mRNA_H-elongata_contig10864.702.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10864.702.1
Unique NamemRNA_H-elongata_contig10864.702.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10864.702.1 vs. uniprot
Match: A0A6H5KSX3_9PHAE (ATP-grasp domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSX3_9PHAE)

HSP 1 Score: 328 bits (841), Expect = 2.430e-105
Identity = 185/303 (61.06%), Postives = 214/303 (70.63%), Query Frame = 1
Query:    1 MSAFE-------AGESDAPTAGVIVVDPFCDYLGKRCMEILEGAGYAVVISEHLVSTMGREGAERFRPPAPGGEAEWAAWLPFPLLGVFCESDAGLATAERLQAALLGPRFGGVNEARRDKYLMNEKVRKAGLMAVRQTKTGDWSKARHFLSTLE------PSSPVRSIPPSLSKPPGSRENPSQGGLKGESIRP---KKPATPLGPGKIKG--GREEAVTASDGR-PGKEVASVVKPARGCASGNVFLCRGEGEAREAFYKILGTPKYGTPGAVNDEVVLQEFLVGTEWVVDTVSRDGNHKA 852
            MSAFE       A E  AP AGVIVVDPFCDYLGKRC++ILE AGYAVV+S+HLV+T+  + A+ FRPP+PG EAEWA+WLPFP++ V CESDAGLA AERLQAALLGPRFGG+N+ARRDK+LMNE +R AGL A RQ KTGD +K R FL+TLE      P +P R  P    +  G RE  +     G+   P   +     L   K  G  G E+     DG  PG  V SVVKPARGCASG+VF C+GE EA EAF KI GTPKYGTPG  NDEV++QEFLVGTE+VVDTVSRDG HKA
Sbjct:  105 MSAFEDAETGSEAEEGGAPVAGVIVVDPFCDYLGKRCIDILEEAGYAVVLSDHLVATLNSDSAKGFRPPSPGKEAEWASWLPFPIVAVVCESDAGLANAERLQAALLGPRFGGINDARRDKFLMNEAMRTAGLAAARQIKTGDRAKVRQFLATLETTTTASPPTPARQQPSQQLEQTGGREVAAD--TDGDLAAPTPEENSGNVLAEAKGLGSRGEEQEEDGGDGNSPG--VLSVVKPARGCASGSVFRCQGEHEAMEAFDKIFGTPKYGTPGEFNDEVLVQEFLVGTEYVVDTVSRDGEHKA 403          
BLAST of mRNA_H-elongata_contig10864.702.1 vs. uniprot
Match: W7TSP4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSP4_9STRA)

HSP 1 Score: 123 bits (308), Expect = 3.350e-28
Identity = 95/274 (34.67%), Postives = 134/274 (48.91%), Query Frame = 1
Query:   49 IVVDPFCDYLGKRCMEILEGAGYAV--VISEHLVSTMGREGAERFRPPAPGGEAEWAAWLP-FPLLG-VFCESDAGLATAERLQAALLGPRFGGVNEARRDKYLMNEKVRKAGLMAVRQTKTGDWSKARHFL-STLEPSSPVRSIP--PSLSKPPGSRENPSQGGLKGESIRPKKPATPLGPGKIKGGREEAVTASDGRPGKEVASVVKPARGCASGNVFLCRGEGEAREAFYKILGTPKYGTPGAVNDEVVLQEFLVGTEWVVDTVSRDGNHK 849
            +++DPF  +LG+      +  G     V+S + V+++ ++G  ++R P PG E +WAA LP F  +  V  ESD G ATAER+ AA+  P   GVN  RR+KYL N  ++  G+   RQ     W +A  F+ + L P+ P  SI   PS S                                               P     +VVKP RG ASG+V +C+     R AF  I  +PKYG  G VN +V+LQE+L+G E+ VDTVS +G+HK
Sbjct:  221 VIIDPFSPFLGRYLKRRAQAMGLVCIDVLSPYTVASL-QDGPRKWRAPWPGAEKKWAAHLPAFKRVAFVLSESDHGAATAERMHAAVGAP-GNGVNPTRRNKYLTNRALQARGVGYTRQILAETWEEAEAFVRNQLLPTHPTSSISATPSFSSXXXXXXXXXXXXXXXXXXXX---------------XXXXXXXXXXXPSSVPLAVVKPVRGAASGDVHVCQDLPSIRIAFQAIKDSPKYG--GGVNTQVLLQEYLLGEEFAVDTVSCNGSHK 475          
BLAST of mRNA_H-elongata_contig10864.702.1 vs. uniprot
Match: A0A7S3WCA1_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WCA1_EMIHU)

HSP 1 Score: 117 bits (292), Expect = 3.720e-27
Identity = 99/288 (34.38%), Postives = 119/288 (41.32%), Query Frame = 1
Query:   31 APTAGVIVVDPFCD---YLGKRCMEILEGAG----------YAVVISEHLVSTMGREGAERFRPPAPGGEAEWA--AWLPFPLLGVFCESDAGLATAERLQAALLGPRFGGVNEARRDKYLMNEKVRKAGLMAVRQTKTGDWSKARHFLSTLEPSSPVRSIPPSLSKPPGSRENPSQGGLKGESIRPKKPATPLGPGKIKGGREEAVTASDGRPGKEVASVVKPARGCASGNVFLCRGEGEAREAFYKILGTPKYGTPGAVNDEVVLQEFLVGTEWVVDTVSRDGNHK 849
            APT   ++   +CD   Y G+   E  E  G          YA ++SE L     R   +R   PA G EA WA  A     + GV C SDAGLATAERLQ AL+  R  G+  ARRDKYLM+E +R AGL A RQ+    W +AR FLSTL P  P+R                                                             V+KP RG A   V L   E +AR     +L   +           + QE L G EWVVDTVSR G HK
Sbjct:   44 APTGAALI---YCDPVGYEGRYFREACEARGVLLVRLWSTPYAAMLSEDLEDAEERAAIQRGCAPAAGEEAAWAESALSGMAITGVLCGSDAGLATAERLQHALVPARTNGLVPARRDKYLMHEALRTAGLAAARQSVVRSWEEARSFLSTLPP--PLR------------------------------------------------------------VVLKPRRGHAGLRVGLASSEPQARHMVETLLAE-RVSLDTEAEGGALCQEVLEGEEWVVDTVSRAGEHK 265          
BLAST of mRNA_H-elongata_contig10864.702.1 vs. uniprot
Match: R1F9Z0_EMIHU (ATP-grasp domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F9Z0_EMIHU)

HSP 1 Score: 117 bits (292), Expect = 2.470e-26
Identity = 99/288 (34.38%), Postives = 119/288 (41.32%), Query Frame = 1
Query:   31 APTAGVIVVDPFCD---YLGKRCMEILEGAG----------YAVVISEHLVSTMGREGAERFRPPAPGGEAEWA--AWLPFPLLGVFCESDAGLATAERLQAALLGPRFGGVNEARRDKYLMNEKVRKAGLMAVRQTKTGDWSKARHFLSTLEPSSPVRSIPPSLSKPPGSRENPSQGGLKGESIRPKKPATPLGPGKIKGGREEAVTASDGRPGKEVASVVKPARGCASGNVFLCRGEGEAREAFYKILGTPKYGTPGAVNDEVVLQEFLVGTEWVVDTVSRDGNHK 849
            APT   ++   +CD   Y G+   E  E  G          YA ++SE L     R   +R   PA G EA WA  A     + GV C SDAGLATAERLQ AL+  R  G+  ARRDKYLM+E +R AGL A RQ+    W +AR FLSTL P  P+R                                                             V+KP RG A   V L   E +AR     +L   +           + QE L G EWVVDTVSR G HK
Sbjct:   13 APTGAALI---YCDPVGYEGRYFREACEARGVLLVRLWSTPYAAMLSEDLEDAEERAAIQRGCAPAAGEEAAWAESALSGMAITGVLCGSDAGLATAERLQHALVPARTNGLVPARRDKYLMHEALRTAGLAAARQSVARSWEEARSFLSTLPP--PLR------------------------------------------------------------VVLKPRRGHAGLRVGLASSEPQARHMVETLLAE-RVSLDTEAEGGALCQEVLEGEEWVVDTVSRAGEHK 234          
BLAST of mRNA_H-elongata_contig10864.702.1 vs. uniprot
Match: A0A7S3V442_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V442_9STRA)

HSP 1 Score: 112 bits (280), Expect = 3.330e-24
Identity = 99/302 (32.78%), Postives = 138/302 (45.70%), Query Frame = 1
Query:   19 GESDAPTAGVIVVDPFCDY----LGKRCMEILEGAGYAVVISEHLVSTMGR--------EGAER------FRPPAPGGEAEWAAWLP--FPLLGVFCESDAGLATAERLQAALLGPRFGGVNEARRDKYLMNEKVRKAGLMAVRQTKTGDWSKARHFLSTLEPSSPVRSIPPSLSKPPGSRENPSQGGLKGESIRPKKPATPLGPGKIKGGREEAVTASDGRPGKEVAS----VVKPARGCASGNVFLCRGEGEAREAFYKILGTPKYG-TPGAVNDEVVLQEFLVGTEWVVDTVSRDGNHK 849
            G S  P   ++ +D FC+Y    L  +  ++  G     VIS ++   M R         G +        R P+P   ++W   LP    ++   CESD+GL  AE L  A+      G NEARRDK+LMNE   K GL  V+Q       +A  F + L     V    PSL     S E+ S   LK  S         +       GR    T+S  R  KE  S    ++KP RG AS +V  C    + + AF KI GT  +G T G  ++ V++QEF VGTE+ +D +S++G HK
Sbjct:  145 GASKPPKFALLFMDKFCNYHGGYLASKARDVY-GVATIDVISSYIAGYMLRAVNDDMESNGQDEQSSILSMRLPSPDQLSQWKQKLPRGIQIIAAICESDSGLGEAELLGDAISVRYHNGYNEARRDKFLMNEVAAKHGLRTVQQKLCASLDEANAFATELG----VGQSHPSLDYT--SEEDCSD--LKASSALSLSGTEDIRAENFNTGRLGGTTSSHHRLQKEDRSWKYCIIKPTRGVASDDVHFCSNLEQVKAAFEKIQGTSIFGSTSGERHNSVLVQEFAVGTEYAIDIISKNGEHK 437          
BLAST of mRNA_H-elongata_contig10864.702.1 vs. uniprot
Match: A0A7S4B789_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B789_CHRCT)

HSP 1 Score: 97.4 bits (241), Expect = 2.850e-19
Identity = 89/266 (33.46%), Postives = 107/266 (40.23%), Query Frame = 1
Query:   67 CDYLGKRCMEILEGAGYAVVISEHLVSTMGR-EGAERFRPPAPGGEAEWAAWL--PFPLLGVFCESDAGLATAERLQAALLGPRFGGVNEARRDKYLMNEKVRKAGLMAVRQTKTGDWSKARHFLSTLEPSSPVRSIPPSLSKPPGSRENPSQGGLKGESIRPKKPATPLGPGKIKGGREEAVTASDGRPGKEVASVVKPARGCASGNVFLCRGEGEAREAFYKILGTPKYGTPGAV-NDEVVLQEFLVGTEWVVDTVSRDGNHKA 852
            C+  G + ++ L  A YA +I   +V    + E       P    E EWA      FP+LGV C SDAGLATAERLQ  L   R  G+  ARRDK  MNE +  AGL    Q     W +A  FL+ L                                     PA PL                         +VVKP RG +S  V L     +AR     +L TP       V     +LQE+L G EWVVDTVSR G HKA
Sbjct:   53 CELQGLKTVQ-LWSAPYAEMIRNRMVLNDEQIEHLASHTAPPENFETEWAQQNLEEFPVLGVLCGSDAGLATAERLQHVLTPSRSNGILSARRDKLQMNEALSAAGLSTAAQASISSWEEAEAFLTAL-------------------------------------PA-PL------------------------HAVVKPRRGQSSLRVGLATSLSQARHMVNALLETPTSLDSSEVPRGSALLQEYLRGDEWVVDTVSRAGEHKA 255          
BLAST of mRNA_H-elongata_contig10864.702.1 vs. uniprot
Match: A0A7S1TTP0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTP0_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.850e-19
Identity = 89/285 (31.23%), Postives = 116/285 (40.70%), Query Frame = 1
Query:   46 VIVVDPFCDYLGKRCMEILE---GAGYAVVISEHLVSTMG-REGAE---RFRPPAP-GGE---------AEWAAWLPFPLLGVFCESDAGLATAERLQAALLGPRFGGVNEARRDKYLMNEKVRKAGLMAVRQTKTGDWSKARHFLSTLEPSSPVRSIPPSLSKPPGSRENPSQGGLKGESIRPKKPATPLGPGKIKGGREEAVTASDGRPGKEVASVVKPARGCASGNVFLCRGEGEAREAFYKILGTPKYGTPGAVNDEVVLQEFLVGTEWVVDTVSRDGNHK 849
            V++VD    Y G+  +E  E     G A V+S +L   +  R GAE    FR P P  GE           WAA  P P+  V C+SD+GLA AE   A L      GVNEARRDKYLM+E +R  GL    Q    D      F + L  S                                              GR                +++KP RG  S  V +C    E R AF  ++GT ++ +  A N E ++QEF+ G E+ VDTVS  G H+
Sbjct:   78 VVLVDALGGYHGRTLVERAEEEYNLGVATVLSPYLQRILEERNGAELPPHFRLPQPIRGENGDLNFAPVRRWAAAQP-PVRAVLCDSDSGLAAAEAFAAGLDSIPNNGVNEARRDKYLMHEALRARGLRCAEQRVCADVESCLEFCADLFAS----------------------------------------------GRR---------------AIMKPRRGVGSELVHVCETPAEVRAAFESLVGTAQFASLEARNREALVQEFIEGPEYAVDTVSAGGAHR 300          
BLAST of mRNA_H-elongata_contig10864.702.1 vs. uniprot
Match: A0A7S3WBL1_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WBL1_EMIHU)

HSP 1 Score: 90.1 bits (222), Expect = 3.290e-18
Identity = 62/145 (42.76%), Postives = 76/145 (52.41%), Query Frame = 1
Query:   31 APTAGVIVVDPFCD---YLGKRCMEILEGAG----------YAVVISEHLVSTMGREGAERFRPPAPGGEAEWA--AWLPFPLLGVFCESDAGLATAERLQAALLGPRFGGVNEARRDKYLMNEKVRKAGLMAVRQTKTGDWSKA 420
            APT   ++   +CD   Y G+   E  E  G          YA ++SE L     R   +R   PA G EA WA  A     + GV C SDAGLATAERLQ AL+  R  G+  ARRDKYLM+E +R AGL A RQ+    W +A
Sbjct:   44 APTGAALI---YCDPVGYEGRYFREACEARGVLLVRLWSTPYAAMLSEDLEDAEERAAIQRGCAPAAGEEAAWAESALSGMAITGVLCGSDAGLATAERLQHALVPARTNGLVPARRDKYLMHEALRTAGLAAARQSVVRSWEEA 185          
BLAST of mRNA_H-elongata_contig10864.702.1 vs. uniprot
Match: A0A835ZA87_9STRA (ATP-grasp domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA87_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 4.750e-18
Identity = 46/83 (55.42%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  604 VTASDGRPGKEVASVVKPARGCASGNVFLCRGEGEAREAFYKILGTPKYGTPGAVNDEVVLQEFLVGTEWVVDTVSRDGNHKA 852
              A+  R  +    V+KP RGCASG+VFLC  E EAR A   I+G+P Y TPGAVN E ++Q+FL G E+VVDTVS  G HKA
Sbjct:   32 AAAAGARDDRWAPLVIKPLRGCASGDVFLCATEVEARNALDTIVGSPLYATPGAVNREALVQDFLEGVEYVVDTVSCKGAHKA 114          
BLAST of mRNA_H-elongata_contig10864.702.1 vs. uniprot
Match: R1DSR1_EMIHU (ATP-grasp domain-containing protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DSR1_EMIHU)

HSP 1 Score: 91.3 bits (225), Expect = 3.270e-17
Identity = 81/230 (35.22%), Postives = 99/230 (43.04%), Query Frame = 1
Query:  184 PAPGGEAEWAAW-LPFP--LLGVFCESDAGLATAERLQAALLGPRFGGVNEARRDKYLMNEKVRKAGLMAVRQTKTGDWSKARHFLSTLEPSSPVRSIPPSLSKPPGSRENPSQGGLKGESIRPKKPATPLGPGKIKGGREEAVTASDGRPGKEVASVVKPARGCASGNVFLCRGEGEAREAFYKILGTPKYGTPGAVNDEV----VLQEFLVGTEWVVDTVSRDGNHKA 852
            P  G E  WA+  LP    L GV C S+AGL+TAER+QAAL+  R  GV  ARRDK LMN  +   GL+        DW                   PP+   PP S +               +PA       ++G R                 V+KP RG     V L   E  AR AF  +        P + +DEV    +LQE+L G EWVVDT SRDG HKA
Sbjct:   79 PKNGEEVAWASSRLPAGTCLGGVLCGSEAGLSTAERMQAALVPERSNGVCPARRDKLLMNRALAGHGLLTAATASPSDWRP-----------------PPAAIHPPDSSKL--------------QPAAEAFIRSLRGNRV----------------VLKPRRGTGGCGVALACDEAHARRAFEALQA------PFSPDDEVAAAPLLQEYLAGEEWVVDTASRDGEHKA 255          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10864.702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSX3_9PHAE2.430e-10561.06ATP-grasp domain-containing protein n=2 Tax=Ectoca... [more]
W7TSP4_9STRA3.350e-2834.67Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S3WCA1_EMIHU3.720e-2734.38Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
R1F9Z0_EMIHU2.470e-2634.38ATP-grasp domain-containing protein n=2 Tax=Emilia... [more]
A0A7S3V442_9STRA3.330e-2432.78Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A7S4B789_CHRCT2.850e-1933.46Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A7S1TTP0_9STRA4.850e-1931.23Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3WBL1_EMIHU3.290e-1842.76Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A835ZA87_9STRA4.750e-1855.42ATP-grasp domain-containing protein n=1 Tax=Tribon... [more]
R1DSR1_EMIHU3.270e-1735.22ATP-grasp domain-containing protein n=3 Tax=Emilia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10864contigH-elongata_contig10864:1885..4123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score317.4
Seed ortholog evalue6.9e-84
Seed eggNOG ortholog2880.D7FY34
EggNOG free text desc.ATP-grasp domain
EggNOG OGs2S0EE@2759,COG0439@1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size861
Cds size861
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10864.702.1prot_H-elongata_contig10864.702.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10864 1885..4123 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929614.3186822-CDS-H-elongata_contig10864:1884..20071622929614.3186822-CDS-H-elongata_contig10864:1884..2007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10864 1885..2007 +
1691679091.7925544-CDS-H-elongata_contig10864:1884..20071691679091.7925544-CDS-H-elongata_contig10864:1884..2007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10864 1885..2007 +
1622929614.3399215-CDS-H-elongata_contig10864:2323..24771622929614.3399215-CDS-H-elongata_contig10864:2323..2477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10864 2324..2477 +
1691679091.804133-CDS-H-elongata_contig10864:2323..24771691679091.804133-CDS-H-elongata_contig10864:2323..2477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10864 2324..2477 +
1622929614.3606575-CDS-H-elongata_contig10864:2978..34781622929614.3606575-CDS-H-elongata_contig10864:2978..3478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10864 2979..3478 +
1691679091.8149133-CDS-H-elongata_contig10864:2978..34781691679091.8149133-CDS-H-elongata_contig10864:2978..3478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10864 2979..3478 +
1622929614.3790247-CDS-H-elongata_contig10864:4039..41231622929614.3790247-CDS-H-elongata_contig10864:4039..4123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10864 4040..4123 +
1691679091.8231268-CDS-H-elongata_contig10864:4039..41231691679091.8231268-CDS-H-elongata_contig10864:4039..4123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10864 4040..4123 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10864.702.1

>prot_H-elongata_contig10864.702.1 ID=prot_H-elongata_contig10864.702.1|Name=mRNA_H-elongata_contig10864.702.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=287bp
MSAFEAGESDAPTAGVIVVDPFCDYLGKRCMEILEGAGYAVVISEHLVST
MGREGAERFRPPAPGGEAEWAAWLPFPLLGVFCESDAGLATAERLQAALL
GPRFGGVNEARRDKYLMNEKVRKAGLMAVRQTKTGDWSKARHFLSTLEPS
SPVRSIPPSLSKPPGSRENPSQGGLKGESIRPKKPATPLGPGKIKGGREE
AVTASDGRPGKEVASVVKPARGCASGNVFLCRGEGEAREAFYKILGTPKY
GTPGAVNDEVVLQEFLVGTEWVVDTVSRDGNHKACI*
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mRNA from alignment at H-elongata_contig10864:1885..4123+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10864.702.1 ID=mRNA_H-elongata_contig10864.702.1|Name=mRNA_H-elongata_contig10864.702.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2239bp|location=Sequence derived from alignment at H-elongata_contig10864:1885..4123+ (Himanthalia elongata Himel1 dioecious)
ATGTCCGCCTTCGAGGCAGGAGAGTCAGACGCCCCTACTGCTGGGGTCAT CGTCGTGGATCCATTTTGCGACTACCTCGGGAAGCGATGCATGGAGATCC TCGAGGGGGCGGGATACGCCGTCGTTCTGGCGAGAGATCCGCAAAAACAC TTTCCTATCTTATGCTCAGTATGTAACGGTAACCGTAACGGGGCAGTGCA GCAAGAAGCATTCGTAACGTTCGTTTTATTCAATCGGGCGGTGACTGTTT TACGTCTCAAAATACTCCCATCTGTAATTGGCCGTTTCGATGGGTGAATA ATGTATCCGTATATATATATATATATATATACAGCCTCCACAAAGCCTGG CACTTGTACCCCTCTCTCTCTCCTGACTGGCTGTTTTCTTGAAGGCCTAA CGCTGAACGAAGACGACGTGTTGCGATTCGGTTCCGTAGGTCATTTCCGA ACACTTGGTGTCAACCATGGGGCGAGAGGGCGCGGAGCGCTTTCGACCTC CAGCGCCCGGTGGGGAGGCGGAGTGGGCCGCCTGGCTGCCCTTCCCCCTG TTGGGAGTGTTCTGCGAGAGCGATGCCGGCCTTGCCACCGCAGGTCTCGT AAATAATATACTATACTAGACTATCCTTAGCCGTAGCTTTGAGAGTCTCT CATTCCTTGATCTTCACAAAGACTAGACTTGATAATAAAACGGCGGGGCA TCTGGGGCTTAGTCCAAAGTTTCTGGTAAAACCCACCATCCTGCCGTTCG TGAGACACGAGGTTTCACCATAGGAGAAGGCGTACGTGACCGGGGGCCGC TTGATCTGCAAATTGATTCTGTTCATTTAACTCTCTCTCGTCCCACACTC TTCCGGTTAATCGGCGCAGAGGTTGGCGCTCTTAAGGTTCAGGATTCTTG CGGCAAGTCCTATGTCCAGCTCTACCCCCCTCCCACTTCCCCCTTCTAAA GGAGTTCCATGATTGTCCGTGAAGTATCAGTCTACTTTCCGATCCCCGTG GGGTCCTCCCGAGTTCTACATTTATTTCATCCTACTGCTGCTGCTGCTGC TGCTGCTGCCATCGCTGTTGATATTACTGCTGCGCCCTAACAAGAGAGGC TCCAGGCGGCCTTGCTGGGCCCGCGCTTCGGAGGCGTCAACGAAGCGCGG CGAGATAAGTATCTCATGAACGAGAAGGTCCGTAAGGCCGGGCTGATGGC GGTGCGGCAGACCAAGACCGGAGACTGGTCCAAGGCGCGTCATTTCCTCT CAACGCTCGAACCATCATCACCAGTACGGTCAATTCCCCCGTCATTGTCG AAGCCACCTGGGTCTAGAGAAAACCCTTCGCAGGGAGGCTTAAAGGGCGA GAGTATCAGGCCCAAGAAGCCGGCAACTCCCCTTGGCCCCGGCAAGATCA AGGGGGGAAGAGAGGAAGCGGTAACCGCGAGCGATGGGCGCCCGGGAAAG GAGGTGGCTTCGGTCGTGAAGCCAGCGCGAGGGTGCGCCAGCGGCAACGT ATTTCTTTGTAGAGGGGAGGGAGAGGCGAGAGAGGCATTCTACAAGATTC TCGGGACTCCCAAGTATGGGACTCCCGGAGCGGTGAACGACGAGGTGTGA TGTCAGGCGTCAACAACCGTGGGAAGAGAGAACCATCCCCCCCCGCCGCC GCTTGCGCTCACCTATTTTTCGTTGTGTATGTCGGGAGGAGCCAATTTTT GTTTTTTCAATCGAGCATTGGCGAGGTACATTATTTATTTAGGTTGATAA AAATATTAATAACATTGTTTTCTGTGCTTTCCCTAGGATACGGAAATAAT CAACACGACGTATTCCGTCATTATATTCCAGGTTCCGCATTTATGCATAT ATATATATATATATTAGACTATATGCTGGTATAGGTACTTGGAATATGTC CACTTCGGATTTATTGCGTATATATATATTGTAAATATTTACTGCATACT AAACTATTCTTTCTTTTTTATAATATTGTGGTATGCGCCCTTTGTTGTTA CCGCTGACACTCCTTTGCGTTACCGCTGACGCTGCTGCCGAGCAGTCTCC CCACCCCCCCCATCTTCCTAGGTCAAAGAAGTCCACAGACACGTGTGCGT GCTTATCTGCACACCTGTCTGATGATTTTCGTGATCGTGATCGTTCACCG CTCAGGTCGTGCTACAGGAGTTTCTGGTCGGGACTGAGTGGGTCGTCGAC ACCGTCAGCCGGGATGGGAACCACAAGGCATGTATATAA
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Coding sequence (CDS) from alignment at H-elongata_contig10864:1885..4123+

>mRNA_H-elongata_contig10864.702.1 ID=mRNA_H-elongata_contig10864.702.1|Name=mRNA_H-elongata_contig10864.702.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1722bp|location=Sequence derived from alignment at H-elongata_contig10864:1885..4123+ (Himanthalia elongata Himel1 dioecious)
ATGTCCGCCTTCGAGGCAGGAGAGTCAGACGCCCCTACTGCTGGGGTCAT
CGTCGTGGATCCATTTTGCGACTACCTCGGGAAGCGATGCATGGAGATCC
TCGAGGGGGCGGGATACGCCGTCATGTCCGCCTTCGAGGCAGGAGAGTCA
GACGCCCCTACTGCTGGGGTCATCGTCGTGGATCCATTTTGCGACTACCT
CGGGAAGCGATGCATGGAGATCCTCGAGGGGGCGGGATACGCCGTCGTCA
TTTCCGAACACTTGGTGTCAACCATGGGGCGAGAGGGCGCGGAGCGCTTT
CGACCTCCAGCGCCCGGTGGGGAGGCGGAGTGGGCCGCCTGGCTGCCCTT
CCCCCTGTTGGGAGTGTTCTGCGAGAGCGATGCCGGCCTTGCCACCGCAG
GTCATTTCCGAACACTTGGTGTCAACCATGGGGCGAGAGGGCGCGGAGCG
CTTTCGACCTCCAGCGCCCGGTGGGGAGGCGGAGTGGGCCGCCTGGCTGC
CCTTCCCCCTGTTGGGAGTGTTCTGCGAGAGCGATGCCGGCCTTGCCACC
GCAGAGAGGCTCCAGGCGGCCTTGCTGGGCCCGCGCTTCGGAGGCGTCAA
CGAAGCGCGGCGAGATAAGTATCTCATGAACGAGAAGGTCCGTAAGGCCG
GGCTGATGGCGGTGCGGCAGACCAAGACCGGAGACTGGTCCAAGGCGCGT
CATTTCCTCTCAACGCTCGAACCATCATCACCAGTACGGTCAATTCCCCC
GTCATTGTCGAAGCCACCTGGGTCTAGAGAAAACCCTTCGCAGGGAGGCT
TAAAGGGCGAGAGTATCAGGCCCAAGAAGCCGGCAACTCCCCTTGGCCCC
GGCAAGATCAAGGGGGGAAGAGAGGAAGCGGTAACCGCGAGCGATGGGCG
CCCGGGAAAGGAGGTGGCTTCGGTCGTGAAGCCAGCGCGAGGGTGCGCCA
GCGGCAACGTATTTCTTTGTAGAGGGGAGGGAGAGGCGAGAGAGGCATTC
TACAAGATTCTCGGGACTCCCAAGTATGGGACTCCCGGAGCGGTGAACGA
CGAGAGAGGCTCCAGGCGGCCTTGCTGGGCCCGCGCTTCGGAGGCGTCAA
CGAAGCGCGGCGAGATAAGTATCTCATGAACGAGAAGGTCCGTAAGGCCG
GGCTGATGGCGGTGCGGCAGACCAAGACCGGAGACTGGTCCAAGGCGCGT
CATTTCCTCTCAACGCTCGAACCATCATCACCAGTACGGTCAATTCCCCC
GTCATTGTCGAAGCCACCTGGGTCTAGAGAAAACCCTTCGCAGGGAGGCT
TAAAGGGCGAGAGTATCAGGCCCAAGAAGCCGGCAACTCCCCTTGGCCCC
GGCAAGATCAAGGGGGGAAGAGAGGAAGCGGTAACCGCGAGCGATGGGCG
CCCGGGAAAGGAGGTGGCTTCGGTCGTGAAGCCAGCGCGAGGGTGCGCCA
GCGGCAACGTATTTCTTTGTAGAGGGGAGGGAGAGGCGAGAGAGGCATTC
TACAAGATTCTCGGGACTCCCAAGTATGGGACTCCCGGAGCGGTGAACGA
CGAGGTCGTGCTACAGGAGTTTCTGGTCGGGACTGAGTGGGTCGTCGACA
CCGTCAGCCGGGATGGGAACCACAAGGCATGTATATAAGTCGTGCTACAG
GAGTTTCTGGTCGGGACTGAGTGGGTCGTCGACACCGTCAGCCGGGATGG
GAACCACAAGGCATGTATATAA
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