mRNA_H-elongata_contig107414.611.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107414.611.1
Unique NamemRNA_H-elongata_contig107414.611.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig107414.611.1 vs. uniprot
Match: A0A6H5KV09_9PHAE (GH16 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KV09_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 5.500e-58
Identity = 93/141 (65.96%), Postives = 114/141 (80.85%), Query Frame = 3
Query:    3 AVNEMDSILATIHYGGTYPDNLFAGCKQS---SGMDFSGDFHVFAIEWLKEEMNWYVDDQLFCHRTMWSSTLEDLGSYRAPFDAEFELLLNLAVGGTLPGRFVDDTAFPATMLVDYVRVYNISAVVPEAEPFLGLPVCLPG 416
            +VN+MD+IL TIHYGG +P NL AGC  S   +G+D+S D+HV+A+EW ++EM WYVDDQLFC RT W+S +     Y+APFDAEFE++LNLAVGG+LPGR VDD A PATMLVDYVRVY+I+  V EAEPFLG P+CLPG
Sbjct:  148 SVNDMDTILGTIHYGGEWPMNLHAGCVSSQLGTGLDYSSDYHVYAVEWEQDEMRWYVDDQLFCQRTKWTSNVTSNEPYQAPFDAEFEIILNLAVGGSLPGRVVDDGALPATMLVDYVRVYDITTDVAEAEPFLGAPLCLPG 288          
BLAST of mRNA_H-elongata_contig107414.611.1 vs. uniprot
Match: A0A7Y2VM67_9GAMM (Glycoside hydrolase family 16 protein n=2 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y2VM67_9GAMM)

HSP 1 Score: 119 bits (297), Expect = 4.210e-29
Identity = 63/128 (49.22%), Postives = 83/128 (64.84%), Query Frame = 3
Query:    9 NEMDSILATIHYGGTYPDNLFAG--CKQSSGMDFSGDFHVFAIEWLKEEMNWYVDDQLFCHRTMWSSTLEDLGSYRAPFDAEFELLLNLAVGGTLPGRFVDDTAFPATMLVDYVRVYNISAVVPEAEP 386
            ++ + IL TIHYGG +P+N F+G   +  SG  F  DFH FAIEW + E+ WYVDD L+  +T W+S   + G++ APFD  F LLLN+AVGG LPG    +T FP  ++VDYVRVY       EA+P
Sbjct:  165 DDPEEILGTIHYGGEWPNNTFSGQEYRLDSG-SFHDDFHEFAIEWEEGEIRWYVDDVLYSTKTNWTS---NGGAFPAPFDKRFHLLLNMAVGGNLPGAPDANTLFPQELVVDYVRVYQ------EADP 282          
BLAST of mRNA_H-elongata_contig107414.611.1 vs. uniprot
Match: A0YDK3_9GAMM (Beta-glucanase/Beta-glucan synthetase n=1 Tax=marine gamma proteobacterium HTCC2143 TaxID=247633 RepID=A0YDK3_9GAMM)

HSP 1 Score: 115 bits (289), Expect = 1.130e-28
Identity = 54/113 (47.79%), Postives = 72/113 (63.72%), Query Frame = 3
Query:   18 DSILATIHYGGTYPDNLFAGCKQSSGMDFSGDFHVFAIEWLKEEMNWYVDDQLFCHRTMWSSTLEDLGSYRAPFDAEFELLLNLAVGGTLPGRFVDDTAFPATMLVDYVRVYN 356
            +++  TIHYG  +PDN+  G +     D + DFH +A+EW + EM WYVDD L+  +  W +T  D   + APFD  F +LLN+AVGG  PG    +TAFPA M VDYVRVY+
Sbjct:  204 NTVYGTIHYGSVWPDNVATGSQYLVSSDATADFHDYALEWDETEMRWYVDDNLYAVQNAWGTTAAD---FPAPFDQPFYVLLNVAVGGDFPGAPDTETAFPAVMEVDYVRVYS 313          
BLAST of mRNA_H-elongata_contig107414.611.1 vs. uniprot
Match: A0A524K1E4_9GAMM (Glycoside hydrolase family 16 protein (Fragment) n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A524K1E4_9GAMM)

HSP 1 Score: 115 bits (288), Expect = 1.690e-27
Identity = 57/122 (46.72%), Postives = 71/122 (58.20%), Query Frame = 3
Query:   18 DSILATIHYGGTYPDNLFAGCKQSSGMDFSGDFHVFAIEWLKEEMNWYVDDQLFCHRTMWSSTLEDLGSYRAPFDAEFELLLNLAVGGTLPGRFVDDTAFPATMLVDYVRVYNISAVVPEAE 383
            + I  T+HYGG +P N F+G         +G FH +AIEW + E+ WYVDDQL   +  W ST    G + APFD  F LLLN AVGG   G   D T FPAT ++DYVRVY +    P A+
Sbjct:  191 EKIYNTLHYGGPFPANTFSGSGTFLPAGTAGSFHEYAIEWQRGEIRWYVDDQLVSTQNSWYSTA---GPFPAPFDVNFHLLLNFAVGGNFVGNPSDSTVFPATYVIDYVRVYALPVDPPLAQ 309          
BLAST of mRNA_H-elongata_contig107414.611.1 vs. uniprot
Match: M5RMC1_9BACT (Glycoside hydrolase family 16 n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5RMC1_9BACT)

HSP 1 Score: 108 bits (271), Expect = 1.840e-27
Identity = 54/116 (46.55%), Postives = 72/116 (62.07%), Query Frame = 3
Query:   12 EMDSILATIHYGGTYPDNLFAGCKQS-SGMDFSGDFHVFAIEWLKEEMNWYVDDQLFCHRTMWSSTLEDLGSYRAPFDAEFELLLNLAVGGTLPGRFVDDTAFPATMLVDYVRVYN 356
            E D +L T+HYG  +P N ++G K       F+ DFH F++ W + +++W +D + +  +T WSST    G + APFD EF LLLN+AVGG   G   D T FPA MLVDYVRVY 
Sbjct:   57 EPDEVLGTLHYGDVWPRNAYSGDKYKLPNGSFADDFHTFSVVWKEGQIDWLIDGKKYQTQTKWSSTG---GEFPAPFDQEFHLLLNVAVGGNFLGPPNDSTPFPAKMLVDYVRVYQ 169          
BLAST of mRNA_H-elongata_contig107414.611.1 vs. uniprot
Match: A0A3M2CPB4_9BACT (Glycosyl hydrolase family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2CPB4_9BACT)

HSP 1 Score: 115 bits (287), Expect = 1.960e-27
Identity = 59/140 (42.14%), Postives = 82/140 (58.57%), Query Frame = 3
Query:    3 AVNEMDSILATIHYGGTYPDNLFAGCKQSSGMDFSGDFHVFAIEWLKEEMNWYVDDQLFCHRT--MWSSTLEDLGSYRAPFDAEFELLLNLAVGGTLPGRFVDDTAFPATMLVDYVRVYNISAVVPEAEPFLGLPVCLPG 416
            +VN  D I  T+H+G  +P+N   G   ++G DFS +FH +AIEW  +++ WY+D QL+  +    W S     G+ RAPFD EF LLLN+AVGG  PG     + +P T+ VDY+RV+       E  PF G P  +PG
Sbjct:  149 SVNFADRIYGTLHFGSVWPNNASTGGSFANGTDFSQNFHDYAIEWDPDQIRWYIDGQLYSTKNADQWFSAASS-GNARAPFDHEFHLLLNVAVGGAFPGNPDGSSQWPQTLEVDYIRVFRR-----EQAPFGGTPHAIPG 282          
BLAST of mRNA_H-elongata_contig107414.611.1 vs. uniprot
Match: A0A7Y1TI90_9GAMM (Family 16 glycosylhydrolase n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y1TI90_9GAMM)

HSP 1 Score: 115 bits (289), Expect = 2.520e-27
Identity = 61/127 (48.03%), Postives = 73/127 (57.48%), Query Frame = 3
Query:    9 NEMDSILATIHYGGTYPDNLFAGCK--QSSGMDFSGDFHVFAIEWLKEEMNWYVDDQLFCHRTMWSSTLEDLGSYRAPFDAEFELLLNLAVGGTLPGRFVDDTAFPATMLVDYVRVYNISAVVPEAE 383
            +E D+I  TIHYG ++P NLF+  +   S    F  DFH FAIEW   E+ WYVD   F  R  W ST    G + APFD +F LLLNLAVGG LPG     T FP   ++DYVRVY +    P  E
Sbjct:  168 DEPDTIFGTIHYGASFPGNLFSSTEFTLSGPPSFHDDFHTFAIEWENGEIRWYVDGVQFASRDSWFSTG---GPFPAPFDVDFHLLLNLAVGGNLPGPPDGTTVFPQEYVIDYVRVYQVPNDKPVVE 291          
BLAST of mRNA_H-elongata_contig107414.611.1 vs. uniprot
Match: A0A812XTA4_9DINO (GlcA protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812XTA4_9DINO)

HSP 1 Score: 114 bits (285), Expect = 3.550e-27
Identity = 59/140 (42.14%), Postives = 83/140 (59.29%), Query Frame = 3
Query:    3 AVNEMDSILATIHYGGTYPDNLFAGCKQSSGMDFSGDFHVFAIEWLKEEMNWYVDDQLF--CHRTMWSSTLEDLGSYRAPFDAEFELLLNLAVGGTLPGRFVDDTAFPATMLVDYVRVYNISAVVPEAEPFLGLPVCLPG 416
            ++N  DS+  TIHYG  +P+N   G   ++G+D+S DFHVF+IEW  +++ WY+D Q +   +   W S+    G+ RAPFD +F LLLN+AVGG  PG      ++P T+ VDYVRVY          PF   P  +PG
Sbjct:  138 SINTADSMHGTIHYGNNWPNNQSNGGSLNNGIDYSDDFHVFSIEWEPDQIRWYIDGQQYHSVNSNEWFSSAAP-GNVRAPFDTQFHLLLNVAVGGNWPGNPNGSASYPQTLEVDYVRVYQ-----QIQGPFGDQPAEIPG 271          
BLAST of mRNA_H-elongata_contig107414.611.1 vs. uniprot
Match: UPI0019B0D815 (family 16 glycosylhydrolase n=1 Tax=Saccharospirillum salsuginis TaxID=418750 RepID=UPI0019B0D815)

HSP 1 Score: 112 bits (280), Expect = 6.920e-27
Identity = 53/117 (45.30%), Postives = 73/117 (62.39%), Query Frame = 3
Query:   18 DSILATIHYGGTYPDNLFAGCKQSSGMDFSGDFHVFAIEWLKEEMNWYVDDQLFCHRTMWSSTLEDLGSYRAPFDAEFELLLNLAVGGTLPGRFVDDTAFPATMLVDYVRVYNISAV 368
            + +  T+HYGG++PDN+++G   +     + +FH +A+EW   E+ WYVD  L+  +T W S   D G+Y APFD +F LLLN+AVGG  PG     T FP  M VDYVRVY   A+
Sbjct:  160 NDVHGTLHYGGSWPDNVYSGQVYTPSTSVTDNFHTYAVEWEPGEIRWYVDGLLYQTQTEWYS---DNGAYPAPFDQDFHLLLNVAVGGDWPGDPDSTTVFPTAMQVDYVRVYQDPAI 273          
BLAST of mRNA_H-elongata_contig107414.611.1 vs. uniprot
Match: A0A368NMN2_9GAMM (Uncharacterized protein n=3 Tax=Corallincola TaxID=1775176 RepID=A0A368NMN2_9GAMM)

HSP 1 Score: 114 bits (285), Expect = 8.660e-27
Identity = 60/141 (42.55%), Postives = 82/141 (58.16%), Query Frame = 3
Query:    6 VNEMDSILATIHYGGTYPDNLFAGCKQSSGMDFSGDFHVFAIEWLKEEMNWYVDDQLFCHRTMWSSTLEDLGSYRAPFDAEFELLLNLAVGGTLPGRFVDDTAFPATMLVDYVRVYNISAVVPEAE----PFLGLPVCLPG 416
            V+  +SI  T+HYGG +PDN  +G K +   + +  FH +++EW  E + WY+D +L+  +T W S   + GSY APFD  F L+LN+AVGG  PG    +T FP  M VDYVRVY      P  E    P+ G  V +PG
Sbjct:  462 VDGNNSIHGTLHYGGKWPDNTHSGDKVTPATNVATQFHTYSVEWEPEAIRWYIDGKLYQTQTQWWS---EGGSYPAPFDQRFHLILNVAVGGNWPGSPNQNTVFPQIMEVDYVRVYEKGQQQPGDECDSLPYGGRAVGIPG 599          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107414.611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KV09_9PHAE5.500e-5865.96GH16 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7Y2VM67_9GAMM4.210e-2949.22Glycoside hydrolase family 16 protein n=2 Tax=Xant... [more]
A0YDK3_9GAMM1.130e-2847.79Beta-glucanase/Beta-glucan synthetase n=1 Tax=mari... [more]
A0A524K1E4_9GAMM1.690e-2746.72Glycoside hydrolase family 16 protein (Fragment) n... [more]
M5RMC1_9BACT1.840e-2746.55Glycoside hydrolase family 16 n=2 Tax=Rhodopirellu... [more]
A0A3M2CPB4_9BACT1.960e-2742.14Glycosyl hydrolase family protein n=1 Tax=Planctom... [more]
A0A7Y1TI90_9GAMM2.520e-2748.03Family 16 glycosylhydrolase n=1 Tax=Woeseiaceae ba... [more]
A0A812XTA4_9DINO3.550e-2742.14GlcA protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
UPI0019B0D8156.920e-2745.30family 16 glycosylhydrolase n=1 Tax=Saccharospiril... [more]
A0A368NMN2_9GAMM8.660e-2742.55Uncharacterized protein n=3 Tax=Corallincola TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107414contigH-elongata_contig107414:1059..2158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.5
Seed ortholog evalue9.8e-49
Seed eggNOG ortholog2880.D8LQ34
EggNOG free text desc.Glycosyl hydrolases family 16
EggNOG OGs2S1W9@2759,COG2273@1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size417
Cds size402
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107414.611.1prot_H-elongata_contig107414.611.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107414 1059..2144 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929603.9957135-CDS-H-elongata_contig107414:1058..11281622929603.9957135-CDS-H-elongata_contig107414:1058..1128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107414 1059..1128 -
1691679087.9906363-CDS-H-elongata_contig107414:1058..11281691679087.9906363-CDS-H-elongata_contig107414:1058..1128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107414 1059..1128 -
1622929604.0116365-CDS-H-elongata_contig107414:1553..17421622929604.0116365-CDS-H-elongata_contig107414:1553..1742Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107414 1554..1742 -
1691679088.0022144-CDS-H-elongata_contig107414:1553..17421691679088.0022144-CDS-H-elongata_contig107414:1553..1742Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107414 1554..1742 -
1622929604.028354-CDS-H-elongata_contig107414:2001..21441622929604.028354-CDS-H-elongata_contig107414:2001..2144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107414 2002..2144 -
1691679088.0182235-CDS-H-elongata_contig107414:2001..21441691679088.0182235-CDS-H-elongata_contig107414:2001..2144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107414 2002..2144 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929604.041011-UTR-H-elongata_contig107414:2144..21581622929604.041011-UTR-H-elongata_contig107414:2144..2158Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107414 2145..2158 -
1691679088.029886-UTR-H-elongata_contig107414:2144..21581691679088.029886-UTR-H-elongata_contig107414:2144..2158Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig107414 2145..2158 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107414.611.1

>prot_H-elongata_contig107414.611.1 ID=prot_H-elongata_contig107414.611.1|Name=mRNA_H-elongata_contig107414.611.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
MDSILATIHYGGTYPDNLFAGCKQSSGMDFSGDFHVFAIEWLKEEMNWYV
DDQLFCHRTMWSSTLEDLGSYRAPFDAEFELLLNLAVGGTLPGRFVDDTA
FPATMLVDYVRVYNISAVVPEAEPFLGLPVCLPG
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mRNA from alignment at H-elongata_contig107414:1059..2158-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107414.611.1 ID=mRNA_H-elongata_contig107414.611.1|Name=mRNA_H-elongata_contig107414.611.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1100bp|location=Sequence derived from alignment at H-elongata_contig107414:1059..2158- (Himanthalia elongata Himel1 dioecious)
AGGCAGTGAACGAAATGGATTCAATTTTGGCAACAATACACTATGGTGGA ACATATCCCGACAACCTCTTTGCTGGGTGCAAGCAGTCCTCAGGGATGGA CTTCAGCGGAGATTTTCATGTATTCGCTATTGAGTGGCTCAAAGAAGAGA TGAATTGGTGAGCACACTGCTGCCTAATGTCGGGTAGGTGTCCTTGAGCA GTAGTTGAATGTGCAATGCAATGCGTGATGCAGTCTCTAAGCAGACTTGG ATAAACAGGCGTGGGTATTCGGAGGGTTTAAATGGGTTCATATGTTGTTT ACATAAAAACGCCTCTTTAGCAGACGTTTTTTTTAATCTATCTACCAGGT ACAGTATTGAATTAACACTCCCCGATGTGACAGTTAAGAGAGAGAGGTGA TGTTGTGGGTCTGCAGGTACGTGGATGACCAGCTGTTCTGCCATCGAACA ATGTGGTCAAGTACGCTTGAAGATTTGGGGTCCTACCGGGCGCCTTTCGA CGCGGAGTTCGAGCTGCTGTTGAATCTTGCTGTTGGAGGTACTCTGCCTG GAAGATTTGTCGACGATACCGCGTTTCCCGCCACCATGCTGGTTGATTAT GTCAGGTATATTTAATATATAGGGAAATGTATATACTAGGCTATGACAGG TATTATGTATAATCTAAGCTTATTTATTTGTTTTTCTTCTTTTCTAGACC GGTATAAGTTACTGTACTATCCTGAAAAAAAAAAGGTGCGGAGACATATT TTCGAGACAGAGAGGCTCAGCTCCTTTTTGGAAGTTTCTTGAAGATATAA TATTTCCCCTGGTTGGAGAGAGCACCTCTCAGTTAGTTGAAGGCTATAGA TTCATTCTCATCATTCTCGTATAGCCACCGACATTGCACCGACAGTCCCT GGCGTTCAATGATCTTCCGAGGCATTTACTGTTGTGCATGCAAAGGCGAT TAATATGTAATACTGCATGGAATTCAGGATTCAGCAAATATGGCGTTCGA TGTTTTGTCCGGCGTTTTTTACGGGAACAGGGTTTACAACATTTCCGCCG TGGTGCCGGAAGCCGAGCCATTCCTTGGGCTGCCCGTCTGCCTCCCCGGG
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Coding sequence (CDS) from alignment at H-elongata_contig107414:1059..2158-

>mRNA_H-elongata_contig107414.611.1 ID=mRNA_H-elongata_contig107414.611.1|Name=mRNA_H-elongata_contig107414.611.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig107414:1059..2158- (Himanthalia elongata Himel1 dioecious)
ATGGATTCAATTTTGGCAACAATACACTATGGTGGAACATATCCCGACAA
CCTCTTTGCTGGGTGCAAGCAGTCCTCAGGGATGGACTTCAGCGGAGATT
TTCATGTATTCGCTATTGAGTGGCTCAAAGAAGAGATGAATTGATGGATT
CAATTTTGGCAACAATACACTATGGTGGAACATATCCCGACAACCTCTTT
GCTGGGTGCAAGCAGTCCTCAGGGATGGACTTCAGCGGAGATTTTCATGT
ATTCGCTATTGAGTGGCTCAAAGAAGAGATGAATTGGTACGTGGATGACC
AGCTGTTCTGCCATCGAACAATGTGGTCAAGTACGCTTGAAGATTTGGGG
TCCTACCGGGCGCCTTTCGACGCGGAGTTCGAGCTGCTGTTGAATCTTGC
TGTTGGAGGTACTCTGCCTGGAAGATTTGTCGACGATACCGCGTTTCCCG
CCACCATGCTGGTTGATTATGTCAGGTACGTGGATGACCAGCTGTTCTGC
CATCGAACAATGTGGTCAAGTACGCTTGAAGATTTGGGGTCCTACCGGGC
GCCTTTCGACGCGGAGTTCGAGCTGCTGTTGAATCTTGCTGTTGGAGGTA
CTCTGCCTGGAAGATTTGTCGACGATACCGCGTTTCCCGCCACCATGCTG
GTTGATTATGTCAGGGTTTACAACATTTCCGCCGTGGTGCCGGAAGCCGA
GCCATTCCTTGGGCTGCCCGTCTGCCTCCCCGGGGGTTTACAACATTTCC
GCCGTGGTGCCGGAAGCCGAGCCATTCCTTGGGCTGCCCGTCTGCCTCCC
CGGG
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