mRNA_H-elongata_contig107488.617.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107488.617.1
Unique NamemRNA_H-elongata_contig107488.617.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig107488.617.1 vs. uniprot
Match: D7FY13_ECTSI (Ring finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY13_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 8.520e-29
Identity = 62/99 (62.63%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:    1 QAVASYAAAVDMFRGVGERDIAEID--DEMTSEDMAVMQALLEEDENEPNAIFMAEDESLDYDGMLELGSAIGDVRQERWRLRSKAVINSLPRVKYYTG 291
            +A+ASYAAAVD FR             + +  EDMA MQAL+EEDEN P+A  MAEDESLDYDGMLELGSAIGDVR++RWR+R K+VI +LPRV Y  G
Sbjct:   47 EAMASYAAAVDNFRSAAXXXXXXXGGMEGVAPEDMAAMQALMEEDENNPDAFAMAEDESLDYDGMLELGSAIGDVRKDRWRMRCKSVIAALPRVSYTAG 145
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BLAST of mRNA_H-elongata_contig107488.617.1 vs. uniprot
Match: A0A6H5KY69_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY69_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 7.680e-27
Identity = 63/99 (63.64%), Postives = 74/99 (74.75%), Query Frame = 1 
Query:    1 QAVASYAAAVDMFRGVGERDIAEID--DEMTSEDMAVMQALLEEDENEPNAIFMAEDESLDYDGMLELGSAIGDVRQERWRLRSKAVINSLPRVKYYTG 291
            +A+ASYAAAVD FR       A     D +  EDMA MQAL+EEDEN P+A  MAEDESLDYDGMLELGSAIGDVR++RWR+R K+VI +LP+V Y  G
Sbjct:  217 EAMASYAAAVDNFRSAAAAARAAGGGLDGVAPEDMAAMQALMEEDENNPDAFAMAEDESLDYDGMLELGSAIGDVRKDRWRMRCKSVIAALPQVSYTAG 315
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BLAST of mRNA_H-elongata_contig107488.617.1 vs. uniprot
Match: A0A836C9F1_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9F1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.380e-7
Identity = 35/93 (37.63%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:   13 SYAAAVDMFRGVGERDIAEIDDEMTSEDMAVMQALLEEDENEPNAIFMAEDES------LDYDGMLELGSAIGDVRQERWRLRSKAVINSLPR 273
            SY A +D  R    + +   D+ M   D+  M+  + E++ +   +   E+E       ++YD +LELG AIGDV+QERWRLR+ A I  LPR
Sbjct:   67 SYQAGMDALRAA--QGMGGWDEGMGEADIRAMRLAMGEEQEDDGGMGEGEEEEGDEETPMEYDALLELGEAIGDVKQERWRLRAPAAIARLPR 157
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BLAST of mRNA_H-elongata_contig107488.617.1 vs. uniprot
Match: A0A7S0GIG7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GIG7_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 3.620e-6
Identity = 38/92 (41.30%), Postives = 52/92 (56.52%), Query Frame = 1 
Query:    1 QAVASYAAAVDMFRGVGERDIAEIDDEMTSEDMAVMQALLEEDENEPNAIFMAED---ESLDYDGMLELGSAIGDVRQERWRLRSKAVINSL 267
            +AVASY+ +   F+     D A   D  +SED+A +QA LEEDE + N I    D     L YD +L LG  IGDV+QERW   +  +I+ +
Sbjct:   50 EAVASYSMSSTFFQ-----DNA---DNYSSEDLAALQAALEEDEFDENEIEEDADVDTSDLSYDALLMLGERIGDVKQERWTHIANGIIDKM 133
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BLAST of mRNA_H-elongata_contig107488.617.1 vs. uniprot
Match: A0A7S2P243_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P243_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 5.980e-5
Identity = 35/96 (36.46%), Postives = 50/96 (52.08%), Query Frame = 1 
Query:   13 SYAAAVDMFRGVGERDIAEIDDEMTSEDMAVMQALLEEDENEPNAIFM------AEDESLDYDGMLELGSAIGDVRQERWRLRSKAVINSLPRVKY 282
            SYA + D  R        E  ++ ++ED A +QA + E++  PNA  +       ED  L YD ML +   +GDV+ ERW L+SK  I  LP+  Y
Sbjct:  189 SYAVSADFLR--------ENANQFSTEDFAALQAAMAEED--PNAGELDEVGDSEEDSELSYDTMLRIAERVGDVKTERWVLKSKDEIEKLPKFVY 274
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107488.617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FY13_ECTSI8.520e-2962.63Ring finger protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KY69_9PHAE7.680e-2763.64RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A836C9F1_9STRA2.380e-737.63RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A7S0GIG7_9STRA3.620e-641.30Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2P243_9STRA5.980e-536.46Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107488contigH-elongata_contig107488:444..2118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue7.3e-23
Seed eggNOG ortholog2880.D7FY13
Preferred nameRLIM
KEGG koko:K15701,ko:K16271
GOsGO:0000122,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007549,GO:0008150,GO:0008152,GO:0009048,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016567,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032446,GO:0036211,GO:0040029,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043433,GO:0043632,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051090,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051603,GO:0060255,GO:0060816,GO:0061630,GO:0061659,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0071704,GO:0080090,GO:0140096,GO:1900095,GO:1901564,GO:1901565,GO:1901575,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.protein modification by small protein conjugation or removal
EggNOG OGsKOG4628@1,KOG4628@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-08_004670.1
Exons3
Model size318
Cds size318
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107488.617.1prot_H-elongata_contig107488.617.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107488 444..2118 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929604.7590437-CDS-H-elongata_contig107488:443..5191622929604.7590437-CDS-H-elongata_contig107488:443..519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107488 444..519 -
1691679088.3113582-CDS-H-elongata_contig107488:443..5191691679088.3113582-CDS-H-elongata_contig107488:443..519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107488 444..519 -
1622929604.778392-CDS-H-elongata_contig107488:839..8981622929604.778392-CDS-H-elongata_contig107488:839..898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107488 840..898 -
1691679088.3275836-CDS-H-elongata_contig107488:839..8981691679088.3275836-CDS-H-elongata_contig107488:839..898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107488 840..898 -
1622929604.8070238-CDS-H-elongata_contig107488:1935..21181622929604.8070238-CDS-H-elongata_contig107488:1935..2118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107488 1936..2118 -
1691679088.3376-CDS-H-elongata_contig107488:1935..21181691679088.3376-CDS-H-elongata_contig107488:1935..2118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107488 1936..2118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107488.617.1

>prot_H-elongata_contig107488.617.1 ID=prot_H-elongata_contig107488.617.1|Name=mRNA_H-elongata_contig107488.617.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
QAVASYAAAVDMFRGVGERDIAEIDDEMTSEDMAVMQALLEEDENEPNAI
FMAEDESLDYDGMLELGSAIGDVRQERWRLRSKAVINSLPRVKYYTGRIA
IDDSK*
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mRNA from alignment at H-elongata_contig107488:444..2118-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107488.617.1 ID=mRNA_H-elongata_contig107488.617.1|Name=mRNA_H-elongata_contig107488.617.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1675bp|location=Sequence derived from alignment at H-elongata_contig107488:444..2118- (Himanthalia elongata Himel1 dioecious)
CAGGCGGTAGCGTCGTACGCGGCAGCGGTGGACATGTTCCGCGGCGTAGG
GGAAAGGGACATCGCCGAGATAGATGATGAAATGACGTCAGAAGACATGG
CGGTGATGCAGGCCTTGCTGGAGGAGGACGAGAACGAGCCAAACGCCATC
TTCATGGCGGAGGACGAATCGCTCGACTACGACGTGAGCCAGCCCCCCAT
CCGTCCTCCCGGCCGAGCGACGGAGGATGTGTCGGAAGAGTCACGGTAAC
CCGACACAGCCGCCGACGGATGGACCGCAAAACACAACATCACAGCATAA
TTTAATTTTTGTTTGTCAAGAAATCAGCTGGAAGAGAGCTTCGTTTTCAC
ACGTTAAATGTAGCCACAGGTGGTGTTTTTTTGTTACGGTCCCTATGGAG
ACTATGATCCAGGTTATGTAGAGCAGTCTTAATGTCTTGTAGGTTGCTGT
AGGCACTATACGACGCGTATATTTCATTATTTTCATTTGTTTACGGTGGG
TACCGGGACCCTCTAGGACACAGTCTTTCTCAGCTAAAGCAAAGCTGCCT
TACTTATCCACTACGCAACCGCTTTTCATTTATAGTATACTTTTCTGTGT
CGAAACTTTTTCTCTTTTTTTTCGTGGCGTCCCCCCGTGAGGAAAGTTAA
CCCTAATCATTTCCGCGAACTTCAGCTGACCAGATTTCAGCCAGGGTGAC
CCCGAGACGCAAAGCTTGTGTATGATCTCCAGGCCTGCAGATCGCTTCCT
TGCCGAAACGCTCCTCCGTAAGCCTAGCAAGCGTTCCCGCTAGAGAACGC
TCCTGCAGCATCTGCTAGCCTCACCCGTCTTTCCAAGACCGTTTAGAACG
TCGCCATACAATAGCTAAAATTCGGTCGCCGTGCCTTGCTTCAAGTTTTT
CCTCAAAAATCGTTACCGTTACCATGCTGAACTCTAAAACCTATTTCACG
GCGATCCGTTTAGGTAGGCTTTATTTGCACTCTACCACTCTTTTAGTGCG
AGTATGATCAATCACTCTCTCTCTCTTGCCGATAGTTCGGTATTTTTGGA
AACTCCTTTTGAACCCCCCCCCAATTAATTCCACTCCCCTCCGCTCCAAT
AGCGTACGTCTTCTCTGTTTGAAGCGTCAGCTCGACCCGGTACTCCCAAT
TTGGAAACCGCACGCGCGAGATCGACGACGTTGCTAAGCGTTCCTTCGCG
TTTTGCTGCGGCGTCGACAGGGCATGCTCGAGCTCGGGAGCGCCATCGGC
GACGTTCGCCAGGAGAGATGGCGATTAAGGTACAGTCGGTAGTTGTTGTA
TGATGTCACGCTAGCCGTGTGGTCTTTCCCTCCCCTTCCCCCCCCTCTGT
CAACGGCGGAGGGAAGAATGGTGGTCACGGATCACACGCATTGTTCGTCT
TGCAGCAAGCTTTGTTTAGACCCTTTCCCTTCATCGATTTTGTAACTTCA
TCCTAGCTCGTTTTTGAAAACATAAACGAAGACCCGCTTTATGAGGGGGG
CTTGACCAAGCCAACCCGACCCGATCACTTGCACGACCCATTTTATTCGT
GTCCTAAACCTCACACCCCCTCTCTCTATATTGTCTCATCACGCTGCAGA
TCCAAAGCGGTCATCAACAGTCTTCCTCGAGTAAAATACTACACCGGGAG
AATTGCCATTGACGACTCGAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig107488:444..2118-

>mRNA_H-elongata_contig107488.617.1 ID=mRNA_H-elongata_contig107488.617.1|Name=mRNA_H-elongata_contig107488.617.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig107488:444..2118- (Himanthalia elongata Himel1 dioecious)
CAGGCGGTAGCGTCGTACGCGGCAGCGGTGGACATGTTCCGCGGCGTAGG
GGAAAGGGACATCGCCGAGATAGATGATGAAATGACGTCAGAAGACATGG
CGGTGATGCAGGCCTTGCTGGAGGAGGACGAGAACGAGCCAAACGCCATC
TTCATGGCGGAGGACGAATCGCTCGACTACGACCAGGCGGTAGCGTCGTA
CGCGGCAGCGGTGGACATGTTCCGCGGCGTAGGGGAAAGGGACATCGCCG
AGATAGATGATGAAATGACGTCAGAAGACATGGCGGTGATGCAGGCCTTG
CTGGAGGAGGACGAGAACGAGCCAAACGCCATCTTCATGGCGGAGGACGA
ATCGCTCGACTACGACGGCATGCTCGAGCTCGGGAGCGCCATCGGCGACG
TTCGCCAGGAGAGATGGCGATTAAGGGCATGCTCGAGCTCGGGAGCGCCA
TCGGCGACGTTCGCCAGGAGAGATGGCGATTAAGATCCAAAGCGGTCATC
AACAGTCTTCCTCGAGTAAAATACTACACCGGGAGAATTGCCATTGACGA
CTCGAAGTGAATCCAAAGCGGTCATCAACAGTCTTCCTCGAGTAAAATAC
TACACCGGGAGAATTGCCATTGACGACTCGAAGTGA
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