++   ++A+YGL  +   W       L   GF++ +ADPCVFR+++  +V ++IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I +D  AGTL+  Q  YI +M E F V  T+ IP+  G     K +        EE  + P RE +G++MW +T +RPD+SFA   +A+        HW A QK L YL   RDLGITY    G G  V +       +     + L+   GG    +G +   +V  S+          E   AG   K             P     +IK+ EDN+GAI +V+N  SS RT+H+D+++H +R     G + +++V + EQHAD+LTK
Sbjct: 1187 FSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSS-------TEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTK 1626          
BLAST of mRNA_H-elongata_contig1088.714.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 265 bits (678), Expect = 8.380e-75
Identity = 159/455 (34.95%), Postives = 243/455 (53.41%), Query Frame = 1
Query:    7 FKQKLDKDGRIEKYKYCLVAQGFRQVKCIHYEESSSPTPAQASIRMVMGMIVALGWEARQLDVDMAYLEAYLEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHARLLWSKPFGIELEAKGFQRSQADPCVFRRILHGIVAVVIVVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEAFYYLGCHITQDQNAGTLKFDQHQYIQTMAEHFGVTKTNIIPSVAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHHLAKFNDNSGPTHWRAAQKALEYLWCPRDLGITYGEEPGEGDQV-ISVGRRRLQHLPGHASLSVGRGG---DYGCRGH*LVLTSAKGNDGGGVRIEIRRAG*DGKRVAIPTTGQGVHDPPID-VAIKIREDNEGAIKMVKNRFSSRRTRHVDIKHHIVRNAVDGGVVRIEYVRSGEQHADILTK 1356
            F  K +K+G+I+ +K  LVA+GF Q+  + Y  SSSP P+ ASI++++ +    G      DV  AY  A L+E+++++LP    D   ++   ++A+YGL  +   W       L   GF++ +ADPCVFR+++  +V ++IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I +D  AGTL+  Q  YI +M E F V  T+ IP+  G     K +        EE  + P RE +G++MW +T +RPD+SFA   +A+        HW A QK L YL   RDLGITY    G G  V +       +     + L+   GG    +G +   +V  S+          E   AG   K             P     +IK+ EDN+GAI +V+N  SS RT+H+D+++H +R     G + +++V + EQHAD+LTK
Sbjct: 1330 FSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSS-------TEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTK 1769          
BLAST of mRNA_H-elongata_contig1088.714.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 1.330e-69
Identity = 155/455 (34.07%), Postives = 237/455 (52.09%), Query Frame = 1
Query:   16 KLDKDGRIEKYKYCLVAQGFRQVKCIHYEESSSPTPAQASIRMVMGMIVALGWEARQLDVDMAYLEAYLEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHARLLWSKPFGIELEAKGFQRSQADPCVFRRILHGIVAVVIVVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEAFYYLGCHITQDQNAGTLKFDQHQYIQTMAEHFGVTKTNIIPSVAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHHLAKFNDNSGPTHWRAAQKALEYLWCPRDLGITYGEEPGEGDQVI-------SVGRRRLQHLPGHASLSVGRGGDYGCRGH*LVLTSAKGNDGGGVRIEIRRAG*DGKRVAIPTTGQGVHDPPI-DVAIKIREDNEGAIKMVKNRFSSRRTRHVDIKHHIVRNAVDGGVVRIEYVRSGEQHADILTK 1356
            K +K+G+I+  K   VA+GF Q+  I    SSSP P+ ASI++++ +    G      DV  AY  A L+E+++++LP    D   ++   ++A+YGL  +   W       L   GF++ +ADPCVFR+++  +V ++IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++ GC I +D +AGTL+  Q  YI +M E F V  T+ IP+  G     K +        ++  + P RE VG++MW +T +RPD+SFA   +A+        HW A QK L YL   RDLGITY    G G  V        +  RR +  L   A+   G    +G +   +V  S+          E   AG   K             P     +I++ EDN+GAI +V+N  SS   +H+D++ H +R     G   +++V + EQHADILT+
Sbjct:  382 KTNKEGKIDTLKARRVARGFSQITSIISIPSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------DKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDARYADTEDRRSVSRL---ATTVGGTVVSHGSKARSIVSLSS-------TEAEYIAAGEGVKEALFVRAVLSFVAPETRGSSIQVLEDNQGAIALVQNPLSSGGMKHIDVRFHFIRGLFRSGDTSVKFVPTTEQHADILTQ 818          
BLAST of mRNA_H-elongata_contig1088.714.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL)

HSP 1 Score: 234 bits (598), Expect = 4.220e-68
Identity = 154/465 (33.12%), Postives = 239/465 (51.40%), Query Frame = 1
Query:    4 VFKQKLDKDGRIEKYKYCLVAQGFRQVKCIHYEESSSPTPAQASIRMVMGMIVALGWEARQLDVDMAYLEAYLEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHARLLWSKPFGIELEAKGFQRSQADPCVFRRILHGIVAVVIVVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEAFYYLGCHITQDQNAGTLKFDQHQYIQTMAEHFGVTKTNIIPSVAGGKA-LSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHHLAKFNDNSGPTHWRAAQKALEYLWCPRDLGITYGEEPGEGDQVISVGRRRLQHLPGHASLS----VGRGGDYGCRGH*LVLTSAKGNDGGGVRIEIRRAG*DGKRVAIPTTGQGV-------HDPPIDVA--IKIREDNEGAIKMVKNRFSSRRTRHVDIKHHIVRNAVDGGVVRIEYVRSGEQHADILTK 1356
            VF +K ++ G I ++K  LVA GF Q+  + + E+ +   +  SIR+ + +  A G+   QLDVD A+L A L+ED+Y+E PE  +    +V  L KA+YGL  A   W K     L   GF+   +D C++     G     I +YVDD++V   T+   ++  + + + F IK+LG   + LG  I  D+    L  +Q  Y++T+ E F       + +       LSK+D P+ D +  EM + PYR ++G L + A  TRPDI+FA  HL++F +N GP HW AA + L YL   RD GI+YG +  E   V+         +    S+S    +  GG         ++  AK       +  +  +  + + +A+   GQ V       HD  I++   I++ EDN+GAI +  N     RT+H+DI+HH VR+ V   V+++ YV +  Q ADILTK
Sbjct:   43 VFAKKFNEHGDILRWKARLVALGFLQLFGVDFFETYAAVASMGSIRIFLSVCCAAGYILEQLDVDTAFLNADLKEDVYIEPPEGLKVDGDRVLKLNKALYGLKQAGNAWFKTIHGALIDLGFKPCGSDTCIYVGRAGGDTT-YICLYVDDMVVGGRTQTRVDEVKKLIAARFRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSLKLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPVVFCDADWGTSVDDRRSVSGLVIMMNGGP--------IVFKAK------YQSTVALSSSEAEYLALSLCGQEVMWVRTMLHDLGINIKKPIQVWEDNQGAIALAHNAGYHARTKHIDIRHHYVRDLVADSVIKLSYVETQRQLADILTK 492          
BLAST of mRNA_H-elongata_contig1088.714.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 4.560e-68
Identity = 147/449 (32.74%), Postives = 231/449 (51.45%), Query Frame = 1
Query:    7 FKQKLDKDGRIEKYKYCLVAQGFRQVKCIHYEESSSPTPAQASIRMVMGMIVALGWEARQLDVDMAYLEAYLEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHARLLWSKPFGIELEAKGFQRSQADPCVFRRILHGIVAVVIVVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEAFYYLGCHITQDQNAGTLKFDQHQYIQTMAEHFGVTKTNIIPSVAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHHLAKFNDNSGPTHWRAAQKALEYLWCPRDLGITYGEEPGEGDQV-ISVGRRRLQHLPGHASLSVGRGG---DYGCRGH*LVLTSAKGNDGGGVRIEIRRAG*DGKRVAIPTTGQGVHDPPIDVAIKIREDNEGAIKMVKNRFSSRRTRHVDIKHHIVRNAVDGGVVRIEYVRSGEQHA 1341
            F  K +K+G+I+ +K  LVA+GF Q+  + Y  SSSP P+ ASI++++ +    G      DV  AY  A L+E+++++LP    D   ++   ++A+YGL  +   W       L   GF++ +ADPCVFR+++  +V ++IV+YVDD+LVA + + D E+ +  L   FP K+L E  ++ GC I +D   GTL+  Q  YI +M + F V  T+ IP+  G     K D        E+  + P RE +G++MW +T +RPD+SFA   +A+        HW A QK L YL   RDLGITY    G G  V +       +     + L+   GG    +G +   +V  S+          E   AG   K             P    +     DN+GA+ +V+N  SS RT+H+D++ H +R     G + ++++ + EQHA
Sbjct:  342 FSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDD-------EKGGEWPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTXXXXXXTEAEYFTAGECVKEALFVRAVLSFVAPETSGSSIQVLDNQGAMALVQNPLSSGRTKHIDVRFHFIRVLFRSGDISVKFIPTTEQHA 782          
BLAST of mRNA_H-elongata_contig1088.714.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 7.310e-68
Identity = 160/464 (34.48%), Postives = 245/464 (52.80%), Query Frame = 1
Query:    4 VFKQKLDKDGRIEKYKYCLVAQGFRQVKCIHYEESSSPTPAQASIRMVMGMIVALGWEARQLDVDMAYLEAYLEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHARLLWSKPFGIELEAKGFQRSQADPCVFRRILHGIVAVVIVVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEAFYYLGCHITQDQNAGTLKFDQHQYIQTMAEHFGVTKTNIIPSVAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHHLAKFNDNSGPTHWRAAQKALEYLWCPRDLGITYGEEPGEGDQVISVGRRRLQHLPGH-ASLSVGRGGDYGCRGH*LVLTSA----------KGNDGGGVRIEIRRAG*DGKRVAIPTTG--QGVHDPPIDVAIKIREDNEGAIKMVKNRFSSRRTRHVDIKHHIVRNAVDGGVVRIEYVRSGEQHADILTK 1356
            VFK K D+ G+I K K  LVA+GF+Q   + Y E+ SPT   ASIR+V+ +      E   LD++ A+ ++ L+ ++ ++LP        ++  L K++YGL  A   + K    +L   GF++S +DPCV R ++   V  +I ++VDD+L A  TKR  E  V  L    P K+LGE  ++LGC  ++D+ AGT++  Q  YI+++ E F + +T+ IP+       S ++  ++  E EE   +P+RE+VG LMW A  TRP+ S A   +A+ +     + W+AAQK L YL     L + Y +     D  + VG   L ++    AS +  R    G     LVL +           K         E    G DG + A+   G  Q +        I + EDNEGAI + +N  SS R++H+D++HH +RN  + GV+ + +V S EQHADILTK
Sbjct:  263 VFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAG-TKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPA-------SPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQ-----DTTVDVGT--LVYVDADFASKATDRRSVSGA----LVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMG-DGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTK 706          
BLAST of mRNA_H-elongata_contig1088.714.1 vs. uniprot
Match: A0A6A3NEQ7_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NEQ7_9STRA)

HSP 1 Score: 234 bits (597), Expect = 1.190e-66
Identity = 154/452 (34.07%), Postives = 224/452 (49.56%), Query Frame = 1
Query:    4 VFKQKLDKDGRIEKYKYCLVAQGFRQVKCIHYEESSSPTPAQASIRMVMGMIVALGWEARQLDVDMAYLEAYLEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHARLLWSKPFGIELEAKGFQRSQADPCVF-RRILHGIVAVVIVVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEAFYYLGCHITQDQNAGTLKFDQHQYIQTMAEHFGVTKTNIIPS-VAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHHLAKFNDNSGPTHWRAAQKALEYLWCPRDLGITYGEEPGEGDQVISVGRRRLQHLPGHASLSVGRGGDYGCRGH*LVLTSAKGNDGGGVRIEIRRAG*DGKRVAIPTTGQGVHDPPIDVAIKIREDNEGAIKMVKNRFSSRRTRHVDIKHHIVRNAVDGGVVRIEYVRSGEQHADILT 1353
            VF +K D+ GR+ +YK  LV +GF+Q   I + E+ SP     SIR+V+ +  A  +   QLD D A+L + L++ +Y+E+P    ++R     L KA+YG   A   W+K         GF+    D CV+ +R  +G + V +  Y DD+++A+ T  D  +    L + F +K+LG A + LG  I  D  AGT    Q +YI  + E FG      + +  A G  LSK+ SP TDAE   MR  PYR ++G L++  T TRPDI+F    L++F +N G  HW AA + L YL  PR LG+ Y      G Q ++              L V    D+G         S       GV + I  A    K     T      +        I EDN+ AI + +N     RT+HVDI+HH ++  V+ G V+++YV +  Q ADILT
Sbjct:  223 VFAEKRDQYGRVVRYKARLVTKGFKQKYGIDFFETYSPVAYMNSIRVVLSVCAAYEYRMEQLDADTAFLNSGLKDRVYMEVPFGIENARDYQCQLNKAIYGSEQAASAWNKTIHRVCLGNGFKSCGVDQCVYVKRSKNGFIYVCL--YDDDMIIAAKTSEDIREVKDALKNAFKMKELGPAKFILGMEIDHDMTAGTHNIKQTRYIDDVVERFGQENAKPVDNPCAAGLKLSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFVVTQLSRFLENPGQQHWNAAVRVLRYLKSPRQLGMVYQG----GTQSVT--------------LMVYSDADWGTNLDDRCAPS-------GVMVMIGNAPVVFKPKFQRTVTLSSAEAEYMALSLIWEDNQAAIALAQNAGYHARTKHVDIRHHFIKENVERGTVKVQYVDTKNQLADILT 647          
BLAST of mRNA_H-elongata_contig1088.714.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 2.250e-66
Identity = 155/455 (34.07%), Postives = 242/455 (53.19%), Query Frame = 1
Query:   31 GRIEKYKYCLVAQGFRQVKCIHYEESSSPTPAQASIRMVMGMIVALGWEARQLDVDMAYLEAYLEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHARLLWSKPFGIELEAKGFQRSQADPCVFRRILHGIVAVVIVVYVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEAFYYLGCHITQDQNAGTLKFDQHQYIQTMAEHFGVTKTNIIPSVAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHHLAKFNDNSGPTHWRAAQKALEYLWCPRDLGITYGEEPGEGDQVISVGRRRLQHLPGH-ASLSVGRGGDYGCRGH*LVLTS----------AKGNDGGGVRIEIRRAG*DGKRVAIPTTGQGVHDPPIDVA--IKIREDNEGAIKMVKNRFSSRRTRHVDIKHHIVRNAVDGGVVRIEYVRSGEQHADILTK 1356
            G+I K K  LVA+GF+Q   + Y E+ SPT   ASIR+++ +      E    D++ A++++ L+ +++++LP        +V  L K++YGL  A   + K    +L+  GF++S +DPCV   ++   V  +I ++VDD+L A   +R  E  V  L    P K+LGE  ++LGC   +D+ AGT++  Q  YI+++ E F V +T+ IP+       S ++  ++  E E    +P+R++VG+LMW A  TRPDIS A   +A+ +     +HW+AAQK L YL     L + Y +     D ++ VG   L ++    AS +  R  D G     LVL +           K         E    G DG + A+   G      P D    I++REDNEGAI + +N  SS  ++H+D++HH+ RN  + GV+ I +V S  QHADILTK
Sbjct:  208 GKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLLVALACKYDLEFLHFDIEQAFVQSELDHEVFMKLPPGCESMTGKVVRLDKSLYGLRQASRTFHKRLVSDLKRIGFEQSLSDPCVLHFMMGDEVLGMIAIHVDDILYAGI-ERLAEMVVEALGDSLPTKNLGEVRFFLGCAFARDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SLTNDYRSVIEDEGAGDVPFRDVVGSLMWIANQTRPDISNAVRAVARHSHEPNKSHWKAAQKILNYLLETAHLTLKYKQ-----DTMVDVGT--LVYVDADFASEATDRRSDSGA----LVLVADCLVAWISRTQKCVTLSTTEAEYVAMG-DGVKEALFVKGMLEFLRPSDRIGKIQVREDNEGAIALAENPLSSCNSKHIDVRHHLFRNLTEEGVLEIRHVSSEGQHADILTK 642          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1088.714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSG8_9PHAE4.000e-7534.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE8.080e-7534.95Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE8.240e-7534.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE8.380e-7534.95Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JQN6_9PHAE1.330e-6934.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8K1CTN1_PYTOL4.220e-6833.12Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]
A0A6H5JC10_9PHAE4.560e-6832.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE7.310e-6834.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3NEQ7_9STRA1.190e-6634.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KN43_9PHAE2.250e-6634.07Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1088contigH-elongata_contig1088:1361..2716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.2
Seed ortholog evalue1.2e-38
Seed eggNOG ortholog67593.Physo133076
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1356
Cds size903
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1088.714.1prot_H-elongata_contig1088.714.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1088 1502..2404 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929615.3809862-UTR-H-elongata_contig1088:1360..15011622929615.3809862-UTR-H-elongata_contig1088:1360..1501Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1088 1361..1501 +
1691679092.2325814-UTR-H-elongata_contig1088:1360..15011691679092.2325814-UTR-H-elongata_contig1088:1360..1501Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1088 1361..1501 +
1622929615.4133713-UTR-H-elongata_contig1088:2404..27161622929615.4133713-UTR-H-elongata_contig1088:2404..2716Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1088 2405..2716 +
1691679092.2685506-UTR-H-elongata_contig1088:2404..27161691679092.2685506-UTR-H-elongata_contig1088:2404..2716Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1088 2405..2716 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929615.396671-CDS-H-elongata_contig1088:1501..24041622929615.396671-CDS-H-elongata_contig1088:1501..2404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1088 1502..2404 +
1691679092.2495873-CDS-H-elongata_contig1088:1501..24041691679092.2495873-CDS-H-elongata_contig1088:1501..2404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1088 1502..2404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1088.714.1

>prot_H-elongata_contig1088.714.1 ID=prot_H-elongata_contig1088.714.1|Name=mRNA_H-elongata_contig1088.714.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=301bp
MVMGMIVALGWEARQLDVDMAYLEAYLEEDIYVELPEAYRDSRKQVGLLK
KAMYGLVHARLLWSKPFGIELEAKGFQRSQADPCVFRRILHGIVAVVIVV
YVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEAFYYLGCHITQDQNAGT
LKFDQHQYIQTMAEHFGVTKTNIIPSVAGGKALSKSDSPQTDAEVEEMRQ
IPYREIVGALMWAATMTRPDISFAAHHLAKFNDNSGPTHWRAAQKALEYL
WCPRDLGITYGEEPGEGDQVISVGRRRLQHLPGHASLSVGRGGDYGCRGH
*
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mRNA from alignment at H-elongata_contig1088:1361..2716+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1088.714.1 ID=mRNA_H-elongata_contig1088.714.1|Name=mRNA_H-elongata_contig1088.714.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1356bp|location=Sequence derived from alignment at H-elongata_contig1088:1361..2716+ (Himanthalia elongata Himel1 dioecious)
GTAGTTTTCAAGCAAAAACTCGACAAGGATGGAAGGATCGAGAAGTATAA ATATTGTCTCGTGGCGCAGGGTTTCAGGCAGGTCAAATGCATACACTACG AGGAATCCTCCTCTCCGACTCCTGCGCAGGCCAGCATTAGAATGGTAATG GGCATGATCGTGGCTCTCGGCTGGGAGGCGCGGCAGCTGGACGTCGACAT GGCCTACCTTGAGGCCTACCTGGAGGAAGATATCTACGTTGAGCTCCCGG AGGCATACCGTGACTCCAGGAAGCAAGTCGGCCTACTAAAGAAAGCAATG TACGGACTCGTCCACGCCAGGCTGCTGTGGTCAAAACCGTTCGGGATCGA GCTCGAGGCGAAGGGTTTTCAGAGATCTCAAGCCGATCCATGCGTGTTCC GGCGGATTCTCCACGGGATAGTGGCAGTCGTCATTGTGGTCTACGTCGAC GACCTGCTGGTTGCTAGTGCGACGAAACGTGACGAGGAGCAAGCGGTGAG GGACCTGTGCTCCTGTTTCCCCATCAAGGATCTGGGGGAGGCTTTCTATT ACCTGGGATGCCACATCACGCAGGACCAGAACGCCGGGACACTGAAGTTC GACCAGCATCAGTACATACAGACTATGGCGGAACATTTTGGCGTGACGAA GACCAACATTATTCCGTCCGTGGCAGGAGGGAAAGCCCTTTCGAAATCAG ACAGCCCGCAAACGGACGCAGAGGTTGAAGAAATGCGCCAGATTCCCTAC CGAGAAATCGTTGGGGCCTTAATGTGGGCAGCGACGATGACCAGGCCCGA CATTTCATTCGCTGCGCACCATCTGGCGAAATTCAACGACAACTCGGGAC CGACACACTGGAGGGCAGCCCAGAAAGCGCTGGAATATTTATGGTGCCCT CGGGACCTCGGGATCACCTACGGAGAGGAACCGGGGGAGGGGGACCAAGT TATCAGCGTGGGTCGACGCAGACTACAGCACCTGCCCGGACACGCGTCGC TCAGTGTCGGGAGGGGCGGTGATTATGGCTGCCGGGGCCATTAGTTGGTT CTCACGAGTGCAAAAGGTAACGATGGTGGCGGCGTCCGAATCGAAATACG TCGCGCTGGCTGAGATGGTAAACGAGTTGCGATTCCTACGACAGGTCAAG GAGTTCATGACCCCCCAATCGACGTCGCCATCAAGATACGCGAGGACAAC GAAGGCGCAATCAAGATGGTGAAAAACCGTTTCAGCAGTCGACGAACGAG GCACGTGGACATCAAGCATCACATTGTCCGCAACGCGGTCGATGGGGGGG TGGTTCGCATAGAATACGTTCGGTCTGGGGAACAGCACGCCGACATCCTC ACGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig1088:1361..2716+

>mRNA_H-elongata_contig1088.714.1 ID=mRNA_H-elongata_contig1088.714.1|Name=mRNA_H-elongata_contig1088.714.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1806bp|location=Sequence derived from alignment at H-elongata_contig1088:1361..2716+ (Himanthalia elongata Himel1 dioecious)
ATGGTAATGGGCATGATCGTGGCTCTCGGCTGGGAGGCGCGGCAGCTGGA
CGTCGACATGGCCTACCTTGAGGCCTACCTGGAGGAAGATATCTACGTTG
AGCTCCCGGAGGCATACCGTGACTCCAGGAAGCAAGTCGGCCTACTAAAG
AAAGCAATGTACGGACTCGTCCACGCCAGGCTGCTGTGGTCAAAACCGTT
CGGGATCGAGCTCGAGGCGAAGGGTTTTCAGAGATCTCAAGCCGATCCAT
GCGTGTTCCGGCGGATTCTCCACGGGATAGTGGCAGTCGTCATTGTGGTC
TACGTCGACGACCTGCTGGTTGCTAGTGCGACGAAACGTGACGAGGAGCA
AGCGGTGAGGGACCTGTGCTCCTGTTTCCCCATCAAGGATCTGGGGGAGG
CTTTCTATTACCTGGGATGCCACATCACGCAGGACCAGAACGCCGGGACA
CTGAAGTTCGACCAGCATCAGTACATACAGACTATGGCGGAACATTTTGG
CGTGACGAAGACCAACATTATTCCGTCCGTGGCAGGAGGGAAAGCCCTTT
CGAAATCAGACAGCCCGCAAACGGACGCAGAGGTTGAAGAAATGCGCCAG
ATTCCCTACCGAGAAATCGTTGGGGCCTTAATGTGGGCAGCGACGATGAC
CAGGCCCGACATTTCATTCGCTGCGCACCATCTGGCGAAATTCAACGACA
ACTCGGGACCGACACACTGGAGGGCAGCCCAGAAAGCGCTGGAATATTTA
TGGTGCCCTCGGGACCTCGGGATCACCTACGGAGAGGAACCGGGGGAGGG
GGACCAAGTTATCAGCGTGGGTCGACGCAGACTACAGCACCTGCCCGGAC
ACGCGTCGCTCAGTGTCGGGAGGGGCGGTGATTATGGCTGCCGGGGCCAT
TAGATGGTAATGGGCATGATCGTGGCTCTCGGCTGGGAGGCGCGGCAGCT
GGACGTCGACATGGCCTACCTTGAGGCCTACCTGGAGGAAGATATCTACG
TTGAGCTCCCGGAGGCATACCGTGACTCCAGGAAGCAAGTCGGCCTACTA
AAGAAAGCAATGTACGGACTCGTCCACGCCAGGCTGCTGTGGTCAAAACC
GTTCGGGATCGAGCTCGAGGCGAAGGGTTTTCAGAGATCTCAAGCCGATC
CATGCGTGTTCCGGCGGATTCTCCACGGGATAGTGGCAGTCGTCATTGTG
GTCTACGTCGACGACCTGCTGGTTGCTAGTGCGACGAAACGTGACGAGGA
GCAAGCGGTGAGGGACCTGTGCTCCTGTTTCCCCATCAAGGATCTGGGGG
AGGCTTTCTATTACCTGGGATGCCACATCACGCAGGACCAGAACGCCGGG
ACACTGAAGTTCGACCAGCATCAGTACATACAGACTATGGCGGAACATTT
TGGCGTGACGAAGACCAACATTATTCCGTCCGTGGCAGGAGGGAAAGCCC
TTTCGAAATCAGACAGCCCGCAAACGGACGCAGAGGTTGAAGAAATGCGC
CAGATTCCCTACCGAGAAATCGTTGGGGCCTTAATGTGGGCAGCGACGAT
GACCAGGCCCGACATTTCATTCGCTGCGCACCATCTGGCGAAATTCAACG
ACAACTCGGGACCGACACACTGGAGGGCAGCCCAGAAAGCGCTGGAATAT
TTATGGTGCCCTCGGGACCTCGGGATCACCTACGGAGAGGAACCGGGGGA
GGGGGACCAAGTTATCAGCGTGGGTCGACGCAGACTACAGCACCTGCCCG
GACACGCGTCGCTCAGTGTCGGGAGGGGCGGTGATTATGGCTGCCGGGGC
CATTAG
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